Array 1 41973-41454 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRU01000004.1 Psychrobacter pygoscelis strain I-STPP5b NODE_4_length_224876_cov_56.549925, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================== ================== 41972 28 100.0 32 ............................ ACAATGCAAGCTAAAGCGCAGAAATACAACTC 41912 28 100.0 32 ............................ CATGCAAAGCTTGCACCATGAACACGTTTAAC 41852 28 100.0 32 ............................ AGTGTCGCCATCGCTTCGTTTTTCTTATCCCA 41792 28 96.4 32 .............T.............. AATGAAGACCAGTTTAATAGACAGCTTGGCTT 41732 28 89.3 95 ....CA.......T.............. CCGTTAAAACAAAGCACTGCTTTGTTAGGTTCGCAAGGAAAATCCTTTAAATAGGATTTTCAAAAGTTATGCTTCCAACGTAAGCCTAAAAAATA G,T [41705,41708] 41607 28 78.6 95 AGAA.A.......T.............. CCGTTAAAACAAAGCGCTGCTTTGTTAGGTTCGCAAGGAAAATCCTTTAAATAGGATTTTCAAAAGTTATGCTTCCAACGTAAGCCTAAAAAATA G,T [41580,41583] 41482 28 71.4 0 AGAA.A.......T............GC | T [41456] ========== ====== ====== ====== ============================ =============================================================================================== ================== 7 28 90.8 53 CTTCACCACCGCACAGGTGGCTTAGAAA # Left flank : CGTGCATATAAAAAGCATCGCTGAGGTAGGTAATAAAGCGACAGGCCATGCGGTAGTCAAACGCTATCGCTTTAAGCCAGCAGAGACTCAGGCGCAGACTCTCGCTAAAAAGCTAGGGGTTAGCTATGAAGACGCTATGGTAACGGTTAAAAAACGCAAGCCAGAGTTGAAAGTCCCTTTTATTAATATGAAAAGTGAAACAACTGGTGTTCCTTATAGGCTGTCTATCCTACAAAAATTGGTAGACAGCCCTCTTGAAGGGACTTTTAACACCTATGGTCTCAACACCATGACTACAGAGGTAACTGTACCCCATTGGTAAGTTAATAAATAGGTAATGACGAATTACCCAAAAATTGGAATTAAAAACCCTTTTTTTGAACTATTTAAAAATTTATAATGAAATCAACGAGTTGAAATAAGATAAAAAATGGAGGGTAATAAAGGGTTTTTAGCCCTCCAAACCTTGTTAAAACTACGTTTCGAGGTTTATAATTCCT # Right flank : GCCGTTAAAAAATTGCATGCCAGAAAATCACAGATTTTCTCTTGCGTCGGGACAAAGGTTCCCCAAACCTTTGTTTTATCCCTCCTCATAGGCAGCGCAAGACCAATTTATCAAAACTACTTTGAATAGGACTCTCAAAGGTTTAATTTCCTATAAAGCTCTGTATCGAAAAATTATAGACTCTCCCTTGCGACAGGCTGATACTCATTACACTTCGTGTATTCCGTCTTGCGAAGCATTGATTCTCAACCACTCATGCATAAAACCCTTAACTCACACACGCATAGCCAACCGATAAATAGCGCTAAGTAGAATTGTCAAACTCATACTTTAACAAAGACTGCAGAAGCGAAACGATCATCAGCCAGACAATTAAGACGACTTAATACCTAACCTGAACCTTTGCAATTATTAATACAAAAAGCACTTTCTAAGATTGTACATCTAATAATACCGTGCTAAATTCTACTTAAATTAATAACTAGAAACCTAATATGACC # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-1.87, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCACCGCACAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTACCGCACAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 682883-683495 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRU01000001.1 Psychrobacter pygoscelis strain I-STPP5b NODE_1_length_1204996_cov_71.163150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================================================================ ================== 682883 32 100.0 34 ................................ TTTAGTTTTAGCTGACATAGTCAGGTTTCCTTTT 682949 32 100.0 33 ................................ TTGCTCTGTCTCAACTCCGCATAGTAGGGACAG 683014 32 100.0 34 ................................ TTCAACAGCCAGCGCCATATCATCAAAACCAAAA 683080 32 100.0 33 ................................ GGGTCAAATTCAGGTGATTCAAATTCAGAACTA 683145 32 100.0 33 ................................ ACACTCCGCACAGTGTATTGTAAATAAGTTATG 683210 32 100.0 35 ................................ TTACACACTTGATTACCAATCAATGCAAAACTATG 683277 32 81.2 156 ........................TGA.CGC. GTTAAGAAAAGGTCTGGGAGACCTTTTTAGGCAGCGCAAGACGTAGCGATAGCGGAGTGAGAAACATTTAAACTCCCCCTAATGTTAATGTCGCCAATCAAGCATAGCTTGATTCTTGCGAAGCGAATAATGTCCCCCAGACATTATTTTTATCGC 683465 31 71.9 0 T..T..-.................TGA.CGC. | ========== ====== ====== ====== ================================ ============================================================================================================================================================ ================== 8 32 94.1 51 GTCGCACCCATCACGGGTGCGTGGATTGAAAC # Left flank : CTCAAAAGGTGCAGCACGATTACGTCATGTCGCTAAGAACTGCTTAAACTATGGACAACGGGTACAGTACTCAGTGTTCGAGATTGAAGTCAATCCAGCACAATGGACAATGCTTAAAGCGACGCTAGAAGATATTATTGACCCAGATGTCGATAGCTTACGCTACTATTATCTGGGTAAGAATTGGCAGCACAAAGTCGAGCATATTGGGGCAAAACCTGTGTTAGACTTAAACGATGTTCTGCTATTCTAAGTAGATAGGAACTCGTTTAAGCGTTGAATCGACTGTTATAAGGTCAATGAGAACCTATAGCGTACATAAAATCCCTAGGGGATTCGCAAAAGGTTTGCTATGCCATTTAACTTATTGATTATATTCGATTTTTTGTTTTTTAATAAAAATCTAGTGAGCGCTTTGCTTGCTAGATTTGCTTATGGTTTAGACGTTCGCATAATCCAAAGTTTAATCTTAACTTTATTAATGACTTAGACCATAGGCT # Right flank : CGTTAAGAAAAGGTCTGGGAGACCTTTTTAGGCAGCGCAAGACGTAGCGATAGTGGAGTGAGAAACATTTACCCCCCCCCTAATGTTAATGTCGCCAATCAAGCACAGCTTGATTCTTGCGAAGCGAATAATGTCCCCCAGACATTATTTTTATCGCTTCTCACATCACGGGTGCGCTATTGTTGTGACTCTTCCTATGATCAAGCTAAAACAATGCGGATACAAGGAGTTTGAGCGCAAACCAAACGTTAGTAGGGCTAGTGAGGGTGAACTGTATCGCTTTTATTGTGGGCAAACTATGTTGACTATTCACCAACCTCTAGCACTTCTTGTATCGGGCAAGTCAAAACGACTAAAACGATAGCCTCGACGATTTAGGTTAAGCACAGCTTCTCCTTTTATTCTTTCCTAATGTCTATAGTCAATCCATTTTTGATTTGATACAAAGTCGCTGAAATAAATTTACGCCCGTCTCAGTCATACCCTCGCTTCTAGCCAAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCATCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //