Array 1 1253682-1252910 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKJ01000002.1 Bifidobacterium adolescentis strain LMG 10733 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1253681 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 1253614 33 100.0 33 ................................. CACAAGTCTCGCCTATAACTTAGGACACTAGAG 1253548 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 1253481 33 100.0 35 ................................. AATAATAGTTTCGCCATTTGCCGACGCTCTCCGGT 1253413 33 97.0 34 ...................T............. GGGTTGACGTACGTGGCGGTGCCCGTCACGGTAA 1253346 33 97.0 33 ...A............................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 1253280 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 1253213 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 1253145 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 1253077 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 1253009 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 1252942 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= =================================== ================== 12 33 98.5 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TA # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 663-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKJ01000003.1 Bifidobacterium adolescentis strain LMG 10733 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 662 33 100.0 34 ................................. ATGAAGCCACCCCCTCGGCTTGGGGAGCGTCCAG 595 33 100.0 36 ................................. CTCACGAGATCGCGCAACGTCTCGATGATTTGGAAG 526 33 100.0 37 ................................. AAAAAGGAAAATCTGTATTGGGGCAGCACCGTACAGG 456 33 100.0 35 ................................. GGTACAAACGGTTACATCCCTTAGTTATCCGATAG 388 33 100.0 35 ................................. GCTTTCGTATTGGCGACATCGTTGGCTGTGCGGTG 320 33 100.0 34 ................................. TACAAGGTGCATCTTGATGCGGCACCAACCGACG 253 33 100.0 35 ................................. TCCATAAGTGACGTCAGCCGAATCATGCCAGTCCG 185 33 100.0 33 ................................. CGAGACTCCATGGGACGATGGGCGGAGTACATG 119 33 100.0 35 ................................. CCCATTGGTCGCGGAGCCATGTGTTGAGCCGTGGG 51 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 100.0 35 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACGG # Right flank : TTATGACACCTTGGAAGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //