Array 1 580589-580093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVPE01000006.1 Rubeoparvulum massiliense strain mt6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 580588 30 100.0 36 .............................. GGAAAAAAACGATACAGTTTTTTGGATAAGGATACA 580522 30 100.0 37 .............................. TCTTTCAAAAACTGGTATACCTTGTGTGGTGTCCCTT 580455 30 100.0 37 .............................. TATCTAAGGGCTGTCCACATTTCTCGCAACGGCCATC 580388 30 100.0 36 .............................. TTCCTAATCTACTTGTACAAGATACTCGTATATTTT 580322 30 100.0 36 .............................. ACGTGATCATAGGGGCTGAGACTTCTGGTTTGTCTA 580256 30 96.7 37 ....................A......... AGGAGATGGCGGTCAAATACCAGGTGAGTGCATCGTG 580189 30 100.0 37 .............................. TCAAGTAGAATCGAGAATCCCAGACCGATTTGCTTTA 580122 30 83.3 0 .................A...T.C.C...T | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.5 37 GTTTGTATCGTAACTATGAGGAATTGAAAC # Left flank : TGGGTTTCTTCTGTAATTCTTCTTATTATAGCAGGTCGCTTATATCACAAGGTCTGCACAGCCAATTTTTTCTAAACGGATTATTAAGTCTGGTAATAAGAATGACTAAGGCTCAAGGGGAAGCTGATATGGATATGATTGAAAATAAGTTTTTCGTAATAATAAAGAAGAAGAGCAATAAATTTCTTACATCGATATCAATGGTTACAAGAGCATAAGCATCAATGATATGTTTGCTGATGATTTATCCCACAAAGTAAGGAAATTAGCGTACATTCTACTTTAATATGAAACTAAAGATTATTTGACACCATGTCGTCGATCGGGAGTAGCGTAGTAAACCCTAGAGATCGACGACATTGAATTTTTAATTATAATTTAGAAAAAACCAAGCGTAACAAGGTGTAGCGCATTTTTGTTATTATATCTAGGTTGCTTGCAAAGGGAAGATTGACTATATTGTATTTGAGGAGAATCTTGATTTATCAGGGCTTTTATGG # Right flank : CCTACTTATCTATCAGTTCATTCTAATCTAATAAAAAACGTCTTCGATTCAATTGTAAGCCTACGCGCTTTGAATGAATGGGCAGATCCATAATTAATTACTTTTGTGAACCAGGTTTGTATAATGTGCCAAAGAGACATTCAGGACAGTATGCTGGTGGATTGACAATTTCCACTTTAAGCATCATATCGATTTCATTTTCTTGTGGTGGTTCTGTTACTATAAAGTCGGGTAGAAATAATAAGCCGTTCAGGTTATTTAGCCTTTCTTAGATAACGTTTGAATTTTGAATGTTGCAAAAATTGTGTTAGAATTTTTCTCTTATGAATCCATATTTCCTCAATGTCCTTTTACTTGAATAAGAACGCGATTAGCTAATTACTCTGACCCTGTTTTCGATTAAACATTAAAGGTATAAATAAATATAACGCATATGCAAAAGACATCCATGTTGTAAAAGCAATAACCTGTGATTCATCTAATTTTGGAAAAACCATATG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 586002-584424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVPE01000006.1 Rubeoparvulum massiliense strain mt6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 586001 30 100.0 36 .............................. CCTCTGCAAGTACTTGATCCTTATCGCCAACGATGA 585935 30 100.0 37 .............................. GTTGGCTCATCAAGAGTGGAGAAAATCTACTAGAAGC 585868 30 100.0 37 .............................. CTATTCACTGATAAACGGTATATGAATAGACAAACCT 585801 30 100.0 38 .............................. GCAAATCGAAGAACCCACCTAACACCGTACCAAATCAA 585733 30 100.0 36 .............................. ACATTAGCTTGCACCTCCAAAGAATTTTCTGGTGCC 585667 30 100.0 36 .............................. ATCGCAAAAAGCATGGAAAAAGGATGGTTCGGAAGC 585601 30 100.0 41 .............................. TCTTCCAGCATTTCTACCTTTGTTCGAATGAACTCTTCTGA 585530 30 100.0 38 .............................. TAGGGATGGTGAAGGGTATGTCTGCGATTGCATAAACG 585462 30 100.0 37 .............................. ACAGAGCTAAGCGCGAACGCGCTCGTCAAGGAAGAAC 585395 30 100.0 37 .............................. AGAACTACGATACTGCCTAACTCCACATCGTATTTTG 585328 30 100.0 39 .............................. CTCGCTTTTCGCTCCCTAACAAGGGAGTCGTCTATATCA 585259 30 100.0 37 .............................. CGGTGGGAAAGGGGGTGAGTAATGAATGAAAATCGAG 585192 30 100.0 38 .............................. GGTGTTACGGTGGAGACACCAACCGGGGCACAAAGTAA 585124 30 100.0 36 .............................. ATATAACTATCCAAGTATTGCAACCGTCCTTGCAGC 585058 30 100.0 36 .............................. TAGAGGTAGCATATCCAATACCATATCCAAAAACAT 584992 30 100.0 37 .............................. AAGTTGGGGAAGGAGACCTATGGGACCATGCCCATTG 584925 30 100.0 36 .............................. TGACCTCCCATAAGGTCATGGGCGGAAGCGGAAGCG 584859 30 100.0 36 .............................. TTCATGGTCAGAAATTGACCACCCCCCCGGTCAGAA 584793 30 100.0 38 .............................. AAGTCGTATCGTATCTGCTGTATGTGGCTACTGTGATG 584725 30 100.0 37 .............................. AAGCTATTAAATGTGCCTTGTCCATTGGATTAATTGT 584658 30 100.0 37 .............................. ATAGCAACTTCTGTTTTACCGATCCCCCCCCGAAAAA 584591 30 100.0 38 .............................. GGTGTATTTTCCGCAGTGTGGGGAGTAAGGAAGTTGAA 584523 30 96.7 36 .............T................ AGAATTGTCTTTAGCTTGTTCATAGGTGAAATTGCT 584457 30 90.0 0 ...................A.C....C... | TC,TT [584431,584434] ========== ====== ====== ====== ============================== ========================================= ================== 24 30 99.4 37 GTTTGTATCGTAACTATGAGGAATTGAAAC # Left flank : TGTTCAGAAGACTCAATTTATCTCACCTTTTGATAGTCACTTTTCAGATATGATTGAACAGAATTTTTATAAAAAATATATGGCCTATTACCATCGCCAACCTGATGGGAGAATGAAAATCACACCACAGAAGGTGACCATGAAGGATCGTGTTGTAACAAAGTATAAGAATTTGTATTTAACAGGCTGGATGGGGCAGTATACGATTGAGAGTTCATTCGATACATTACAATTCTTATATGATGTGGGGATAGGTGCTAAAAACCCTCAAGGATTCGGTATGTTTGAGATTCTTTAATACCTTTTCACCTTGTCGTCGATCGGGAGTAGCGTAGTAAACCCCGGAGATCGACGACATTGTATTTTATTAGTAAAATCGAGATAAAACCAAGCATATCAAGGGTTAGCATGATTATGTATTTCGCGTTGGGTTGCTTTCAAAGGAAGAATTGACTATATTGTATTTGAAGAGAATGTTGATTTATTAGGGTTTTTCATGG # Right flank : AATAGTAGTACAATATCTGGCAATCTCATCCTCTTTACAACAAACAAAATTTTAATAATCGTATTGCATGAGACGCCGGATAAGCAGGAATTACTTGTGGCGTTATCTTGTGACATTGAAAAGTGAACACTCCAGGGTCAGGTCTTTAACACTTTAAGATCAGGTTGCGCTTGAAGCTATGACTTCCAAGATAGAGTGCTTCCTCTCACTCTCACACTGAAAGCATCTATTTCATAGGGAGCAGGTAATAATGAAATGAATTGACAATCTGTCAGTTAAACGATATGCTCCTTATTAGGAGGGGAGATCGTATGCGTGATGTGAAAGATCCGGAGGTTCGCAGAGCAGAAATTATGGAAGCAGCACTCCGATTGTTTGCAGAAAAAGGTTTTTTGAACACGACAACACAGGATATTATTGATGAAGTAAAAATATCTCGTGGTTTACTCTATTACCATTTCGAAAACAAGGAGGATATTCTATACTGCTTAGTTGAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 596837-595260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVPE01000006.1 Rubeoparvulum massiliense strain mt6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 596836 30 100.0 36 .............................. CTCATCGCGGCCACCGCCTTGCAGACGTTCAACCTC 596770 30 100.0 39 .............................. ATATACGCGTAGCATACGTTGTGAAACTTGCTGGCCCCC 596701 30 100.0 36 .............................. CGCTGTGATTGTCGCTATCAACGTAGTATGTTCCCT 596635 30 100.0 36 .............................. CTACGATCACCAACTCTAAGCTTACGAATCTTAGAT 596569 30 100.0 37 .............................. TATTTCCATCCGCGTCTTTGAGGACTTTTGTATCTGG 596502 30 100.0 41 .............................. TCTGTCCCACTCATATCTGGTAGATTGTGATTGATCTCATC 596431 30 100.0 37 .............................. TCGGTGAGTTGAAGCCAAAAGCTGATTACACAGATAA 596364 30 100.0 36 .............................. TTCCCAAGATAATTTCCCTACCTCTTCGACATTGGC 596298 30 100.0 38 .............................. AGTGATATTTTAGAACTTGCAAATGAAGTGATTAGGAA 596230 30 100.0 39 .............................. TTTTCTGGATAACCAATCATTCTAATGAACTCATATTGC 596161 30 100.0 36 .............................. TGGAATGATGGAGGAAGCTCAGGCTGGCTTTTTTCG 596095 30 100.0 37 .............................. TCGTATCCTATCGAAATCGCTTTGTTGGTATTTAGAA 596028 30 100.0 37 .............................. TCAAGATGGGAATATAAAGAGAAAATATCACCACAGT 595961 30 100.0 37 .............................. GATGCAAATGGCGAGAATGTACGTGTATTCGGTGACA 595894 30 100.0 36 .............................. TTATTCCTTCTGGTGTCGCGTTGGTGTATTTGAAAC 595828 30 100.0 35 .............................. GAAAAATGCTTCTGCTTGGTAGGCGTAAAGCTAGT 595763 30 100.0 37 .............................. GTGGATGATCCAGATAGTAAAGGTCAAATACCTGCAA 595696 30 100.0 39 .............................. TAATTTCTCCAATAACGTTGCACTCACTGGAACCGATCA 595627 30 100.0 37 .............................. CACATGAGTCTAAAGATGAATTATACGGTGATATGGA 595560 30 100.0 40 .............................. AACAGGTAGGAGCCATCGAGAAGGGTGTGAGCTTTCACAA 595490 30 100.0 40 .............................. CTACTCGTTAAGAGAGGACCACTTGGTCGACTTGATACAC 595420 30 100.0 36 .............................. CACTGGCTGATACACCTGTAACAAAATCAATCACCA 595354 30 100.0 35 .............................. TCGACCCCTGCTTCGGTTGTACTTTGACCTGCAAC 595289 30 93.3 0 ................C............G | ========== ====== ====== ====== ============================== ========================================= ================== 24 30 99.7 37 GTTTGTATCGTAACTATGAGGAATTGAAAC # Left flank : AGAGTTTAGCAGATATCGATCAAGTTTTAAAATGGATGGTAGATGCATTTCAATATATCGGTGCAGGGGCCAAAACAGCAGTGGGTTATGGACGATTTGAAATAGATAAAAGTCATGATGAATAAGTGATATCAGTTTAACAACAAGAATCAGGAAATTAGTAGAAATGATAATAATGAAGAGAAAAATATAAATTTGCAAGATAACGGAAAATAATATGTATAACAACTTTTTCATAGCCACTTGATAGTTTATTAAGATGTTTAGCGAATATTTTACTTTTTGCAGCCCCTAAATATGGTTCATCCTCATGTCGTCGATCGGGAGTAGCGTAATAAACCCCGGAGATCGACGACATTGTATTTTTTATTGATAGAGTCGTGTACAGCTCGTCGTAGCAAGGGTTAGCACTATTACGGAACTAGTTCTTGGTTGCTTACAATGGAAAATTTGACTATACTCTATCTAAAGAGAATGTTGATTTATTAAGGATTTCATGG # Right flank : TAAAAATCACATCATTCTATATGTAATCGTATTATTTTTTACAACCACAAATTACCGAATATGTTTAAAAGCATAGAATCAGCAATTAAGTAAACAGAAAATTCAGTACATAACTTAATAAAGACGACATTTGTACAATCTTTCACACAAATTAGGAAGGATTTTCTTGCTACATATCGAACAATATCAATATACAGTTGCTATTTCTTTAGACCTATGAATTAATGTGAAAAAATATGGATGAATTGGATAGTAAGAAAGATGAAAAAGGTAAGATGAGTTAACTCACTGGAGCAAAATAGAAACATACTGAGGATTTTATGAGGAGGAGGTGTGCTCTTGATTCAAACCGTTTATGATCTGGGTTCATATTACTTGTTACATAATTCCTCTGTTCTAACAGGTTTGGCTATCCCACTTCCGGTTTCCCCAAAGAAGGAAGAGTATGTCGTCGTTCTTGACTTTGATACGAACACTAAAAAGTTCAACGTGAAGCCCTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 606960-605526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVPE01000006.1 Rubeoparvulum massiliense strain mt6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 606959 30 100.0 38 .............................. CAGGCACCTTGGTTAATTGGATCGGTAACGAATCCCGT 606891 30 100.0 39 .............................. GCTGAATTTCTAGGTGTACGATATGGAACTGTTGTTGAC 606822 30 100.0 36 .............................. GTTTCTTTCATTCGATATGTGTTTGTTCCAAGATGT 606756 30 100.0 36 .............................. CCGTTCCGCTTGGTTGCTTCGGTGAGGGCTGTGATC 606690 30 100.0 36 .............................. TTTTTAAATCTCTTGTAAACAAGCCTTTGGTTAACC 606624 30 100.0 35 .............................. ATTTGTCGCAGGCGGTCGGCTCTCAACTCGTCCTC 606559 30 100.0 39 .............................. CCTTTAACGGGTCGCGGATACCGTGGGTGGCGACGCTGC 606490 30 100.0 38 .............................. ACTCTTTCAACTTCCGACTGCAACCACTCGAGGAAGGA 606422 30 100.0 35 .............................. CGATAGCGACCTGTGGATCTGCAGAGAACTTCGGA 606357 30 100.0 39 .............................. TAAACATCCATACGGGACAATTGGTGACTGTAAACAAAA 606288 30 100.0 37 .............................. CTTTTCTGGAGCTGTTTCCTCAGCTCCTTTTCTCGTT 606221 30 100.0 36 .............................. AGGACACGTTGAAGTTTGAGGGTCTTGCTGACGGAC 606155 30 100.0 37 .............................. AGAAACCAGATATCGAACAACTTGAAGCTGACCTTGG 606088 30 100.0 38 .............................. TTGTTTGCTAGATTCTTTTCTTCAACCTGGATGCCACC 606020 30 100.0 36 .............................. GAGAGCCTTCTTGCTAGGGTACCAGACGAGTACGAA 605954 30 96.7 36 .............................T TTGACCCTGTAGATGCGATTATAGACGTGCATAAGG 605888 30 100.0 37 .............................. CAACAGTGGCTGCGTGTTTCATAAAGGTTTTATAATC 605821 30 100.0 36 .............................. AAATGACGGATGTATAGCGGAAAGCAGGATCTAACT 605755 30 100.0 36 .............................. TAGAAAACCGATGGACGTATGCCATGCTTTTTCCAG 605689 30 100.0 37 .............................. GAATCAAAATTTGAGAACGACCCTTTAATGCGGTATA 605622 30 100.0 37 .............................. CAAGAGGATTGAGAAATCCAAATCCATTTTGTTGGTA 605555 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.7 37 GTTTGTATCGTAACTATGAGGAATTGAAAC # Left flank : GGGCTGGTGTTACCGTTCCCATCACCAGTTTCGGTCACTCCCTCGTCACAGGCGCTTTACAAGAGGCGGAACGTCATGGCTATGTCGGAATCATTACTGGCATTTTTGAAGTGACCTCCGCTGGTATCTCTGCAGCCATTATTTTTGGTTTCTTAGCGGCACTTGCGTTTAAGCCGAAGGGGTAAAGGGGTCTACATGCTCCATGTGAATACTCTTCTCTACAAAGGGGGAGTAATTACACGGAGCATCGAAATAAGGGCGACGATGGTTCAGATGGGGTATTCACTTCACCTCAACCAAGCCTACTTGAGATGTCGTCGATCGGGAGTAGCGTAGTAAACCCCGGAGATCGACGACATTGTATTTTTTAAGAAAAAATGAGATAACGCCAAGCGTAACAAGGGTTAACGCTATTTTTTAATTTAATCCAGGTTGCTTGATAAGAAAAAATTAGCTATATTGTATTTGAGGCGAATGTTGATTTAATAGGGCTTTCATGG # Right flank : TGTATTGGTCTTAAGACATGAAAAAATATGTTAATGATTAGTTTTGTGTTCAAAGCGTTGGTGATTGGCTGGATTTCAATCATACAATTGCGTAGTAAATATCAGCGATAAGTACTTCTTATTGTATGTACTCATATTCGCTACTTGGGCTTATAATAAGTTAAGCTGGTAAGGTCTTTGGCTGAGCCATTATATACAAACATAGATTGATCTTGAATCTTACCTTTATTTTCTGAAAGTCTTCTCGAGGATGCTTCCTAATACACTAAGAAAATGGTGTAAAATAAATGATATTCAATGACATGAGGGATTAACACTGCCCGCGAAAGAATTAAATAGGCTAGAAGAGTAAAGTGGACAGCATTGAAGACAGAATTATAATTTTTGATTGCTTTGCCATGAATGTCGAGATGTGTTATTAGATGTAAAATCTGTACTTGATTATAGCTCTTTATCAGTGGGAGTATGAAGTTTCAAGATGGTGATAGTTGATCTATAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 342162-335962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVPE01000004.1 Rubeoparvulum massiliense strain mt6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 342161 32 100.0 35 ................................ CAGTGGGTGGAATCTCCATAGACTCTCCTTGAGAC 342094 32 100.0 35 ................................ AACTCTCCTAAGTCCTGAACATCTACCACTGTATT 342027 32 100.0 33 ................................ TATACAGACACGTTGCTCTATATCCTCAAGCAC 341962 32 100.0 35 ................................ TTTGGCATGGCGAATTGCATCTCACGCTTGAAGTC 341895 32 100.0 34 ................................ ATGCTGCCATATACACTGCTTACGTTATGTTGGG 341829 32 100.0 35 ................................ GCCGGATTGGAGTCTGGCAGATTTTGCCGAGTATA 341762 32 100.0 35 ................................ CTCTCTATATTTTATTTTTTGTTAATGTATTCTAT 341695 32 100.0 34 ................................ TGTATGCAAAATCTATAATGCTATCACTTATTGC 341629 32 100.0 34 ................................ ATCTCAAACACTGCACTTGTTTCTTTGTACTTTT 341563 32 100.0 35 ................................ TTTTGTTTCCTTTTTTTTTGGTGCAATCTGCTCTC 341496 32 100.0 33 ................................ TTTTTTAGATCGTCATAGGGGAGACAGTGGTAC 341431 32 100.0 34 ................................ CAAACTTATCTGTTAGTTCTTTAACGTCAATATT 341365 32 100.0 34 ................................ ATCTAAAACCAGTATGAGTAGGATTGGAAGAAAT 341299 32 100.0 34 ................................ AGTATATGAAATACGAATCTCCATTCGATAACCA 341233 32 100.0 34 ................................ CCTCCTTCCCATGATGAGTTATCAAGTTTATCCA 341167 32 100.0 33 ................................ ATGATGGAATGTTGTATATTGCCGAAGCACCTC 341102 32 100.0 33 ................................ TTTCGTAAGGTGACATATGATTTACCTCCTATC 341037 32 100.0 34 ................................ AAGTAGAGCTCCATTTGCCCCATGTGGTGGATGT 340971 32 100.0 36 ................................ AAAAACACTAATGCTTTTAATTCCGCCAGCTGGATT 340903 32 100.0 33 ................................ ATACTAGAAGAAGGTGAGTAAAAATATGGACCG 340838 32 100.0 35 ................................ GGGTCGATTATGTCATACCTGTAATACCATTTTGC 340771 32 100.0 34 ................................ CAGTCACAGGTGGACCTGATATTATCGAAAAGAC 340705 32 100.0 35 ................................ ACTCAATGCGACAACAGTAAAACTCCTAAGGTAGT 340638 32 100.0 33 ................................ AATGCCATCGGTATCTTGTAGCACCGTCATACA 340573 32 100.0 35 ................................ ACAGGCAATGTGCATGGTTTTCATGATTTATCACC 340506 32 100.0 34 ................................ AGTCTTTTTGATGAAGAGCACTACAGTTGTGATA 340440 32 100.0 35 ................................ TTAGCATTTTTTTTGTATCGCTTATTGTCGCTGGT 340373 32 100.0 35 ................................ AATTAATCGAGTAAATTTAAAACCTAATCGACGAT 340306 32 100.0 34 ................................ CTCCGGAATGGACACAAACCGATCTCCTTCTCTC 340240 32 100.0 34 ................................ CTTCATCAGCTTGCGTCATAGCAACTGACTTAAC 340174 32 100.0 34 ................................ CATCCAAAAATGGATAGGTTACTTGGCATAACCT 340108 32 100.0 35 ................................ AACTTCCCCAAGCTTACCTTGAACAAAAGGAACAC 340041 32 100.0 34 ................................ TCTCAAAGAAAACTCAGGAGCGTTTATTGCATCC 339975 32 100.0 34 ................................ ATCTAGGCGAGCAGTTAGGTTTTACCTGGGAACA 339909 32 100.0 34 ................................ ATTGGCTTACCTCCTTGGGGTTGTCCTAAAACTT 339843 32 100.0 34 ................................ AAGAAATACGAAGTGATACAGCTAACCAATGCAA 339777 32 100.0 36 ................................ CCTATTACAAACGAATTGCTGAAAGATAGCGATCAA 339709 32 100.0 34 ................................ GTGAATTAAACAAGGAGTTAAACAAAATTATGCG 339643 32 100.0 35 ................................ TCCACTCTTGATGAGCCAACTAAACTTCTGCAAGC 339576 32 100.0 35 ................................ TAAATCTGCGATAGCGTGACTTTAATGGAATAATC 339509 32 100.0 35 ................................ AACATCAGCTAGATTAGTTTGATTACCCTCTTCCA 339442 32 100.0 34 ................................ AGAAAAAGAAGTGACTTTATACAGTTCCATCGCC 339376 32 100.0 34 ................................ ATCAAACTCATTTAGATTACCCCTCCAGTTGTAC 339310 32 100.0 34 ................................ AGAAAAAGAAGTGACTTTATACAGTTCCATCGCC 339244 32 100.0 33 ................................ CAATAGTTCCTTATTAACTCGCATACTCATGTT 339179 32 100.0 34 ................................ CTAGAAGAAACGAAGAAGGTTTATCAATATTGCC 339113 32 100.0 34 ................................ TATCAATATCTAATGAATACCATAAAGATTTCTA 339047 32 100.0 34 ................................ CATATGCACGTAACCAAACTGCATTTACTGCCTC 338981 32 100.0 34 ................................ AACAAAAATCAAAGACACTTATTATGATAAACTT 338915 32 100.0 35 ................................ TCCGCGTGCTCTAATGCGCACCTCATTCCCCTTTT 338848 32 100.0 35 ................................ TCCGCGTGCTCTAATGCGCACCTCATTCCCCTTTT 338781 32 100.0 34 ................................ TACCACATACTTGAACGATAGGTTCCGCTGGATT 338715 32 100.0 35 ................................ AAAAAAGGCAGGTTTATGGAATCGATAACTTTTAC 338648 32 100.0 34 ................................ TGCTAAACAATCTCCTAAAGGTACTTTTGTATAA 338582 32 100.0 35 ................................ CAGAGAGATATACCTAATCCAATTAATAATACGGT 338515 32 100.0 35 ................................ TTAAACCAGTCAAAACTATATAAGTAAAATTCTTT 338448 32 100.0 34 ................................ AAAAAAGGCAGGTTTATGGAATCGATAACTTTTA 338382 32 100.0 34 ................................ AAAAAAGGCAGGTTTATGGAATCGATAACTTTTA 338316 32 100.0 34 ................................ AACTAAGCAATATTATACCTATGCAATCAGTTGA 338250 32 100.0 33 ................................ TATGTTATCCCCTTTACAAAATGTAATATGTAG 338185 32 100.0 35 ................................ CAAGGAAAATGACATGATGTATCGCGCAGAATATG 338118 32 100.0 34 ................................ ACCATCACTTGCAATATTCCTTCATCACGTTTTA 338052 32 100.0 33 ................................ TCGGAAGTTGGACGTGTACCAAGATTTGATGAT 337987 32 100.0 34 ................................ AGGTCAAATATAATAATCGACAAGTCACCTGGGT 337921 32 100.0 33 ................................ AGCTACCCCATGATTCAACCTATATTCAATTAT 337856 32 100.0 33 ................................ TTTGCACCCAGTGTGCTAATTATCTGTTTTACT 337791 32 100.0 36 ................................ GCATTTTTTGGCGCGTACAGTAGCAAGTACAGCAAA 337723 32 100.0 35 ................................ CCTGCAATACTAAAATCTTGGCAAGGTGACCCGTG 337656 32 100.0 34 ................................ CGATCATTGGCGGTGTATCTTGTGGCAACGGCTG 337590 32 100.0 35 ................................ CTGCCCCTGTGGTGATGGTGTGTATCGTACTGCCC 337523 32 100.0 34 ................................ TCCAGGGATGAAGTTTTCAAAGGTGGAATTCCGT 337457 32 100.0 35 ................................ TACTGCTAGTCTTTGTGTTTCTTCTAGTTTTTCAA 337390 32 96.9 34 ..............A................. GTATTCTCCTTTTGCTATCATAGATAGTGAAAAA 337324 32 100.0 33 ................................ CTTTATACGCTTTCTTCATTTCAAATACTGCAC 337259 32 100.0 34 ................................ CGCATATGGAGATAACCCTAATTGTCGCGCTTGT 337193 32 100.0 34 ................................ AGTAAAGTATGGGGCAAATGCTAATCGGAAAGCC 337127 32 100.0 33 ................................ TCCCATGATTGAACCTCCTAGTAATTATCCCAC 337062 32 100.0 34 ................................ TTGATGATCGCAGTACTCCTCGCCTAGAGGATAA 336996 32 100.0 35 ................................ AATCATCTGAGCGCCAATGGATGCTTACTGGTGAA 336929 32 100.0 36 ................................ CCATTTGCCGAGTACGACATTGCGATGGGTATTGAC 336861 32 100.0 36 ................................ TATCAAAGATTTGCAAACAACAATGGCATTGTAGAC 336793 32 100.0 34 ................................ CGCCAATGGTTGACTCAAACGTGATTTTGTCGAC 336727 32 100.0 36 ................................ TACGTAGACCGAGTCACTATCGACTCCCTGCTCCAC 336659 32 100.0 33 ................................ CCAATTACCCGTGAATACTCCTGCAATAAAATC 336594 32 100.0 34 ................................ CTTTCGCCGAATATGACCTCGACAAGATTCCAAA 336528 32 100.0 34 ................................ GCATTCGATACAGAAAAGGTGTAAAGCGATCTAT 336462 32 100.0 36 ................................ AAAACAAGCGTTGCGGCTAACCTAGCCATAGAAACC 336394 32 100.0 36 ................................ TCCCGGTGCGGTGGTGTCTGGAATTGGTATGGTTAC 336326 32 100.0 34 ................................ CAATCCGAGTAATGTATCAAGAGATGTATTAAAG 336260 32 100.0 35 ................................ TATCAATGTATTTTGTTCCATCCACAGTGGCCAGC 336193 32 100.0 35 ................................ TCTCAGATGGGGTAATTATGTATGCGGTAGTTGAG 336126 32 100.0 34 ................................ CAGAAGGAACCAATACATGCGATCTCTAGTAGAT 336060 32 100.0 35 ................................ TGCTAGTAAGTCATCTACACAGAGGACATCCCCTT 335993 32 93.8 0 ..............A...........C..... | ========== ====== ====== ====== ================================ ==================================== ================== 94 32 99.9 34 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : CTTGATGAGTATCCACCATTAATGTGGAAGTAGGTGTAACATGTGCTGGTATTAATTACGTATGATGTAAGTACTGTAAGTGGTGCAGGGCAGAAAAGATTACGTAGGGTAGCAAAAGTATGTCAAAACTACGGACAACGTGTTCAAAACTCTGTATTTGAATGTATAGTAGATGCAACTCAATTTGCGACACTAAAAATTGAACTGGCAAATATTATTGATGAAGAGCAGGATAGCCTTAGGTTTTATCAGTTGGGTAATAATTATAAGACTAAAGTAGAACATCTTGGTGTGAAAGAATCGATCGATTTAGAAGGTCCCTTAATTCTTTAGTGCGAATGTATAGTGCGCATAAAAAGCATGACACATTCGCACCAAAATTAGCACATGATATCACCAAAAATGTAAAATAATGTTATTGGATCTTTATTCTTATAAAGGAAATGATGTTTTTGGGTTAAAAAAATAAAGCTTTCAGATGATTTTTGCCTAAAATCGCT # Right flank : GGTGCTATTGATTCCAAAGGGGATATCCCTTGTTGTTTAACACTACGATTTAGAAGTAACTTTACTTTTTTTGAAATGCGAGACTAAGTAAAACTATCTATAACAGAATAACTTCAATAAAATAGGAGCCATGTAAGTAGGATGGCTTCTTTTACTCATTAGTTTAAAAAATGTTTGTTTATCTGTCCATTAATTAATACGCATATTTGAGAGGTTCTCTATTCTCCCCGTTTCCGCCGTTCGGTAATGGTCTCACCGCCGATTCCCCAGTTATCCGTTTCCACTTCATCGATGACCACAACGGTGGTTTTGGGGTTCTTTCCTAAGACGTTTTGCAGAAGCTCCGTGGCTCCTTTGATTAAGGCTTGTTTCTGTTCTGTTGTCACTACTTTGCCTTGCTCTTTTGTGATTTTAATATTAATATACGGCATCTTCAGGATCATCCTTCCTTAGATTGATTTGGTGAGTTAATTCGAGATGATGCAGCTGTCTCTGGCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //