Array 1 65967-65210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHKT010000022.1 Arcicella rosea strain S00070 Ga0436293_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 65966 34 100.0 31 .................................. CCTGGTAATAATTTCTGTTCTAAACCTGTAA 65901 34 100.0 32 .................................. CCTTAAAGGCTCTTCGTTTGCAAAACGTTTGA 65835 34 100.0 32 .................................. CCCACCTGAGCCACAGCATTGGCATCAGTAAT 65769 34 100.0 32 .................................. CCTAGTTCGATGGTTTATCCGAGTTGCATATT 65703 34 97.1 31 ......T........................... CCTGTAGCGTCTTTTATGCCTGAATTATCAA 65638 34 97.1 32 ......T........................... CCATATCTTGCATTGTCTTAGTATTTAAGCCC 65572 34 94.1 32 ......T........A.................. TCTTATCAAACATTTCAAATTGTAATCCCATA 65506 34 97.1 32 ...............A.................. TCACACTGTCGTCTTTTTAGCATCACGGTCAT 65440 34 97.1 31 ...............A.................. CCGAATAGTATTAATGATTCTAACTAAGTCA 65375 34 94.1 32 ......T.....................T..... CCATAGAAATAAGACATGATTGTGCCTGCTAA 65309 34 97.1 32 ......T........................... CCGTGGTTCTGGAGCTGGTCGGTCGGGGCGGG 65243 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 12 34 97.8 32 GGTGTGCAAGCCTTTGTTTTGAAAGGTAGAAACA # Left flank : GAAAACAATCAACAACATACCGAAAAGCCACAAATGCAAATAACCAAAACAGCACTAGGTTATAGCATTGCTTATGAAGAAGTATTTAAAGAAATACAAAGAGTATTTAATGATGCTGTGCATTGGGCTTTTTATATGTTAGATTGGGAGAAGAAGATTGTAGATAGTATGAGCGATGCTGAAATAGCGATTTTGGAAAATAATAAAACTCAAAATGGAGCGAAAGCACACATCAATTTTACAGAAGTTTGTACCAAAGCAGGACTCAAAGCCCCTTTACTAAATAAATTAAAAGACCTAAGAAATACCGCTTTTCATGGAAGCATACCAGCAGGTTGGACATATTGGGAAATGGAAGAAGACCAAGATATTTGTAACTTAATTGGCTATCAAAAAAAGTTAAAAATAGATTATCAAAGTAATAACCTTTTAAATAGATAGATTTTTTATCATTAAAATACAAGTTAAAGTACTTGTATTCAATTGTTTGTATCATTAAC # Right flank : TCTTTTTTACTCATGGGGCTGTCCTAAAAGAAAGCAACAGCCCAATATTCTTTGGTGCTTAACCTCACCCCCACCCCCCCTCTCCTGCAAAGAGGGGGCTTTTTTGCTCCCAAAGCTCCCCTCTCAGCAGGAGAGGGGTTGGGGGTGAGGTCTTTTGCAGAACAATATTTGGTTTTGCACTCTTCTTTGAATAAAAAACCAAACGAATCCTATCTCTGAGATAGGATTTTCCATCTTTTTGATAGGTCATCCTATCTCTGAGATAGCTTGTCCCATCTTTTTGATAGGTCGTCCTGTCTTCGAGATAGATTTTTCTATCTTTTTTATGGGTTGTCCTATTTCAGAGATAGGTTTTCCTTTGTTTTTGATAGGTTGTCCTATCTCAGAGATAGCTTTTCCTTTGTTTGTGATGGTTTGATGACTTTCAAAGAAACTTCACTAAGCTTTTTCATTTTACAAACTTCTAGAAGCTTGGTAATCAATAGGAATTAATTCGCCTA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGTGCAAGCCTTTGTTTTGAAAGGTAGAAACA # Alternate repeat : GGTGTGTAAGCCTTTGTTTTGAAAGGTAGAAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 171664-181350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHKT010000006.1 Arcicella rosea strain S00070 Ga0436293_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 171664 37 100.0 36 ..................................... TCGAAATATCCGTTCGCCGACAAGTAATTGATGATT 171737 37 100.0 38 ..................................... CATTTTTGATAAAAACCAAACGCTTCGGAATCATAGAG 171812 37 100.0 36 ..................................... ATGCCGGGTGGTATTACGCTTGTGGGTTGTGATTCT 171885 37 100.0 38 ..................................... TGCCCGTGACTGGAAGTTTTATTTACCAGCAACCAAAG 171960 37 100.0 36 ..................................... GCAAAGCCAAAGGCGGACAGGCGAGAGATGCGGACA 172033 37 100.0 37 ..................................... GACCGTGGTTTTATAATTCTTTCACTGGTGCTTTGTT 172107 37 100.0 38 ..................................... AATTCATGCGGTTGGCGTACACCTTTGGTGTAGTATCT 172182 37 100.0 36 ..................................... GAAAAATATCTTATCATTTCCCTCCTTATTGTATTA 172255 37 100.0 37 ..................................... TAAATAATACAAAGGCGGCGAGTTTTCTTTTAGTTTT 172329 37 100.0 36 ..................................... ATTGCAAATAATGATGCGTTATCATGGTCAGAGTTT 172402 37 100.0 36 ..................................... ATGCAAACGAACAGTATAGGATTATTGCTTTGATGA 172475 37 100.0 36 ..................................... AGATTGTGGGAGATGGATCATCAAAATGTATATTCT 172548 37 100.0 36 ..................................... TGATGAAATATCATGGTAGCGAAAAAGGAAGTATGA 172621 37 100.0 36 ..................................... ATTCCTTATCGGCTGTGACTTGCAATTTTGAAAATA 172694 37 100.0 36 ..................................... ACTGGTGTTAGTCTTCTTATTAAAGCTATAAAATTT 172767 37 100.0 36 ..................................... ATGGTAGAATGCTAGTTTGGTATGCAAACGTGCTAG 172840 37 100.0 36 ..................................... TGATTGAACTTTCTACTATTAACCAAATCACCATTG 172913 37 100.0 39 ..................................... GTAAGAAATTATTCAGGAATGCCACAACACAAAACCAAA 172989 37 100.0 36 ..................................... CAAAAATATGCTACCGATATAGAATCAGAAATAGTT 173062 37 100.0 36 ..................................... ATCTTTACCATCATCGGACTATCATTTTCATAAACT 173135 37 100.0 37 ..................................... TGATGAAATATCATGGTAGCGAAAAAGGAAGTATGAG 173209 37 100.0 36 ..................................... TCTGGATGTGGATAATTATTCGCTACAATTGAACTC 173282 37 100.0 35 ..................................... CTTTCACTCTCAAACTATCTATCGATACCAAAATG 173354 37 100.0 36 ..................................... CGAGCCAGATTAAAACCTTGAAAGCGAATATTAAGC 173427 37 100.0 37 ..................................... CTATTCCTTTGCCCGAAATGGTTAGTTTCGGGCTGGT 173501 37 100.0 39 ..................................... AGGGTAGAAATCGCCAAACGTTTGAGGTTGAATTTTATC 173577 37 100.0 37 ..................................... CTGGGTCTGTCTGAATTTAGTATCAGGTTGCCAGCGA 173651 37 100.0 39 ..................................... CTCAATAAAATTACCTGTTCGGTTGTTGATGCTAAAGCT 173727 37 100.0 37 ..................................... TAAGTGAAACGAATATAACAAGACCATGGATGAAACA 173801 37 100.0 36 ..................................... GTTGTTATCGTACTGGCTGGCTTATCAATACTCATA 173874 37 100.0 36 ..................................... ACAAAAACACTTTGGCTTCCATCAGTGCATGTTTAT 173947 37 100.0 36 ..................................... ATTTCTAAAGTTTTCAACATAACTATCACAAAACCT 174020 37 100.0 37 ..................................... GCAGGAAACATCGTTGAAAATACAATTACTCTTGACA 174094 37 100.0 36 ..................................... ACTTTTCATTAAATGATTTGGCAACTTGAATGGCAA 174167 37 100.0 36 ..................................... TGTAAGAATCAATACCTATTGGTAACAAATTGGTTT 174240 37 100.0 36 ..................................... AACAATATCATTATGAAATTAATCTACTTGTCGCAT 174313 37 100.0 36 ..................................... AACAATAGCTATATGAAACGATTAGTTTGGGCGGTA 174386 37 100.0 37 ..................................... CTATTCCTTTGCCCGAAATGGTTAGTTTCGGGCTGGT 174460 37 100.0 36 ..................................... AAAACTTAAAGACATACTCACTATTGTTGCTGTTGT 174533 37 100.0 36 ..................................... GAAGATGTTTTGGGCTTTTGAAGATGAAGTACTTAT 174606 37 100.0 37 ..................................... GTTTTGGAGCTGGCCGCTCCTGTTCTTCTGTTCTTGT 174680 37 100.0 36 ..................................... AAAAAGAGAGCAATGGATAAGTATTTGCAACAAGTA 174753 37 100.0 36 ..................................... AAAAGTTCAGAAAACTCATCTGTTTTCATCCTCCCT 174826 37 100.0 35 ..................................... GTAATCGACAAGCCTCATGGTGAGCATTTGTTAGT 174898 37 100.0 36 ..................................... ATCCTGAGGCTTTCCGTAAAAAATTCATTGGGGCTA 174971 37 100.0 39 ..................................... CTGCTTTCCATCTTTTCAAATCCCCAAACATCGATTTGT 175047 37 100.0 36 ..................................... AGATTGTGGGAGATGGATCATCAAAATGTATATTCT 175120 37 100.0 40 ..................................... TTGATACCAGAAGTAACCGACCCAACGGAAAGCCATTTGG 175197 37 100.0 36 ..................................... AAGCCGTAAAAAGAAGAAAAGGAAGTAAACCTTTAC 175270 37 100.0 37 ..................................... ACGGTTTTCTGAAAAGATAATGGATAAGCCAAAGTAT 175344 37 100.0 36 ..................................... AGATTGTGGGAGATGGATCATCAAAATGTATATTCT 175417 37 100.0 36 ..................................... GCTCCCTAAGCATCACACCTCTGGAGTAATCGCTTT 175490 37 100.0 37 ..................................... CTGGTATTAGAGCCGCTAATGGCTTAGATATAAGAAA 175564 37 100.0 35 ..................................... CTGCAAAGCAGATTTTTGAGTTTGTTGGTTTTCGT 175636 37 100.0 36 ..................................... TATCATCTTATTCATTAGAGGCAAAGCCTTATATAG 175709 37 100.0 37 ..................................... TTTGTGGCAAAAATATACGTTCAAACGAACAGTTTCT 175783 37 100.0 37 ..................................... CTTTTAACTTCAAATAGCTTCGTGAAGTACTAATATC 175857 37 100.0 39 ..................................... TCGAACGTACACCGGCTCTACCATTGTTGCTGGCACAAT 175933 37 100.0 36 ..................................... AGATTGTGGGAGATGGATCATCAAAATGTATATTCT 176006 37 100.0 37 ..................................... CTAAGCTTTTTCTTTGGATTGCCGTAATGATGTACTT 176080 37 100.0 36 ..................................... CACCTCTCAGCTCGGAGGGATTAAGAAGACTTCGTT 176153 37 100.0 36 ..................................... TGAAAAGAAACTATTTTCTTCATTTCATATTTCTCA 176226 37 100.0 36 ..................................... GAAAAAGTATAAATAGCATCGAACTCAATTAAAATT 176299 37 100.0 36 ..................................... ATAGACTCCTGAGTCCCTATTTTCAAGCTTTTCAGT 176372 37 100.0 37 ..................................... CTCGTGACTCTGTTGAACGTCTCCGTTTTTGGACAAA 176446 37 100.0 35 ..................................... CCAATAACTAATAAGTAACCACCTTTAGTTATTTC 176518 37 100.0 38 ..................................... GTGGTTGATTTGTTTTGTGGTGCGGGAGGTACCACAAC 176593 37 100.0 36 ..................................... GTTGTTATCGTACTGGCTGGCTTATCAATACTCATA 176666 37 100.0 37 ..................................... TAAGTGAAACGAATATAACAAGACCATGGATGAAACA 176740 37 100.0 36 ..................................... AAGCCTGTTTAATTCTTCTTCAAGGATTTCCGCTTT 176813 37 100.0 37 ..................................... TAAATAATACAAAGGCGGCGAGTTTTCTTTTAGTTTT 176887 37 100.0 36 ..................................... TCTGTATGGTTTGCCAAGTTGGGATAAGAAGGATTT 176960 37 100.0 36 ..................................... TTCACCAAACAATTTTCTTGAAAGTTCATCAGCTTC 177033 37 100.0 36 ..................................... TAAAATGGACCAAAGTCGGTTGGATGAAATATTTTA 177106 37 100.0 36 ..................................... CAGATTATTGAATTGAAAGCTGACAAGATTAACTAT 177179 37 100.0 36 ..................................... TTTGATATGCTTAAAAATAAACTAATGTATGAATAT 177252 37 100.0 36 ..................................... GTTATTTCAAAATCCCAAACCTTCTTAATCTCAATA 177325 37 100.0 37 ..................................... GCAAAGCCAAAGGCGGACAGGCGAGAGATGCGGACAG 177399 37 100.0 36 ..................................... CAAGCTGGACGGATTTCTTTGGGATAGAAAGCCGTG 177472 37 100.0 36 ..................................... TAAATAATACAAAGGCGGCGAGTTTTCTTTTAGTTT 177545 37 100.0 36 ..................................... TGAAACTTGAATCATAAACAAAATGAAAATCACAAA 177618 37 100.0 36 ..................................... GTAAGAATTTGGTTTTGTTCAAAGTTTTTTCTTACT 177691 37 100.0 36 ..................................... GAAATACAAGATAAGCCCTATCTTTTTTTTGATATT 177764 37 100.0 39 ..................................... GCAAATCTTCTACGGGTACTGAAATGGGATAATGCTTAT 177840 37 100.0 36 ..................................... ATCATATCGCAAATCAATTATGCTTTCAGTTTGCGA 177913 37 100.0 36 ..................................... TTGAAAGCTCTTGAGGAATTTGTGCCTTGGGTTCAT 177986 37 100.0 38 ..................................... CGACATCATTAATCCGGGAGTTTTAGGCTTTTCTGGCG 178061 37 100.0 38 ..................................... CAAAAATAGCCCAATCAATTGGGCTATTTTGTTAAAGG 178136 37 100.0 36 ..................................... TCCATTCTTCAAGGTAAGTCTTCGGGTCTATGTCTT 178209 37 100.0 36 ..................................... CTCACAAGTGAAGGAGTTTTGATTTTTCCCATTGTT 178282 37 100.0 37 ..................................... AAGCCAGTTGAAAGTGTATCTGTAAATACCAAACAAG 178356 37 100.0 37 ..................................... AAACCTTTGTATTCAGTCTCGACACCGTATTTTCTTT 178430 37 100.0 36 ..................................... TCATACCTTCAGGGAGCTGGTCGGTATCTTGTAGGA 178503 37 100.0 39 ..................................... AATAACTTCAATGCCATAAGCATTAAAAATGCTATACAA 178579 37 100.0 36 ..................................... AAATTAAAAAGCCAACCTTGTGGCTGGCTTTTCTTT 178652 37 100.0 39 ..................................... AAAGAAAAAGGGCAAAAAATGCCCTTTTCTAAGGGTAAT 178728 37 100.0 38 ..................................... ACTGAGAATATACCACCAGCCAACACCCCAACGTGTTG 178803 37 100.0 36 ..................................... GCTTTTTGGAAGAGAGCTTCATAAAATGCGATTTGT 178876 37 100.0 39 ..................................... AAAGACGTTCAAGAATCTCTTTTTTGTCTTTTTTAGAAA 178952 37 100.0 39 ..................................... CTATTCTACACATAAAACCCTTGAATCAACTAAAACGGT 179028 37 100.0 36 ..................................... GGTACTATTTTAGGCTGGAGAATTATTTCTGTGCCA 179101 37 100.0 36 ..................................... TTTTTCACCGAAATAGGGTGGCTCAATGCAAAACAA 179174 37 100.0 36 ..................................... TTTCAGCTTTTCAAATACGATTCACACCTATGTGAA 179247 37 100.0 37 ..................................... TAAACCGACTGTAAAGCCTCTTGATAATCTGCCTTCA 179321 37 100.0 37 ..................................... TAAACCGACTGTAAAGCCTCTTGATAATCTGCCTTCA 179395 37 100.0 36 ..................................... GCCTTTGGATTGGCTTCATTAGCATTATTAGTAATA 179468 37 100.0 39 ..................................... ACTTCTTTCTGAATTCGTTCATCCAGTTTGTTCCGTGGG 179544 37 100.0 37 ..................................... TTGGCTCAGTAATATTACGCCTGTGCCAACCTCGCTG 179618 37 100.0 38 ..................................... AATAAATACTACCTACTACTTCTAAATTGGGTCTCATA 179693 37 100.0 39 ..................................... AATAACTTCAATGCCATAAGCATTAAAAATGCTATACAA 179769 37 100.0 37 ..................................... TAGCGTGCCTCAGCTTCTTTCTTTAGCCTTTTGTTAT 179843 37 100.0 40 ..................................... GTGAGGTCAATTTTAGCTTTCAGTTTGGCGATTTCTGCAT 179920 37 100.0 38 ..................................... TACAACCCTTGCACATTTGCCGCCCCGTAATCCAGAGG 179995 37 100.0 35 ..................................... CCGTTGAAATTGACCCAAAAGAGAAAAAGACCGGG 180067 37 100.0 36 ..................................... GTCAGCATTAATGAAGAATACCTCATTGATGCGGTG 180140 37 100.0 36 ..................................... TGGACTAATTTTGTATTAATATGCGGTGTAGCTGTC 180213 37 100.0 36 ..................................... TCGGAATATTGATGAAAAAATAATTTTTCAGACCCC 180286 37 100.0 36 ..................................... TGTTACCGATATGCCTAGAAATCCAAATGAATTCTG 180359 37 100.0 36 ..................................... CATTAACTTTCTGTCCTTTGTGCCAACCTCTACCCG 180432 37 100.0 37 ..................................... CATATCTGGGATAAGAATTCGTACACATTCCTAAAAT 180506 37 100.0 35 ..................................... TGGCAGGGTGTCTTGAAGGGGGAACACCCCGAAAT 180578 37 100.0 37 ..................................... ATACCCTTTACTCTACAATTATATTCAGCACTTACTA 180652 37 100.0 37 ..................................... ATACAAAAATAGCAGAAAATATTGATTCTCTGCTATT 180726 37 100.0 37 ..................................... TTAAAGCTCTATTTCCAGCTTTGTTAATTCGTATAAA 180800 37 100.0 37 ..................................... AAGGCTCGTAAAGAAGAAGCAGAAGCAGAAACTTTAA 180874 37 100.0 37 ..................................... AAGAACTTCTGTCACTTGAAAGAATTAAACGACCATC 180948 37 100.0 37 ..................................... GTTTTGAAAACTTTGAAAGGTGAATCCAGCTTTTTGA 181022 37 100.0 36 ..................................... ACGCTTGCCATTTTACGGGGTCGTGATTCGGAAGGT 181095 37 97.3 35 ..................A.................. ATATATAAAATACTTTTCTATATAATTCTAAAAAG 181167 37 97.3 37 ..................A.................. ACGGTTATATGTCGGATGCTACTTCTCGTTACGTAAA 181241 37 100.0 36 ..................................... CAAGCTTGTAAATAAACCCGTTCTTTTCTTGTTTCT 181314 37 70.3 0 ......G...........AGGTC.A...A..AA..T. | ========== ====== ====== ====== ===================================== ======================================== ================== 132 37 99.7 37 CTTCCAAAGTAACTTCCATTAGAATAAGGATTGAAAC # Left flank : ACCCTTAGACTATAAATTTGCGGCCTATGACGACAAAGTTTTTGAGACTTATAAAACCCAATTGTACTGTTATGCTTGGTTAATAGAAGAGAACTTTCATTGTAAAGTCAACAAAGGCTATTTGGTATATACACGGAGCAATAATAAATTAGTGGAAGTAGCAATACAAGATAGCGACAAACATTTAGTAAAAGAAGCAAGTCGAGAAATTTATCAGATTATAGAGAACAATTATTATCCCAAAGCTACCAAATCTAAAATGAGATGTGTAACTTGCACTTATAGAAATATTTGCACAAAGTAATCAATTTCCGAGTAGCAATTTATTTTAAAAGGGGAAAAATAAGATATTAAATTATTCAAATTCAATTAGTTATGTTTACGGAAAAACTCAAAAAACAAACTAAAAAACGTACTTTGACCTACTGTTTAGAGAAGAAAAAGCAGATAGGATATAACATACAATTAATTATGTTACAAGGAATTAGCCAATCAGACGA # Right flank : CCGTGAATTGTTTGTCGAAATCCTAGCTGCTATTCATCAAGAAACTCTTGCCAATGAATTGTACATATTATTTGAAGGAGCCTTGGCAAGTAGTAAAATTTTTAAAGAAAACTGGACTATTGAAGCTACCCGTAGAATTGTAGAAAAATTATTATAATTTTTAATTCAAAACAAGTTCAACTTCTTGATAATGAATAAGAAGTAGTTATTCCTGATGAATGTGGTGATACTTTATGGGATAAAGTTTTGGCACAATATGAAAAGACAGACACCCATAAATAACTAAAACTATGGCTAAGAATTTCGCAGAAATCGGATTCAGCTCCGCTGCCAAAAAATTACAAGAGCAATTTGGCAGCAGGGCCAATTATTCCCGCATGGAAAGCCAAACGATATACGAAGGATTGAGCAAATATGAACAACATTTTATTGCCCAAAGAGATACTTTTATATGGCAACTGTAGGCGAAAATGGCTTTCCGTATATCCAATAACGTGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAAAGTAACTTCCATTAGAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //