Array 1 1619638-1616556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031229.1 Ornithinimicrobium avium strain AMA3305 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1619637 37 100.0 35 ..................................... GTCTCGCAGAGCTCCATCGGGCCGTTGAGGTCGAC 1619565 37 100.0 35 ..................................... GCTCCGAGGTCGTCGGCTCCGGCTCCGAGGTCGTC 1619493 37 100.0 40 ..................................... GGGGCAGTCGAGCTCCCCCGCCGTGTAGACATGAGTGCCG 1619416 37 100.0 34 ..................................... GCCATCCACACCGGGTCACACCACGACTGGTCGT 1619345 37 100.0 34 ..................................... GCCACTCGGGGCAGCCATCAGCGATGACGAGGTT 1619274 37 100.0 34 ..................................... CGCCGGGCGAGGCGGCACACCCGCTCGTCCTCGC 1619203 37 100.0 33 ..................................... CAGCGTCGGGTGCCGGAGTGACCTGGACGTACT 1619133 37 100.0 44 ..................................... GAGGCCGCTGAGCGTCTCGAGCTGCTCGTAGAGCTTGCGGCCGA 1619052 37 100.0 34 ..................................... TCGGCGGGGTCGTAGCCGTCCCAGTCGCGCTCGG 1618981 37 100.0 31 ..................................... AGGCCGAGACCGACCTTGGCGCTGATACTCA 1618913 37 100.0 39 ..................................... CGCCGAGCCGCGATGGGTGGTCTGCCGGGATTGTGCGAG 1618837 37 100.0 38 ..................................... CGATGTGGGCGAAGCCCTCGTCGTCGAGCACCATGTGG 1618762 37 100.0 38 ..................................... CGTCGAGCCCATCATGAGGAGCGGCAGTAGGAGCAGGA 1618687 37 100.0 36 ..................................... GAAGTCGTCCTTGTTGAGGTTGGTCAACTTCTGCGA 1618614 37 100.0 35 ..................................... AAGAACAAGGCGCGGGCTCCCCGCGCAGACAAGTA 1618542 37 100.0 37 ..................................... GCGACGAGGGTGGTGGCGACCGTCTGCGCGGTCCGGG 1618468 37 100.0 33 ..................................... CAGCCTCGAGGAACTTGTGGCCGAACTGGCAGA 1618398 37 100.0 32 ..................................... TTGCACCAGTAGCCGGCCTGCTGGAGGGTCAT 1618329 37 100.0 17 ..................................... CAGGTGCGGCAGCCCCG Deletion [1618276] 1618275 37 97.3 37 ................................A.... GCATCGGCCCGACCAGCTGGATGTGGATGTAGCTGCC 1618201 37 97.3 37 ................................A.... GGTGCAGTTGATGTTTTACCTCTCTGCGGCTGGTGAA 1618127 37 100.0 41 ..................................... GTAGATTAGGATCCAGCTGCTGAGCGGTAGCTCATCGTTGA 1618049 37 100.0 38 ..................................... GTCGGTGATCAGCACCTGTTCCTCGACCTCGCCGGTGA 1617974 37 100.0 38 ..................................... GATTAGCTGCTAGTGTTGCGCAGTGCACCATCTCACGC 1617899 37 100.0 35 ..................................... GCCTCGCCCAGCCCGAACGCCGTGCCCTTCACCGA 1617827 37 100.0 34 ..................................... AACATCGGAGCCGAAGCTTCCGACCCTGCAGCGC 1617756 37 100.0 39 ..................................... GGAGGAGGCGGCGGCGTGTAGACCGGGGGCGGCGAGCTT 1617680 37 100.0 32 ..................................... ATCTCCACGTCCCGGCCACCGACCATCACCTG 1617611 37 100.0 37 ..................................... GGAACCACTGCCCGGGATCGGTCAGGCTGAGGGTGAT 1617537 37 100.0 38 ..................................... TCCCCAGGCGGACTAGTCGTCTCCTCCACAGGGGTCGA 1617462 37 100.0 35 ..................................... AGGTTGTCGACGACGGGCGAGTTGTTGACCGTGAT 1617390 37 100.0 35 ..................................... AAGCCATCGCCAGCGGTACGGACTGCTCGCCGACG 1617318 37 97.3 37 ....................................G AACAGGCAGCCTCCGTCGATCAGCGTCTGCAGATCAC 1617244 37 100.0 35 ..................................... AGTAGGGACAGAAGTGTTGACTTAGCCGCAGACGG 1617172 37 100.0 36 ..................................... GAGGTCGCCGTCGCGCGAGTAGTCAAACTCGCGGAC 1617099 37 100.0 39 ..................................... GGAGGAGGCGGCGGCGTGTAGAGCGGGGGCGGCGAGCTT 1617023 37 100.0 37 ..................................... GATTTCGCCGCTCTTGATGACTGCGAGGACGGTCCTG 1616949 37 100.0 37 ..................................... AGCTGCCCTTTCCGCCATGAGGACTCCTGCTGGATGG 1616875 37 100.0 32 ..................................... GTGGCGCCGTAGCGCCTCCTGGACTGAACGGT 1616806 37 100.0 35 ..................................... TCAGCCTCAGGCGGACAGCACGTCGAGCGCCTTCT 1616734 37 100.0 33 ..................................... GGGATGACGGGAATCGAACCCGCGATCTCAGGT 1616664 37 94.6 34 ..........G....................G..... CATCTTCTTGGCTGCGTTGATCGCCTGGTCCTTG 1616593 37 81.1 0 .............................TGCCG.GG | T [1616559] ========== ====== ====== ====== ===================================== ============================================ ================== 43 37 99.2 36 GTCAGGAAGCATCCGCCATCACAAGGCGAATAGAAAC # Left flank : CGACTCGTCCAAGACCTGGACCGGGATCTCCTGGCGATGATCGTCGTGGCCGCCTACGATGTCCGAGCAGACGAGCGACGAAGCCGCATCGCTGCCACCCTGCAAGCATGGGGCGACCGGATACAGAAGTCAGTCTTCGTGCTCGACATCTCGAGCGAGGACCTGGATGAGTTGTGCAGCCGCATCGGCGCCGTGATGGACCCGGACGAGGACTCCTTCTACGTCTTCACGCAGTGTGGCACCTGCTGGTCCAGCACCCGGTGCATCGGACAGGCGAACAAGCCAGAACAGACCCTGTACTGGCTCGCTCTATGAGCACCAGGGAGTCCCGATCCTGGGTGGGCGCACCGCCAAGCCTCTCACCCGCGAAGTGTACAAGCCCATGACCAGGCCTGATGCCGTTCAGGCTCCAGGTGCTGCCCCCGTCCCCGCTCAACAGCGACCCAACTGTGCAGAACCTCGACGAACACGCTGGTCAGAGGGGTCTCATCTAGGGTAGG # Right flank : CGGCAACGGCCGAAGAAGATCCTGTCACCATCGGCGAAGTATGAGATCTGGCTGCGGCTGGTCCGGGTCGATCGGGCGAGCATCAGCCCGCACCCGGTTCACGTTGTCCCCGAAGCACCGGATCGAGCCGGTCCACCCGACCCGCTCGGCGAGCACCGTAGCGGGCATGTCCGGGGTCTCCGCCAGCAACGCCCGCACCTGAGCCTCGAACGGCGTGAACGACGTCGGCCCGCTCTTGCGGACGTACCGCGGCGGCCCCTCGGAGTTGGCGGCCTTGATGACCGTGGTCCTCGAGATGCCCAGCTGTCGGGCGATCGCCGCCTTCGGCACACCGTCCCGAGCCAGCCTCCTGATCAGCGCCCAGTCCTCCATAGTGATCACTCTCCAATCGTTGTTGGGGTGTCCACTTTTCGAGCGCCGTGACCGTCCAGTTCTCAAGCGCCGCTGACAGCGTGCAGGGTCTGTGCGTCACGAGCAATGATCAGAACCTGGTGTGCCAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCATCCGCCATCACAAGGCGAATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //