Array 1 31804-30443 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360927.1 Methanolacinia paynteri strain DSM 2545 PGA_scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 31803 32 100.0 34 ................................ GGAGGGTGGCGGATTGACCTGGCAGATCATCGCA 31737 32 100.0 36 ................................ CGTCCCCAGGCATAAAGATTGCTGGAGCTCCGCTTG 31669 32 100.0 35 ................................ GATACCTCGAAGATTGGGCCGGCCTGAACAAAGGC 31602 32 100.0 35 ................................ AGGATGGCCGTGATTTACATACCGCTGACCCTGTA 31535 32 100.0 37 ................................ ACCGTCGAGGTGGGTACAACAGCTACCCGCCTTTTTG 31466 32 100.0 35 ................................ GAATCCAAACATGCATGACATATTCGACCGTCCTC 31399 32 100.0 34 ................................ TGAATACTGTTTTAAGGACTTAGTCGCCGACATG 31333 32 100.0 34 ................................ ATAGCCGTAACGAATTCGGCGTCAGATAATACGC 31267 32 100.0 34 ................................ ATAGCCGTAACGAATTCGGCGTCAGATAATACGC 31201 32 100.0 34 ................................ CACTTGTAGAATCACCCGCTACGTTAGCATTTTC 31135 32 100.0 32 ................................ ATAGCCGTAACGAATTCGGCGTCAGATAATAC 31071 32 96.9 34 .......T........................ TACGGGCGAGCTTGAGCATAAACCTGATGTGACT 31005 32 100.0 33 ................................ CGTTTAATATGCGGATAGAAATCCTTGCAGAAC 30940 32 100.0 34 ................................ ATCAATCCTGTTGAATTCAAGAGCATATCAAGCG 30874 32 100.0 35 ................................ AGCTCCGGCCGACAAATTGTCAAGAGTCGCTGGTT 30807 32 100.0 35 ................................ TACGGGCGAGCTTGAGCATAAACCTGATGTGACTC 30740 32 100.0 33 ................................ CATTTTGCGCTCGCGAAAGCGGAGCACGAGCTC 30675 32 100.0 34 ................................ TTGACTCTGCAGGTCGCATTAAAACAGTATCCCA 30609 32 90.6 34 ...........T.T..A............... TCGTAATAGTTGATCACTGCGAGATCGTAGGTTG 30543 32 93.8 36 .............T.A................ TATGTTGTCCGTAAGTTCTTCAGGGTTCCGAAGTAA 30475 32 75.0 0 ......T....AA..A..AAA.....C..... | T [30445] ========== ====== ====== ====== ================================ ===================================== ================== 21 32 97.9 34 GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : CACACCCTTCGCGGGTGTGTGGATTGAAATTCAAAGATATATATCCATAACCACTAGGAGATATGTCACACCCTTCGCGGGTGTGTGGATTGAAATCCGGAGGCTTGGCCTTCCGGGCCTTGTCTCTTGCTGGTCACACCCTTCGCGGGTGTGTGGATTGAAATAAGACAGGGGAGGCGTCTGCATTTGCAAGAGACAGTCACACCCTTCGCGGGTGTGTGGATTGAAATTTATGAGTAGATCACAAGAAGAAATAGACGAATATCGTCACACCCTTCGCGGGTGTGTGGATTGAAATCTGTGCCTGAGATGTTCCGAGCCTGACGTATGGTCACACCCTTCGCGGGTGTGTGGATTGAAATACTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAAATGAAGACCTGCCGCCGATGGACGCCCCTCCTATCG # Right flank : TCATCAACCTCCCGAAACATCCCTCACAAATATGCATCTTCAGTTACTCTGAAGAAAAAAAGCCTTCCCCTCACCGCAGAGATCACACTTTCCAAGCTCCTTAGTCATCCTTTGAAAATAGCGGTGGTCGAGGAGAGTCGTATGAAGTTTTAAAGATCTTATGAGTGTACTCTTTAGATTTTCAATAGGAGAGGTTTGTTTCCTGCCATTTTGAGATTATCTGATCTTTTCGGCAATTAAACGCTTGTTTTGCGGATCTATTGTGATTTTAACCTGCTCTCCTTCTTCAAATGGAAAGTTTGAATCTGTAGCTAATGCGGAGGGTATCGTTAAATATTTTGTTTTTGCATTTCCCTGAGATACAACGCGCCCATTTCCTACCACGGACATACAGTATATTTTGCATGGTAAGTTATATATGCCAGCGGCTCAATACTGTAATACATACTGTAAATTATGCTGTAAAGAGGGGGACAAAAAATGTTTATACCAAATGTAGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 32709-31942 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360927.1 Methanolacinia paynteri strain DSM 2545 PGA_scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 32708 32 100.0 33 ................................ AGGCCAGTTTAACGGCATGGAATCCGGCACGAG 32643 32 100.0 36 ................................ TTCCATCGGGCGCAGCGCCTCCAGGGAGGTGTCGCC 32575 32 100.0 34 ................................ CACGAAGAGACATTCCGCAGGCGATGCCTTCGCC 32509 32 100.0 36 ................................ GACTTCTGGGTCGGTGCCCCGACCACCTGCATCTGG 32441 32 100.0 35 ................................ TGACAATGTCCAGGATGCACTCCTTTGCCTCGCCA 32374 32 100.0 37 ................................ AGGAGTACAGTACCACTGTTGATATCTATCCCGGCGC 32305 32 100.0 34 ................................ TCAAAGATATATATCCATAACCACTAGGAGATAT 32239 32 100.0 36 ................................ CCGGAGGCTTGGCCTTCCGGGCCTTGTCTCTTGCTG 32171 32 100.0 34 ................................ AAGACAGGGGAGGCGTCTGCATTTGCAAGAGACA 32105 32 100.0 36 ................................ TTATGAGTAGATCACAAGAAGAAATAGACGAATATC 32037 32 100.0 32 ................................ CTGTGCCTGAGATGTTCCGAGCCTGACGTATG 31973 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 100.0 35 GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : CGGAGGGTCGGGCGAGATTAAGAAAGGTTGCCAGATTGTGTGTAAATCATGGTCAACGGGTTCAGAATTCTGTTTTCGAATGTCTGGTAGATCCTTCACAATTTGAAACCCTGAAGCATAATTTAATCAGTGTTGCTGATGAAGAGAAAGATAGTATAAGGTTTTATTTTCTTGGAAAAAACTGGAAGAGAAGAGTGGAGCATTACGGTGCAAAGGCCGGATATGATCCCGAAGGATTATTAATTACATAGTCTTGCGAACCTGAAGCTCACATTATTTCCCCGGGAGGTTCGCGGGATTTTTATAGATTTAGTATATTTCTTTTTCTATGATTTTATCAATATAAGGCAACATAATTTTTTGAATTACTGCCACGTGACATTTCTAAAATAATATATTGTGTAGGATATGATACTCCATGTTTGAAATTTTTAGGAAATTTCTGATTTTTAGTGAGTTTGACAAAGACTTAATATTTTACAAAATGAAATTGATTTGCT # Right flank : ACTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAAATGAAGACCTGCCGCCGATGGACGCCCCTCCTATCGGTCACACCCTTCGCGGGTGTGTGGATTGAAATGGAGGGTGGCGGATTGACCTGGCAGATCATCGCAGTCACACCCTTCGCGGGTGTGTGGATTGAAATCGTCCCCAGGCATAAAGATTGCTGGAGCTCCGCTTGGTCACACCCTTCGCGGGTGTGTGGATTGAAATGATACCTCGAAGATTGGGCCGGCCTGAACAAAGGCGTCACACCCTTCGCGGGTGTGTGGATTGAAATAGGATGGCCGTGATTTACATACCGCTGACCCTGTAGTCACACCCTTCGCGGGTGTGTGGATTGAAATACCGTCGAGGTGGGTACAACAGCTACCCGCCTTTTTGGTCACACCCTTCGCGGGTGTGTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 199078-199345 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360931.1 Methanolacinia paynteri strain DSM 2545 PGA_scaffold_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 199078 37 100.0 36 ..................................... TGTTTTCGGGATCGGCCAAATGTGCCTGGCTCCATA 199151 37 100.0 49 ..................................... AGAATGTCCAATGTTTCGCTTAGCCATCTTTCGTCGTATGACCTGAGAT 199237 37 97.3 35 ..........T.......................... GGAGCAATATGTGCCAAACGAACTTCGTTTGTTTT 199309 37 97.3 0 ................T.................... | ========== ====== ====== ====== ===================================== ================================================= ================== 4 37 98.7 40 GTTGCAATGTCACCCGCAATTAGAAGGGTATGGAAAC # Left flank : ATTATTGAAGCTTATTTTGCTCTTTTCAAAGAGATTAAAGCCCGGATTGTATGGATATAACGGCCCGTCATCGTTCTCTTTTTTTCAGGCGATGTATCTATCGTCTGAGGTGGAGATCGTGGATTCTCGGGCTTCTGTGTGGATATTAAAAACCGCGATTTCGCCGTATTTTTCACCTTATTTAAGTTTTACTTTACAATTTGCGATTCCCGGGATATCTTGTCGGCTAAAATAATCTTCCCTGAAAAAGATCAGGATTACCTGTAATAGAATCTGCATCATGACATTCTCTGCGGTGATCTTTATAAAGGATCTTCGGTCGATCCGATCACCGCAAAAACGAAAAATCGAAGCCCGCTCCTGTCTTTTTTGGCCGGTTTCGGAGGGTCATTTGCGGTGATCTATATAAAGGGTTCACGACAGATCCGATCACCGCAGAATTTGAAAAAACGGAGCATGCAGGAGCCGACAGAAACTTTTTTCTCAAAGAAAAGCATACT # Right flank : CACCGGGCTTCGCTCCCGAAGTCATCTCCAACAGTAATGCAATGAACACCAGTTAGTAGAAAAACATGAGAACAGCACCCCTGTAAACATCATGGGATTCTTTAATTCCTTGGTGTATTCAGGCAATTAATCCTTAGAATCATTTTAAAGTAAACTATCGATAAAAATTAACTCATTCCTTTCTGACTAATATAATCTCATAGTCGTCAGGAAAAATCTGAATTTGGGCAGAAATCAGCACATTGTCTTTTTAATCTCCAGGTCCGGTATAATGCCCTTTAAAGGTTCCTCTCCGAGACGGTTAAGCTCCTCCTCAAAATCATCGATTATGAAATCCGCCTTACTATCAGTAATTAAAAATTCAAATACTATCCTGTCTTTAGAGAGATGGAGCCGGATCGCGTCGATTGCACGCTGACCTTCCCAGTGATCTCTTGATTCTTGAGATAATTGATCAATTATTTTTGAATAAGGTACTCCATTATCGTTATACCTCGCAC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGTCACCCGCAATTAGAAGGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 210100-210883 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360931.1 Methanolacinia paynteri strain DSM 2545 PGA_scaffold_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 210100 37 100.0 39 ..................................... AAGAATCATGCAGAGCAAGATTACAAGACGAAGCCTTAA 210176 37 100.0 36 ..................................... TTCATCTATCTTCTTTAAGACAATTATTGGCATCAT 210249 37 100.0 41 ..................................... AAAGGTATAGATCGGTAGGTTCCCCGTCCTTTTCAAAGTGT 210327 37 100.0 35 ..................................... CTCAATCTCGCTGTTGGGAACAGCTACAGTTTTTC 210399 37 100.0 38 ..................................... AGTTGCAGAATCAATTTTCTCGCACTCCATTCTCAAAA 210474 37 100.0 38 ..................................... TCTTGAATATCTTCCGACGTTGCGTGGGGAATTACTTC 210549 37 100.0 40 ..................................... ACCTGCGCAATGCGTTCCACATATACCTATTTTCATATTA 210626 37 100.0 40 ..................................... TTTTAAAATACGTCTCTTCTATCTCTAAACTCATTCAATC 210703 37 97.3 37 .......................G............. AAAAGAAGTCGTGCAGCGTTATTGGCGAGGTTGATAC 210777 37 100.0 33 ..................................... TGTCAATGTTCTTTATAATTTCACTACTCTTTT 210847 37 75.7 0 ...........................A.TCCTTTTT | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 97.5 38 GTTGCAATGTCACCCGCAATTAGAAGGGTATGGAAAC # Left flank : AACTAACGCAGCCGGCACTCCGATCATGAGACCTGGGTGCATTATCATGTGATTTGCAATGAAAAAGAGAGATGAACGAGATAATTTTCATCGTATGCGCATGAGTCGTCTGATAACGTGCGTTGCTGCAGGGCCGGAGATGCTTTCGTAAGCCGCATGAAGATCTCAAGATCGTCTTCTGATAATTCCGGTATGCAAAGCCTGTCATGAAAAAATCGTTTCAGTTAACGATCATTTCCCCGAAGAAGAGCAGGATTATCTTGTAATATGATCTTCATCACGACATTTTCTGCGGTGATCTTTATAAAGGATCATCGGATGATCCGATCACCGCAAAAATGAAAAAACGGAGTCAGCTCCTGCCTTCTTTTGCCCTGTTTCGGAGGGTCACCTGCGGTGATCTTTATAAAGGATCTCCGACAGATCCGATCACCGCAAAGTTTGAAAAAACGGAGCATGCAGGAGCCGACAGAAATCTTTTTCTCAGAGAAAGGCATACT # Right flank : TTACCAAAAAAGCAGGAAAAAAGTATTCACACAAGTCCGTGATTTTTCCCGAAATGCTTTTTTAATAATTACGAAAATTAATTCTTATGGCTGCTATTGTGTATCTGTCAAAGGAAGACCTGGATTCATTATGGGACATGATAAACTGGCAGAAAGTACGGAAAATCGTATCAAGAACCCAGATAAAAATTGCAAAGGCAGCTAATGAACACAATATAGGGAAAATTAATGAATTCCAGGATAAACTGGTTCATTCATTTCCTGCAAAGCTGCTTGCAGTCAGAATTGTAACGGAAAATGAGGGCGGGGATAACGCGGGAGTTGACGGAATTATCTGGGATAAAGATGAAGAATGCATGCATGCCGCATGCACCCTGGACACTGACAATTATAATGCAAAACCTCTTCTAAGAATAATGATTCCCAAACCCGGAAAGGATGAGATGAGGCCGATATCACTTCCGGTTATGTATGACCGTGCAATACAGGCACTTTTCGCC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGTCACCCGCAATTAGAAGGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 213986-214821 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360931.1 Methanolacinia paynteri strain DSM 2545 PGA_scaffold_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 213986 36 100.0 39 .................................... ATTTCGTGCTCTATCTCCATTCTCCCCCTTTCGCAAGAG 214061 36 100.0 38 .................................... AGATAGAGGATGGCTAGCAGACCATCTTTCCAGAATTG 214135 36 100.0 37 .................................... TTGAAGACATTGTTCTGAGGATCTCGTCTATACGCTG 214208 36 100.0 37 .................................... TATTGCATCTTTCTTTCCTTTGTCCAGATTCTTATCG 214281 36 100.0 38 .................................... CGAATCCGCCACCATCCATTATTTTGGTTCCGTCATGG 214355 36 91.7 35 .......GT......T.................... AATTATTACAATATTGTATATAGTATAACCTACAG 214426 36 91.7 34 .......GT......T.................... TTCTCCGGGCGTTGAAGGCATCTATGTCTTCATG 214496 36 94.4 36 .......G.......T.................... TTATTCTCGGTCCCAAATAGTGACCTTGACATTTTC 214568 36 97.2 36 .......G............................ GTAAAACAACTTCAATGCCGAGCTCTTCTAAAACCC 214640 36 97.2 36 .......G............................ AATTCTTGAGGGATGTTCATCCCATTCTTTCTTTAC 214712 36 97.2 38 .......G............................ ATAGATTATCTTCTTGACGATCTGGTACTTTATTTCAG 214786 36 88.9 0 .......GT....................C.....T | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 96.5 37 TTGCAATAACACCCGCAATTAGAAGGGTATGGAAAC # Left flank : ATCGTCAGTTACGATATAACCGATGACAAGAAGCGAAACGAAATGGTTGAGCATCTCCATTACATGGGATTATTTAGGATACAATATAGTGTCTTTGCAGGATTCGTGCCACGGAAAAGGTATGACTGCCTTGTTTCAGGCTGCATGGAGTGGTGCAGCACAGATGAAGATCGTCTTCTGATAATTCCGGTATGCAAAGCATGTCATGAAAGAATAGTTTCAGTTAACGATCATTTCCCCGAAGAAGAGCAGGATTATCTTGTAATCTGATCTTCATCACGACATTTTCTGCGGTGATCTTTATAAAGGATCTTTGAGAGATCCGATCACCGCAAAAATGAAAAAACAAAGCCTGTTCCTGCCTTCTTTTGGCAGGTTTCGGAGGGTCACCTGCGGTGATCTTTATAAAGGACCTTTGAGAGATCCGATCACCGCAGAATTTGAAAAAACGAAGCATGCAGGAGCCGACAGAAATCTTTTTCTCAGAGAAAGGCATACTG # Right flank : TCCCGGTCATATAAAGAGCGTTAAGAACCTGGGATTGTTTGTTGCAATATCACCTGTTTTTATAAGTTCACGAGAATTTCAGGAGAGAATTCTGTTTTTGGAATCTTCCATGAGGGTGGGGAACATATCGATTTCGTGAATATATTTTAGTCCTGGGAATTTCAGAATGCCGTAGGCGAAATAATCAAAGAAATGAGAATAAAACAAAAAAAACCTGAACCTTATATAATAATGCTGTCAGTGAGTTCCACTATCATTGTCAGAATGCTAAAGGTGGAGAATCTCCACCAAAAGTAAAAATGCTGTCGACGGGATCCGAACCCGTGACCTCCAGATATCTCAGATATCAAGCGCCCCGAAATGTGCTACAAAACCCTATGAGTCTGGCGCCCTAACCGACTAGGCCACGACAGCATGTGAATTTTTTTCGTCGGTTATTCGCACAACAAAGTGCATAATAAAAAGGACGGATACGCTATTAAACCTTATGATATGACTAC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATAACACCCGCAATTAGAAGGGTATGGAAAC # Alternate repeat : TTGCAATGACACCCGCAATTAGAAGGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 6214-649 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXDV01000011.1 Methanolacinia paynteri strain DSM 2545 PGA_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6213 37 100.0 38 ..................................... TCGTGACAATGGGGATCTTTACTGCAGGCCTTGGTCCT 6138 37 100.0 38 ..................................... TACCATAATGTAAGGGAGGCAACCTCTGAGAGATCAAC 6063 37 100.0 35 ..................................... CCTTCTCTCTCTCACACCCCAGCATGGAGACCATC 5991 37 100.0 38 ..................................... CGGAGGCGGAACTCTTCCCGCACGGTGCACATGACGAT 5916 37 100.0 35 ..................................... TGGGTCCACGTCGCTATACCTGTTGCCGTGTATCC 5844 37 100.0 35 ..................................... TAGCATAGATCTGGCCCAGGAAGGGGTCAAGCTCA 5772 37 100.0 37 ..................................... TGATGTTGTGTCCCTCACAAAACTGACCGTATACTCC 5698 37 100.0 36 ..................................... TTGACCGACGAATAAGATGTTCCTGCGGCAGTTGCC 5625 37 100.0 38 ..................................... AAGATCAGAAGAAATGCGACGATGACCACGAGACAAGA 5550 37 100.0 37 ..................................... TATAGTTCCTCATCCTATGAGTGTATATGGTGTTCAA 5476 37 100.0 35 ..................................... TGGTAACAAGCGCAGGAAGTGCATATGGAACAACG 5404 37 100.0 36 ..................................... CAAAAATCGAGTCTGACGTGGGGGAAGCAATGGGCC 5331 37 100.0 37 ..................................... CAAAAACAGCAAGAACGGCAATAATTACTTTGCCGGC 5257 37 100.0 36 ..................................... TTCAAGGACTAGTCCCGTTTGACGCTCGCAGATATC 5184 37 100.0 34 ..................................... ATTCGGGGGGGTATGCATCATGTCATGCCGCAAT 5113 37 100.0 36 ..................................... TTTCAAAAAAATCGCCTTCGCTCACGCTGACACCTC 5040 37 100.0 35 ..................................... GGAAAATAACTCGTGAAACTCATAATCTATATAGA 4968 37 100.0 37 ..................................... CGAGGTCCTCATCAAGGGTCAGGACTTCTCAGCTGAT 4894 37 100.0 37 ..................................... CAACGTGGTCCGCCCTTGAAGAACTTCATCCAGGAAA 4820 37 100.0 36 ..................................... AAATTTTTATTTGCTCTTTCAAAGAATCAATTTCTT 4747 37 100.0 37 ..................................... TCAAGGACCTCACCGTCACTCTTACGGACCTTGATCT 4673 37 100.0 39 ..................................... TGAACCTACCGCTTGCTTCGTTGGCATAAGGACTGACGA 4597 37 100.0 35 ..................................... AAACAAATAACTGGACTTGCAGAACTCTTTCAGGC 4525 37 100.0 38 ..................................... TCTTCGCCAACTGGCAGGGGATCATTGCTCTGCTCGGC 4450 37 100.0 35 ..................................... TAGAAGGCGCCCTTCCAGAATGCTCCTCCAAGGTT 4378 37 100.0 35 ..................................... CACCTCTCTTGGGACCATCAGAATTGAATATGGTG 4306 37 100.0 37 ..................................... GTGAGGCCATTTGGCAGGAGTGCACGCTGCAGCCGAG 4232 37 100.0 37 ..................................... TGTTGTAGAGTGGGACCAGGCCATCCAGCCGTTGATG 4158 37 100.0 35 ..................................... ATTTAAAATACTTTAAAATAACATCTTTCTTTCTT 4086 37 100.0 35 ..................................... TAATTTCGCCCCCTCAAGAAATTCAACTTTCTTAC 4014 37 100.0 35 ..................................... ACGAAAACACGAATACAGGTATATAAGCCGATAAG 3942 37 100.0 37 ..................................... CTCCGATCATCAAATACCAGGATTCAAGAAAATCAAA 3868 37 100.0 36 ..................................... TTATCACGATGCCCCCTGGGCATGGGAAATCGGAAG 3795 37 100.0 35 ..................................... AAGGAGGTGTGAATCAGATGATAGGTGATCTCCCC 3723 37 100.0 37 ..................................... AGGATGCTACAACCTGATGAACTTGCACTGGCACAGG 3649 37 100.0 37 ..................................... TATCATCGATTGTAAATGATTCACTCATATCAGCCCG 3575 37 100.0 35 ..................................... TGCTATGGGACGAATCGACTCTTCAGGAGATGATC 3503 37 100.0 38 ..................................... TCTGCTGCATTATCTCCGCTCCTATAAGGGACTGCGAT 3428 37 100.0 37 ..................................... TGAATACCTCGACAAGATTGTAAAAAAGCATGGGAAC 3354 37 100.0 38 ..................................... CGACCTGCCCCCTCTGGACCAGCTCACAGATATTACGC 3279 37 100.0 37 ..................................... TCATAGGTTCCAAACCATTCTGGATCATCTGAAGGGT 3205 37 100.0 36 ..................................... TTGTATTCAGCTCGAGTAAGTGCCTGCTCTCCTGAT 3132 37 100.0 39 ..................................... GAGATTAGAAATCAATCCAGGGGGCTTGTCGATAATGCC 3056 37 100.0 37 ..................................... AGTAATACAGATTGTATATGATCAGTGGCCGATCCGA 2982 37 100.0 37 ..................................... GAGAAAATATTTCCACCTGTTGAATAGACATTTTCAC 2908 37 100.0 35 ..................................... TTTGCAACAGCCCGTAGGAGGGGAGGAAGCCTTCC 2836 37 100.0 38 ..................................... TCGACAAAAAGATCCCTATCAAATGTATGTACCAAAAG 2761 37 100.0 36 ..................................... TTGTAATGATTGTCTTTGAGGTGATAGGTCTGGGTT 2688 37 100.0 35 ..................................... TAATCAGAATAATGAGTGAGAGAATCTTAGAATCA 2616 37 100.0 38 ..................................... ATCCACCGGTTGATATTGCCGTGGTGACCTGGGCCGGC 2541 37 100.0 36 ..................................... ACGAACCGTGAAACCATTTTAAAGGTTTCTCCCTGC 2468 37 100.0 35 ..................................... AAACAATTCCCCATATTCAGAAGGCATGAGATTTT 2396 37 100.0 38 ..................................... TCCGGTGAATACTCCCCAGAATATTCTACATTACCTCC 2321 37 100.0 38 ..................................... TTATTTGACATGTCAAGTGAAATCTCCCGGGTTATTTT 2246 37 100.0 37 ..................................... TGGGCCGGAGCCATCCGTCATTCTTGAGAGCTGTGAG 2172 37 100.0 39 ..................................... GACATTAACCATGAAACTCATCCTCCAGGAGTTCCGGAA 2096 37 97.3 38 ................T.................... GCCAATTACGATGAAGAAAGCGACAGCGACATCCGGAC 2021 37 100.0 36 ..................................... CATGATTTTCTTCATAAGGCGGATCAGCAAGAATGA 1948 37 100.0 40 ..................................... TCGTCAGATAAAAAAGTATTATGGGGCATATCCCCCTGGA 1871 37 100.0 36 ..................................... CATATTCCTGTTGGCATGTATTGATGTCGGCGCAAA 1798 37 100.0 36 ..................................... ACATTACTTAGCCTCCCAGGGTGTAGTTTTCCCTAT 1725 37 100.0 37 ..................................... AAGACCCCTTGTAATACTCCGGGTCTTCGTAGATATC 1651 37 100.0 38 ..................................... CCACACAGAACCCTAAAAATCAAGGAATGAATATGAAA 1576 37 100.0 36 ..................................... TGGACCCTGGACTGTTTTGAAAAGAGAACTGAAAAC 1503 37 100.0 38 ..................................... TTGAATGTAAGCGTTTCTATGCCAGATCGCGCAAAGTC 1428 37 100.0 39 ..................................... TCGGGGTTGGGGGTTTTGGAGGTACGCAGTATTCGAGCC 1352 37 100.0 41 ..................................... TGCAAAATATAGGGGGAGACCCCTCCGGGGTTCTCCACACG 1274 37 100.0 35 ..................................... CGTCGAGCTTGGATGCGTTGGATGGCATCTCGAGC 1202 37 100.0 37 ..................................... TCCCGGCCGGTATAGTGGTCGGGATCGAAGACGAATC 1128 37 97.3 36 ................A.................... CTACATCTCTGAAATTTGCGAAAGCGTCAGAGTAAG 1055 37 94.6 37 ...........A.......A................. TAAGATCAACGGCACGAAAGTAAAGGCCAACGGAGGC 981 37 94.6 37 ...........A.......A................. TTTTCATGGTTCGTAAAAAGGCGGAGGCTGAGCCAAT 907 37 94.6 37 ...........A.......A................. CTGTGTCGTCAGCAATCAGTATACAGGGTGAGAGAGA 833 37 94.6 37 ...........A.......A................. TCTTCGGAAGGAATACAAGGATCACGATTGCCAGAAT 759 37 94.6 37 ...........A.......A................. ATTCCGTTTCTTCATACCTGGGGGGATCTGACAGCTC 685 37 91.9 0 ...........A......................T.G | ========== ====== ====== ====== ===================================== ========================================= ================== 76 37 99.5 37 CTTGAAGAACTTCATCCAGGAAAATAAGGATTGAAAC # Left flank : ACAAAGTCACAGCTTTTCCTCCAGGCGATTTTAATCGAAGAGAATTATGATCGAGTGGTTGAGAAGGGTTTTGTATGTTTTACAAGGAGCAACTATAAGCTGGTGGATATTGAAATCCGGGAAAAGGACAAGGAGAATGCCAGAGAGGAGATCCTGAATGTTCTCGAAATCATCGGGAAGGGATATTATCCGAAAACCAGGAAGAACCCGAACAAATGTGCAGACTGCTGTTACCGGAATATCTGCGTCTGAGGAGGGTTCTTCGAGATTAAATCTATTATCCCTGAGGAGAATATTACTACTTGGCTTTCGGTTTCACTGATCATGAAATCCGATTGTTGAATGATATTGCAGGTGTGATATTATCCGGAGAGTGAATCAGAATTTTTGGTTTTTTCTTGTATTTATAAGGGGACCGATAATTCTGCCCGAAGAAAACTATGGTCTGAATTTCGGGCCGCAGGGCCGGTTATACCTGAAATGGACGAATTTCACCTGCT # Right flank : CCCTGTGTAATCACAGTAATTTATTGTCTCAATCTTTAGATCGATGAACCTTTTTTTCTCCCATAAAAACTCACCGGTATCCCATACAGTCACGCCAATTTCTTTAAACAGCCATTAATTATTTGCCTGTTCCTTCCCCGGGGAAAGTCAGGCAGGAGAAAAAACAATGGCGGATTTCATAGAAACTTCCAACACAAAAACAGCGACACGTAAACTTGCATCGCCCATCGCAGATGCAGCAGCGTTTCAGTGCATCATCCAGTCGGTGATCGACAACAACCCCTTCGGGTGTACCGAATACATCCAGAACAATGCAACGCACAGCGGGGTCGAAGTCAACCGCGAGAGCTACACCGCAAAGATAGTCTTCGAGGACAATGCGGCGGAGAAGATCGGATCACTTTCGATCAAGTGCCCGACAGTCTCCTCGATGAACAGTGCGACCGGTGCAATAATCGCAGACGCCGATCTTGCCGTCGCCGTCGGAGGAGACCCCGTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGAACTTCATCCAGGAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //