Array 1 107876-106338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZL010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA9 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107875 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107814 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107753 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107692 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107631 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107569 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107508 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107447 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107386 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107325 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107264 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107203 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107142 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107081 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107019 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106916 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106855 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106794 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106733 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106672 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106611 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106550 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106489 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106428 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106367 29 96.6 0 A............................ | A [106340] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125867-124008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZL010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA9 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125866 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125805 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125744 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125683 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125622 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125561 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125500 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125439 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125378 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125317 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125256 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125195 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125134 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125073 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125012 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124951 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124890 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124829 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124768 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124707 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124646 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124585 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124523 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124462 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124401 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124340 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124279 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124218 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124157 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124096 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124035 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //