Array 1 96974-98160 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKV01000006.1 Salmonella enterica strain BCW_1982 NODE_6_length_332411_cov_3.92451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96974 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 97035 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 97096 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 97157 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 97218 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 97279 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 97340 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 97401 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 97462 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 97523 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 97584 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 97645 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 97706 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 97767 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 97828 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 97889 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 97950 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 98011 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 98072 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 98133 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114331-115888 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKV01000006.1 Salmonella enterica strain BCW_1982 NODE_6_length_332411_cov_3.92451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114331 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 114392 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 114453 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 114514 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 114575 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 114636 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 114697 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 114758 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 114819 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 114880 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 114941 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 115002 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 115064 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 115126 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 115187 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 115248 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 115309 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 115370 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 115431 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 115492 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 115553 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 115614 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 115676 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 115737 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 115798 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 115859 29 93.1 0 A..............A............. | A [115885] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //