Array 1 33108-34172 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVC01000025.1 Aquaspirillum serpens DSM 68 G465DRAFT_scaffold00025.25_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33108 28 100.0 33 ............................ TTATGCGCATACTTATCAAAGCACATTTGTTAT 33169 28 100.0 33 ............................ TCATCTCGATACATATCGCTTGCAAGCGCTACA 33230 28 100.0 33 ............................ TCGCTGCAGCAGATTGTGCGCTTGATAAATCAG 33291 28 100.0 33 ............................ CAAAATAATCATTGGACAGCGCACTATCATAAG 33352 28 100.0 33 ............................ CATCAGCACGATGCTGCTTAATAATTGCAGCAA 33413 28 100.0 33 ............................ TCATCAAACTCAACATAATCTTTGATTGCATTG 33474 28 100.0 33 ............................ CGATAAACCGACTTTCTTCTTAACCATCTCGTT 33535 28 100.0 33 ............................ TTTGCGACAAATAAGCCGGAAACTGCTCGAAAG 33596 28 100.0 33 ............................ CTTAGGCATAGTCCAATACTGACGGCGGTAAAT 33657 28 100.0 33 ............................ TGCCATATAACCCGCCTCAGCCGCCTTAAAAAG 33718 28 100.0 33 ............................ CTCGAAGCTTTGGAAAAAGGCGAGTCTACTTTG 33779 28 100.0 33 ............................ TGCTGCAAGAAAGCAGAAAGAGGCAGTGATGCG 33840 28 100.0 33 ............................ TGCTGCAAGAAAGCAGAAAGAGGCAGTGATGCG 33901 28 100.0 33 ............................ TGCAGCAATTCCGCGATGCCGGCGGCGATGTAA 33962 28 100.0 33 ............................ TCGCAGCAACTGTTGCTGTTCCTCTGCGCTTAA 34023 28 100.0 33 ............................ CTCGAAAACGGAGTTTTGAACGAGAAAGGTTTG 34084 28 100.0 33 ............................ CGAAGTTTCGCAAGTTATTTTTAATCTGGGTGG 34145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TATATAAAGAAAATTTATGTATTGATCTGGCCTTTTCTCTCACTAAAGACATGGCTGGTCGTTACAACAAGCACATTGTTTCTGCTCAATTTAGAAAACGTGCACTGGACATGGATTTGTTGGATACAGCAGTGTCCGATATAAATTCACTAATGCGAGGAAAACATGGTCATCGTCATCGCAAATGAACTGCCTCCTGCTGTTCGTGGACGTATGAAATTATGGTTCATAGAACCACGGGCAAATGTTTTTGTATCTGGTATTAAAGATTCTGTTGCACAAACCGTGGTTGACTATCTGGTAAAACATTGCCCCGTTGAATCTGGTGTAATGATCTATGTTTCGCAGCCTAAACCACCTGGATATCGTATAGTCACGATTGGAACACCAAGAAAGCCGCAGACCACAATTGATGGATTGCAATTGATAGTAGAAACCCTAAATTCCTCAGAACTACAATAGCTAGTATAATAGTAGTATGCTCAGCACAATCTGTTGCT # Right flank : CATTTCGACCCACCGGCAGGCCGGTGATGTGTTGTCTTCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27546-27385 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVC01000036.1 Aquaspirillum serpens DSM 68 G465DRAFT_scaffold00036.36_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27545 28 87.5 35 ----............................ GCTTGCGTCGTGATGCGTGACTTCACTTCCTCAGT 27482 32 100.0 34 ................................ ATTGCCCGTTCCCTGCCCGCTCATTGCCCGTCCC 27416 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 35 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : GGCAAAAAGTAGGTTTCCGACTCTTTGTGCCAAATGTTTTGCCATATTATAAAAGAATTAAGTTTCATCCCTATTAGTACGTAGAAAAACCCGCCAAAGCGGGTTTTTAATGGGTAATTCTTAACTTACTGATACTTCAAGATTTTTTCCAAGTACATTTAATGCCTTTTCAATGGTGTCAATTTTTGATGCGTGTTTAAGATTAGTTAACCTTTGTACATCTTGGGGCCGTGTATTGAGTCTTCGTGCAACTTCTGATGGCCCGACTTTTTGTTCCAACATTGCGTTAAGAAGTAACACTTTTGCTGAAACACTTGCCGGTAAGCTGACCAATTTTTCATTGGCCGTCATCTCTGATGGCATTGGTACTATGCGCTTGCTCTCAAAGTAAAAATCCATTGATGAGAGCAATACATCTTCTGCCATTAACATGGCTTCTTCTTCTGTATCCCCTTGCGTAATCGCTTCTGGAATATCTCTAAAAGAGACAACATAGCCAC # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19258-21954 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVC01000049.1 Aquaspirillum serpens DSM 68 G465DRAFT_scaffold00049.49_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 19258 32 100.0 34 ................................ AACATGGGCAATCCGACAGTAACCTACGCTTATC 19324 32 100.0 34 ................................ ACATCTCTCAAAGTATCGACAGACACGCCATCAA 19390 32 100.0 35 ................................ ATTTTTAATTAAATTACGCTGGTCAATATCAGCAA 19457 32 100.0 29 ................................ TTCAATCAGTGACTTAATTTTTAGCGCAT 19518 32 100.0 33 ................................ ATTTTCTCACCTTTTCTCAAAACTCGCTAAAAG 19583 32 100.0 34 ................................ TTGTCGCACCATTTATTGAGTATCCGCGCCTTAA 19649 32 100.0 35 ................................ ATGTCGTAAATTAAAAGACGCGATTAACTTGTCTC 19716 32 100.0 36 ................................ CATGATGACCGCGTGACCATCGGTGTTTGTGACAGA 19784 32 100.0 35 ................................ TACATTCACCTATCCGAGTCATTGATGAAGCCTAT 19851 32 100.0 35 ................................ GACACCAACAACATCAATTGCATTTGGTCCGTATG 19918 32 100.0 35 ................................ TGCTCCAGCGGCTCCAACAACAGACACAGATTCCC 19985 32 100.0 36 ................................ AACCTGTCTAACGATGGTCTATTGTGGGCCGTTATC 20053 32 100.0 36 ................................ TTGCCCTCGCCCACATCAACGCGAACTGGACGCCCA 20121 32 100.0 34 ................................ TAATCCTAGCTCTCAACCCTGATTCGCTAATACC 20187 32 100.0 34 ................................ ATCCATGGCCGGTCAACGCTTTTTCTGACGTCTG 20253 32 100.0 35 ................................ ACCCGTTTCGGTGGGCTTGATGTGATCAATCAACT 20320 32 100.0 34 ................................ TGCATTTCGACTTTGAACGAGTGGTACTCTTGCG 20386 32 100.0 35 ................................ ATCGCGGACGTTTTCGAGAGTGCGCGCGTCAAGAT 20453 32 100.0 34 ................................ TCCGATTTGGCTTGTTGGCTCGTCTGCTAATCAG 20519 32 100.0 36 ................................ CCGTCCCCGTGCGCGGTGTGATGAGTTGCGCGCCCA 20587 32 100.0 35 ................................ TTAAACAGCTTTTCAGCTTCGTTGGTTGGGTTAAG 20654 32 100.0 35 ................................ TACGTTACCGCCTTGTGCCGTGGTGTACGTCCACG 20721 32 100.0 34 ................................ TGCCAATGCCTGACGGCCCGTGAATCATAATCAG 20787 32 100.0 33 ................................ ATCACGGTTGTTGATAAAAGCGCGAACAACCGC 20852 32 100.0 35 ................................ GACATGCCGAACATCAATAGGAAACCCGTTAACCG 20919 32 100.0 35 ................................ GTCTTTGGTGGTGGCTGAGCATTTTGGCAAGCGGC 20986 32 100.0 34 ................................ AGGACGATGTAACCCGATGTGGATTTATTCGAAC 21052 32 100.0 34 ................................ TATTTCACGCTGACGGTTAGCGTCTTGTTTTTGC 21118 32 100.0 35 ................................ TTGCAATCGATCATTCAAGCAATGCAGCAATTCCG 21185 32 100.0 33 ................................ TTGCCACGAGAGGGGGCGATACTCAATGTGCCC 21250 32 100.0 37 ................................ ATCTACGGGCGTGTCGCGAATTACACCGCCGGCAACG 21319 32 100.0 34 ................................ TCTGAGCTATCTGCTGCGAGAGTTTCGCTAGATT 21385 32 100.0 39 ................................ GTTGCGATTAGGCACAAAAAAACCGCCACGGCGGTGGCG 21456 32 100.0 37 ................................ CCCAACCAGCTGCCAGCGGTGGCGGGGGAGAAAGAGG 21525 32 100.0 35 ................................ GAGCAATTTCCATGAATCGGCGTACTCGATAATCT 21592 32 100.0 33 ................................ TTTAGGTAACTTTTTAACTTTTGCATGCCCTGT 21657 32 100.0 35 ................................ AACCTCCGGAAGATGTCGAAAATCAAACCAGGTCA 21724 32 100.0 35 ................................ GCCAGCAAGGCGAATGCTGCGAGTGGCCGCAGGCA 21791 32 100.0 35 ................................ GGTGCGACTTGTTGCCCATCGTAGATGCGCCCCCA 21858 32 100.0 33 ................................ ACACCGAAGATACACCGTCTTTCACGGTAACCC 21923 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 41 32 100.0 35 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CTACCCACCTTTCATTTGGAAGTGAGCGCTGCCCATGATGGTTTTAGTGAGTTATGACGTGAGTACCGAAGGCGACGGCGCCCGCCGCCTACGCCGTGTTGCCCGTGCTTGTCTCGATTATGGCCAACGTGCCCAATATTCAGTGTTCGAGATCGAGGTTGATCCGGCGCAGTGGGCGATGCTCAAAAATCGGCTGTGTGGGCTGATCGACCCAGAAGTGGACAGTTTGCGTTTCTATTATTTGGGCAAAAATTGGCAAGATCGTGTTGAGCATGTTGGTGCTAAACCTGTGCTTGATCTGAATGGGCCACTGATTCTTTAATTTGCGAACCGTAAGTGACCGGATAAATCCTGAGTGATTCGCAGATTGATAATGCATTGAATTTTAATGCTTATTTTTTTAGGTAGAGGATGGGGAGGAGAAATTAACTATTTGTGTAAAACATGTTCGCAAAAACACATCTCTTTTATTTTTGGAATGAATACGTTATAAGCGAACA # Right flank : TCAAGCAAGTGCGGCTTGAGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8889-11319 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVC01000072.1 Aquaspirillum serpens DSM 68 G465DRAFT_scaffold00072.72_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8889 28 100.0 32 ............................ AAGAGGCACTGGCAAAGACCTCCGACGCTGCA 8949 28 100.0 32 ............................ ATTACTAAAGCGCGAATAAAATAATTTTTTGT 9009 28 100.0 32 ............................ AGTCAATACAAGAGAGATATATCAATACAATA 9069 28 100.0 32 ............................ AAACGCTTGCGTTTGAGCATGAAAATTGTACC 9129 28 100.0 32 ............................ TTGTCGACGTTCCGGCAGATGTAAAAAGCATT 9189 28 100.0 32 ............................ TTTATCTTTTAGCGTCTTGACACGCTTGCAAG 9249 28 100.0 32 ............................ ATAAAGGAAGCAAAGCAATGAAAAACCAAAAA 9309 28 100.0 32 ............................ ATGTTGCGCGGCAATCATGGCGACTACTCAAA 9369 28 100.0 32 ............................ GGTGCAACAAAATCAGATTGTCAAGACTGGAT 9429 28 100.0 32 ............................ AGTATCTACCGGCTTTATCTTGCGATAACTTA 9489 28 100.0 32 ............................ ACAAGCCGGCCTAGTGCCGGCTTTTTTTTTTC 9549 28 100.0 32 ............................ TTGTTTCTGCATTGTATGTCATGCTTTCCAGC 9609 28 100.0 32 ............................ TTCGCTCGATAGGTTTCTTAAGTCCCCTTGAG 9669 28 100.0 32 ............................ ATTGGCTGCAACAAGCGCCATCTGCATTTTTG 9729 28 100.0 32 ............................ AAGCGAAAACCGAAACCCAGCAAGAAACCATC 9789 28 100.0 33 ............................ CTCAAGCCGCACCTGTTTGAGAATTGACGATTC 9850 28 100.0 32 ............................ TTTACCCGTCAGGCTTACCGGCTTGGCTATCA 9910 28 100.0 32 ............................ TGACACTGATGCAGTGCAGGCCGAAGCGAAAA 9970 28 100.0 32 ............................ TAGTGGTGAACGCTGGGGCCAACCGCCCGTTC 10030 28 100.0 32 ............................ CGATGTCGCCGGCTGGTCGAATATCGAATTGA 10090 28 100.0 32 ............................ ATCAACAGTAAATAGACTTTCTGCCCACGGGA 10150 28 100.0 32 ............................ ATCAAGCCCAACACAAAACGACCTGATATTGC 10210 28 100.0 32 ............................ ACTTGCTGATAGCCATCTTGCTAACACCCATC 10270 28 100.0 32 ............................ GACAGCCATTCCGCTAGACGGGTTGTAACTGG 10330 28 100.0 33 ............................ CTCATCACTACCATCAGTCTGATGCCAGATTGC 10391 28 100.0 32 ............................ GAATGCACCAACACATTGCGAGCAACACCAGA 10451 28 100.0 32 ............................ ATTTGGCCTTTTCTGCTTTATCGTATTTTGTC 10511 28 100.0 32 ............................ GAAACCGCCGCCAGCATTACAAAATACCTAGG 10571 28 100.0 32 ............................ CGATGGCTTTCAAATCACTCTCAACCGGCGAC 10631 28 100.0 33 ............................ CGCAACCGAAGGCACGCCCTCTACCAATCCCGT 10692 28 100.0 32 ............................ AAAAGGCTGCAATACATCACTAAAAGATACCA 10752 28 100.0 32 ............................ ACCACCTCCGATCAGTTTCCTGAAGCGGTAAT 10812 28 100.0 32 ............................ AAGCGGCTTCAGTAACATAGCTGGTAACACCG 10872 28 100.0 32 ............................ AAGCCATTAACACCGCCCAATCTTTCGAAAGC 10932 28 100.0 32 ............................ ATATCGAGCCATAGGGCACATTTTGGCGTGTT 10992 28 100.0 32 ............................ CGCGTTATCACCCAAGAGTCTTAAAGCAGTGG 11052 28 100.0 32 ............................ AGTCGGATGTGCCGTTAATTGTCCCTGTATAT 11112 28 100.0 32 ............................ GGTTACAGGTTCGGTTACAGGTTAGAACACTT 11172 28 100.0 32 ............................ GGTGGCCGCTGGCAATTGGGGCAGCGCTGCGA 11232 28 100.0 32 ............................ AAACGGGAGTGCTCCACGCACCAGAGAACGCG 11292 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 41 28 100.0 32 CCGAACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTCTGAAGAAAAATTGTTGGCATTGATGGCCAGTGATTGGTTGGCGGGAATGCGCGACCATTGTCAATTGAGTCAAATCTTAGCTGTTCCTGCTGGTGTTCAATATCGGGTGGTTCGACGGGTGCAATCGAAAAGCAACCCCGAACGGCTACGCCGGCGAGCCATTGCCCGAGGTGCTGATCCTTCTGAGGTGGCAAACAAAATCACCGAGGGTAAAAAGCTGACATTGCCTTCAGTTGAAGCGCGAAGCCGCACCAGTGGCAAAACGTTTTTTTTGTTTATTGAACATGGACCTTTGCAAGATCAGCCCATTGAAGGGGAATTTAGCTGTTATGGGCTGAGTACCACAGCAACAATACCTTGGTTCTAACCCTTTTTTTCGACCAAAAAATCCCCTCTTTTAAATCAATGGGTTACAAAAGGGGGGATAAAAAAGGGTTTTTTAGAGAATAGACAAAAAGTTCTTTAAAAATTAGAATGATATTTGCTTTTCTATCTA # Right flank : AAACAAGCCCAAGACGATTACGCGGACTATCTCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVC01000098.1 Aquaspirillum serpens DSM 68 G465DRAFT_scaffold00098.98_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 ............................ CTCGAAAACGGAGTTTTGAACGAGAAAGGTTTG 64 28 100.0 33 ............................ CGAAGTTTCGCAAGTTATTTTTAATCTGGGTGG 125 28 100.0 33 ............................ CATTTCGACCCACCGGCAGGCCGGTGATGTGTT 186 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : AAG # Right flank : TCTTGACCGCGCCCATACTCCAAAAGCATCTCCGCTTGTGTGACTACCTTGATTGCGAGCGTCAGGTATATGTTAGTTATTAGGGATTGGTGGCCAATAACAGTTTTTCTTTCTCGCCATAAAAAGTATCAATGTGTGAGATGTTATAGCGATGTTGCCGACTGTAATGGCGTACCCATGTCATTGCGTGGTGAAAAGCACCTTCTATGCTGTCAAAAACCTGATGAAACGACACGATAGAGGCAAACGGCGGGGTGAATTCAGAATCGTAGACCAACACTTCCGCGCTGCAATGTGGTGTGGTGCGGCAGCCAGTGACGCCAAAGCTTTGCACGCGAATTTTGAACAACACTTCTCGGTCGGTATGGATATCAATTTCTTTTGAATAGAACATTTTTTGCCCCCGATTGCCTAGATAACTTCCATAAATCTATTTTATATGTAAAAAATCACAAAAACACCGTGTTTCGTTTCTTTCTAGGCTTTGTTTGATGTAGGAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //