Array 1 16096-17138 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFV01000002.1 Actinomyces oricola strain R5292 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16096 36 100.0 33 .................................... CGTGCTTAACCGACGGGGTTACATCGACCTCAA 16165 36 100.0 35 .................................... GTGGCGGAGGAGTCCGCCGTGGAGCTGGATCTCTA 16236 36 100.0 35 .................................... GCGCAGTCCATGTCTGAAGGATACTTGAAGATGAT 16307 36 100.0 35 .................................... GCTTCCGCTTGACCTCAGAAGAAAAACCCCCGAGA 16378 36 100.0 36 .................................... TCAATTCATCGTCCCCTTCCGAGACAGTAGTGCCAG 16450 36 100.0 34 .................................... CAGTTCGCCGTTGGACATACCCTTCACATTCATG 16520 36 100.0 35 .................................... CCATCCAAGAGGGCGTCGTGCAGATAACCCGGCTT 16591 36 100.0 36 .................................... TTATCTGGTCTGTGTGGTCTATCGGAGTTGCCGTGG 16663 36 100.0 37 .................................... ATTCGAACACGTCGAGCACATTGTTGTAATCAAGCCA 16736 36 100.0 35 .................................... GAATGGTCACCGTATACATACGCGACTGCATAATG 16807 36 100.0 38 .................................... ATATCTCCATGCACCAGGACTACAGCCAGGTGCCCGGT 16881 36 100.0 36 .................................... GCGATCAGCGTCACCCCGATGGGGATGGTAATCGAA 16953 36 100.0 40 .................................... CCCAGGATGTTCTCCTGGATCGTCTCCAGGGACTCGCCAG 17029 36 100.0 37 .................................... CCGCACGAGCCTGCTCCAAACGCGACGCACCCGGCAT 17102 36 100.0 0 .................................... | C [17136] ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 36 GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : ACCGGGGAGTGACCGTACGTTAATGCGCGATGACGTGAGGCGGGTTCTCGTCGCCTATGATATTCCATCCGACCGGCGCCGGACGAGGGTTTCAAAGAAGCTCTCCCAGTACGGCGATCGGATTCAGTACTCGGTGTTCATCGTCGATGCCGCTCCTGCCCGGCTCCTGCGTCTGCGCGGTGAGCTGAATGCGATCGTCGATCCTGACGCGGATTCGATCCTTCTGTGCGACCTCGGCTTGCTGTCGACCGTGGATGAGCGGAGGTTCAGCTACGTCGGGCTGACGCGAACGATCACGCCGGACGGCCCCCTCATCGCCTGACGCGAGCGCTCCGGTGGTCCGGGATCCCCGGTCAGCGCTCGTCGCCCAGCTTTTGGCGTTCTCATGCCGATTCACGGAGATGGTGCGGTCGAGCTGAGGCTCGACCCGAGCTACGCATAGCCGAGCGGTCGCAGTCGGTTCGCTCGCCAGCGGCGTCGTAGGCTAGACTACGGGGACT # Right flank : CTGGTACCCGCCCTTCCGGCTCCGGCACATCGATCGCCGTGATGCCGGTTGGCACCGAATACGAACCTTTTGGCCCCGGTCCCCGGGCAAAAGCAGGGGACCGGGGCCAAAAGGTTCATTCTCGGCGTTGCGGTGGGCGGCGTCGGCGGATAGACAGCTGCCGCGCTTCGCGATCCGTCGGCCGCCGTGGCAGCAACGTTGATGTAGCGGATGGGCGCGGACGGCCAAGTCGGCGCGGATCGCCTCCAGAGCCGAACCCGCCCTCGTGGCGGTCGGCCGATCCTCATCCGGCCGGGGCCCCGCATCGTGCACGTCCGGCGCACGCGCGCAGGATATTGTGCTGCATACGTTCACCCTGGAGGTCACCCATGCGCATCACCCCCCACCTCAGCACCCCCGACGAGCTCGCCGCCCTGCCCCGCCCTTCCGCCTGGCTGTGCGACATGGACGGGGTGCTCGTCCACGAGAATCTCGCCTTGCCGGGGGCGGTCGAGTTCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 281-2363 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFV01000015.1 Actinomyces oricola strain R5292 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 281 35 81.1 39 ..T..........-C.....A.-...A..G....... ACCTGGGCAGAGCATAGCACAGACGATGGGCCTGCGCCG 355 37 94.6 36 CC................................... GGTCCACTGGGCGTTGCATGAGGTGCGGGGCGTGTC 428 37 100.0 36 ..................................... AGCACCCCTCCCCCTTGTCGGAGGATACGGGTCAAC 501 37 100.0 35 ..................................... GTAACATACGGAGGTCCCAGAATCGTCTGGCTGGA 573 37 100.0 36 ..................................... GGCAGTTCATGAATTACTCCAAGACCTTGGGGTAGC 646 37 100.0 37 ..................................... GGTAGAACTGGCCGCGTGGCTAGATGGCCACGCTGAT 720 37 100.0 37 ..................................... CAGCGGTCAGCGGAAGCTGTCCAGCGGGGTGACGCAA 794 37 100.0 35 ..................................... CGTCAGGGCGAAGAACGTACAGAATTCGGTAACAT 866 37 100.0 36 ..................................... GGCGTTATCGCCGGGAGTAAACTAACGGCCGACGAA 939 37 100.0 37 ..................................... AAGTCGACCCTAACCAATTGATCGCTGCCGGGAGTTC 1013 37 100.0 34 ..................................... GAAGTAAGCAGGCAGCATGGGCAACGACGCCCGT 1084 37 100.0 37 ..................................... TCGGAGAGAAGTCCGACGCTTGGTTGAGCGCTAGCCG 1158 37 100.0 36 ..................................... CATCTACGAAAGGAGACTACAATGGACGACTCTAGT 1231 37 100.0 37 ..................................... GGTCATGAGTGTGCACACCCTGCGGGAGGCCGGCTGG 1305 37 100.0 35 ..................................... GTATATGTATCCCACGTACTAACGAGGATAACAAT 1377 37 100.0 30 ..................................... GATATCAGCTCTCGGGACATGGGTGTTATT 1444 37 100.0 34 ..................................... GGCGTGACGGGCTATGGGAAGATGAGTTCTTCCC 1515 37 100.0 42 ..................................... GGAATATGCAGAGGAGTGTCTCTCCTCGGGTAGAATAATCAT 1594 37 100.0 37 ..................................... TCGTTGGCGAGAAGTCAAACGCTTACCGTCGGGCCTC 1668 37 100.0 38 ..................................... CGGAGGAGTGGGAGCTCCCCGCGCAGTCTGAGCCGGTT 1743 37 100.0 38 ..................................... TTGAAGGCTGGCATAACGATTATGTAGTCCTTTACGGA 1818 37 100.0 33 ..................................... TCGTCGTGGGGGGCTACGGGTCCACGAGACCCG 1888 37 100.0 38 ..................................... GTTGCCACCCCTACTCCCCTTGAGGTCTTCGAGCGCGC 1963 37 100.0 37 ..................................... ACGTTATCTGGACCACCCGTCTTCGGACCCTGTTACC 2037 37 100.0 36 ..................................... CAAGATGACCATCGAAGAGAAGCGCTACAACTTCGA 2110 37 100.0 38 ..................................... ATTGTGACCCTCGGCCTTGTGGCCGGGTCTAAAATGTC 2185 37 100.0 31 ..................................... ATTTCTCTCGAGGGTAGTACGCCCATAGTGT 2253 37 100.0 37 ..................................... CGTAATAAAGCCGCTCAGATCACTGCTACGACTTCAG 2327 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 29 37 99.2 36 GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Left flank : AGCCTCATACGCCTGACCTACGGACCCCACGCATCCATAGCCGAACGACTACGACACCTCACCTACGAACCATCAGAAGCAACACGCCTGGTCACAGCACCATAGAAACAACTTTGCCGAGCCCCTGTATCGGGGTCTTTGTTCCCATCACCAGAGGTGATGGGAACAAAGACCCCGATTTGCGGCTGTCTGACGCCCACCCTTTTTGCCATAACACACCTCACGGTGCGGAGCACCCTCTAGATCGACGGTGTTCCGGTTCGATGAATTCGACAACAAGG # Right flank : CCCCCCTGCCCCAGAAGCCGCGCCATGACGCCACTTCAAGGGCCCGGATCGCCACCGGCCCCGCAAGCACCCCAACGGGACGGCTAGCACCGCCCCCATTCTGCCACTTCTCCCTGCAATCACGCCACTCGCCACCGACGCCACTTCCACGCCCCCGGCAAACAACTTCCAACGACGCCAAGCCGAAAAGTCCCCCTCCAACACCACCCCCACTCAGGACCAAAGCCCCTTGACAAACGAAGTGCGGTTGTTTATTAACACGCTTCGGGCCTCTCGGCTACGGGCCAGAATGCGCTCAACCCCCATAGACCTCGGGCCGCAGGGTCCCGATGAACGGCAGGTTGCGATAGTTCTCGGCGTAGTCCAGCCCGTAGCCGACCACGAACTCCGTGGGGATGTCGAAGCCCACGTAGGCCACCTCCACCTCCACCTTGGCAGCTTCAGGCTTGCGCAACAGGGTCGCGATCTCCACGCTCGCCGCCCCGCGCGAGGAGAGGTTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 79876-81366 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFV01000006.1 Actinomyces oricola strain R5292 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 79876 37 91.9 34 AC.G................................. CCTTCCCCTTCGCGCACACGGAAGAGACCGTGCG 79947 37 100.0 36 ..................................... TAAAGATTTCGACGTCTGACACCTGACTCCTCTACT 80020 37 100.0 37 ..................................... CGCGGCCATCCTGCTCCTCCTGAGCATCGTGCTCCTG 80094 37 100.0 36 ..................................... GGGGGAGGACTGGTATGACGAATTCGAGATTCTCAC 80167 37 100.0 35 ..................................... TCTCAATTCCTGAGCACGTGATGGAAGTCTTGGCG 80239 37 100.0 34 ..................................... ACGAGGAATTCGACGTGCTCACTCCGGAGAGCAT 80310 37 100.0 33 ..................................... ATATGGTGTGTGATTACTGCAGCGCTGTCATTC 80380 37 100.0 36 ..................................... GCCGTCACCACGGATTGGTCGATGACGCGGGGCCAG 80453 37 100.0 36 ..................................... CTTGAGGATTGTACTGTTGATGCGCCTCAGGATGTC 80526 37 100.0 32 ..................................... CTCAAGGCTGTACGACAACAGCTCAATCAGGA 80595 37 100.0 37 ..................................... ATGGAGATCCTGCATCACCACGGTATAAAGCCGCGGT 80669 37 100.0 35 ..................................... GAGACAACACAGACCCCGACGTAGAACCCTACGTC 80741 37 100.0 38 ..................................... CGAGAAGGTCCTGGCTGAAGTCGAGGAGGTCGATTCCT 80816 37 100.0 35 ..................................... TTGCGTCGATAGTAGCTCCATCCGTGACATCCTTG 80888 37 100.0 38 ..................................... CTACAGGGGCTTCTATTTTGAGGCTTGGCAGCGAGCAG 80963 37 100.0 39 ..................................... TGAAAAGAGACTGTCATGGACGAACCCGGTCCATCTCTT 81039 37 100.0 38 ..................................... AACAACGAACCGACCCCTTCTTCCGAAGAGAAGAAGAC 81114 37 100.0 35 ..................................... CCGACGGACTATTGTTCTTCGGGCCAATTGTCGAC 81186 37 100.0 32 ..................................... GCATATTGGCGATTATATTCGCCGAACGAACT 81255 37 100.0 38 ..................................... TGCACTGCAAGGGAAATGCAAAAACAGATTCCCGAGAT 81330 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.6 36 GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Left flank : ATGACGCCGTGCTGGAGGGGCTGGCCGCCGGTAAGGGGCACGAACGCGGCCAGGGCCTGACCCTGGGTGAGCTCCAGCGCTGCGCACGAAACGTCCTGCGCGCGACGCTGAGCATTCGCCTGGCGGCCACGCGGCACTGAACTGAGCGTCCCATGGTGGGGCGGGAACAGCCTGTTTGCGGTCTGGCGGCCGCAGACAGGCTGTTCCCGTTTTCCGTTCCCAGTGCATCACGGGCCCTTGCAGGCGCATCCCTCACCTGGGGCCGGGCGACCTAAGGGGGCCTGCGGCCCTCAGGAGAGCCGGCTTCGCGGATAGCCGGCCATGTCATGACGACGACGGAGATTATCACCTTCTGCGCGAACCTCATTGAGGCCTGTCTGAACCGCCGGATTCACGGCGGCTTTCCGGAATGACGGCCCAGCCAACAGCGCCCGCATCGACTCTATTGGGTCAGGATGCACTCTGATTGACTAACGCCACCGACTCCTCGTCGGAAATGA # Right flank : CCCCTGCCCCAGAAGCCGCGTCATGACGCCACTTCAAGGGCCTGGATCGCCACCGGCCCCGCAAGCACCCCAACGGGGTGGCTAGCACCGCCCCCATTCTGCCACTTCTCCCTGCAATCACGCCACTCGCCACCGACGCCACTTCCACGCCCCCGGCAAACAACTTCCGACGACGTCATGCCGAAAAGTCGCCCTCCAACACCACCCCCACCCAGGACCAAAGCCCCTTGACAAACGTGATACGACTGTTCATAAAGGTGATCGACGGATTGAGTCGGTTGTGAGTAACGCGGTGGCGATACCCAACTCCCAGCCCTGACACCAGGCCCATTTGCGTATCACCTCCGACGGCTGCGCCCCACTGCCTCAAGCGGGGGCGCCTCCACCGCCAGCTCGGGGGCCTTGGTGCGCACCAGGCGCCCCACTGCCTCAAGCGGGGGCGCCCCTCGATGGCAGAGAGCCGGAGCGAACATCGGACTCGTCGTCATCGTCGCTCATGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1269-357 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFV01000062.1 Actinomyces oricola strain R5292 Scaffold61_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1268 37 100.0 34 ..................................... ATTACCATTGCCGCAACGATGTTCGCGGCAACTC 1197 37 100.0 36 ..................................... GCCGACGTCCTGCCTCTGGACGGGGGCTATGTGCGG 1124 37 100.0 38 ..................................... AGCTGTGTCTGGGCCGTGGTGTAGGACGATCTCTAAGA 1049 37 100.0 37 ..................................... AGTAATAGGCGGCTGCTTACTACTAGCATTCCTTGTT 975 37 100.0 34 ..................................... GGGAGGAAGAGGTTGTCACGGAGGTTAGGATTCC 904 37 100.0 38 ..................................... TACTAAGATCCGCACGACAGGTCCGGGGCGGGCAGTAG 829 37 100.0 36 ..................................... TGCACCGAGTGTGAGGGCCCCATGAAAAAGCTTATA 756 37 100.0 36 ..................................... CTAAGGAGGTGGCGAGACAGAGATCCTGTCCTATAC 683 37 100.0 35 ..................................... CAGCGCCATCAGCGCCTTCAGGCGCTGGTGCGCAC 611 37 100.0 37 ..................................... CCGTCTGGGCACGGAGGTCATCGCGGGCGCCGCTTAT 537 37 100.0 34 ..................................... CCGAATCAACTCATTGCTGCCGGCTCTTCATTAG 466 37 100.0 36 ..................................... AAGCCTTCGCACATGTCATGACGGGTCTACTGTCGA 393 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Left flank : TGCGCGGTCACGTCCGCGCCCACGGGCCGATACCCACAAGCCCTACTGGTTGCGGGCGATCTCCCGCGAGACCACCGAGACATCACGACCGATCCGCTCAGCGATCCTGCGCAACGACCAGCCCTGCGCCAGCCCCCGTGCGATCGCAGCCCGATCCGACATCGTCAACATCCCACCCAACACAACCTCCCGCCTCTAACCAGCACTGTTGCTACGACCCTATGACACCACCCTTTCTGACCCCGCCAAAGAGTCCTCACGACTCAGAGGCTTTGA # Right flank : CCCCCCTGCCCCAGAAGCCGCGTCATGACGCCACTTCGAGGGCCCGGATCGCCACCGGCCCCGCAAGCACCCCAACGGGGTGGCTAGCACCGCCCCCATTCTGCCACTTCTCCCTGCAATCACGCCACTCGCCACCGACGCCACTTCCACGCCCCCGGCAAACAACTTCCAACGACGCCAAGCCGAAAAGTCCCCCTCCAACACCACCCCCACCCAGGACCAAAGCCCCTTGACAGGACCGGATCGTTATATTGAGCCTTTCTCACCGGGTGTCTTTATTGAGGTTGATGATGACGAGTGCGGTGGCGGTGATGGTGGTGATGGCCTTGGGGTCGAGGGTGACTCTCTGGAGGGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 122-882 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFV01000070.1 Actinomyces oricola strain R5292 Scaffold69_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 122 37 89.2 36 AC..AG............................... AGTCTTGGACTAGCTCACGGATAGCTCGCTTCACGA 195 37 100.0 36 ..................................... CTGAGGGAACTCGTTGTCCATCCAGGAGCTGTACCA 268 37 100.0 38 ..................................... AGGACACGCCCCACAGCGTGCCATCCGCCTCAATCTCA 343 37 100.0 35 ..................................... ATCATGGCCATGATGGCCTCCTCTCGATCGGGGGA 415 37 100.0 35 ..................................... GTTACCTCGAATCCATCCACGAGAAGGCTAAGCAC 487 37 100.0 34 ..................................... AAGACACTCACCGCTCTCATAGTCGCTGTGACCG 558 37 100.0 36 ..................................... AGTAGATCAGAAGCGATTCCGCCCGACCTCCCTCTC 631 37 100.0 33 ..................................... ACCGAGGCCGAGCGCGTCGTCGCTGTCTGGAGT 701 37 100.0 38 ..................................... TCTACCTGGTCACTCCCAGGGAAGCTTGGCCTCGTGAA 776 37 97.3 33 ..........................C.......... AAACAGCGCCGCACGGAACTCGTCGCCGGTGAG 846 37 81.1 0 .............C.....T....AA.......G.TT | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.1 36 GTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGAC # Left flank : AGCACCAGCCCTACCTGACCGCCATCGCCGAAGAACACGGGTGAACGCCCCCGCGCCACCCTGAACTACCTCACCCCACGAGAAGCCTTCGAACGCCTCCTCGTTGCTTCCACCCCTTGACA # Right flank : CGAGTGTGCTTGGCGCGGTGGTACGTCCCTGGTCCTGTAGGGCGCTTGGAAACCATTGAGACGCCTTGATAGGGCTGGCTTTTCGGCTAGTGGGCGCCGGTGCTGGCCAGGGGCTCGGCAAAGTTGTTTCTATGGTGCTGTGACCAGGCGTGTTGCTTCTGATGGTTCGTAGGTGAGGTGTCGTAGTCGTTCGGCTATGGATGCGTGGGGTCCGTAGGTCAGGCGTATGAGG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //