Array 1 52625-54391 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKJ01000015.1 Affinibrenneria salicis strain L3-3HA Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52625 28 100.0 32 ............................ GGATAGCGGACCGGCGGCAGGGTGTCCCACAG 52685 28 100.0 32 ............................ AGAGGGCTACGACTACCAGCGTGACGATGAAG 52745 28 100.0 32 ............................ AGCGCAAAACGTCATCAAGGGGAACTTCACAC 52805 28 92.9 32 AA.......................... TTACCGCCAGTTACAATCAGCGGAGAAACCCT 52865 28 100.0 32 ............................ GGCCGGCAAGATACTGAACGATAAATTCCGGC 52925 28 100.0 32 ............................ CGATTTCGATCGTACGCCAGCGTCATTTCCAG 52985 28 100.0 32 ............................ GCACGAGAACGTAACAAGTTACCCGGAGGATT 53045 28 100.0 32 ............................ TTACCGCCAGTTACAATCAGCGGAGAAACCCT 53105 28 100.0 32 ............................ GGCCGGCAAGATACTGAACGATAAATTCCGGC 53165 28 100.0 32 ............................ CGATTTCGATCGTACGCCAGCGTCATTTCCAG 53225 28 100.0 32 ............................ GCACGAGAACGTAACAAGTTACCCGGAGGATT 53285 28 100.0 32 ............................ TATTCGGCATGGTGTATTTTGTGTATAGATGC 53345 28 100.0 32 ............................ TTCCTCCATGGCGGTTTTCAATGCGGCCGCAT 53405 28 100.0 32 ............................ GTGCTGGGGGTCGGTAGCCGAATCGAATGCAT 53465 28 100.0 32 ............................ AGAGATCCGGATATCAGTTTTAAAAACGAAAT 53525 28 100.0 32 ............................ AACTCATCACTGCTTGCCAGTTTTGCCGCAGA 53585 28 100.0 32 ............................ TGACGGAACTAAAAACCAAAACACAGGACTGG 53645 28 100.0 32 ............................ GTCAAAACCATCAAGCCATGCAGACTCAATGA 53705 28 100.0 32 ............................ AGCCACGTATCATCGCCGATCACAAACAGATC 53765 28 100.0 33 ............................ CGAGTGGATGGGCGGCACGCCGGGGCAGAACGG 53826 28 100.0 32 ............................ GCTCAGGTGTCGTTCAATGACATGCCGACGAC 53886 28 100.0 32 ............................ GCTGGCAGCAGTCATCCGGCATCGCCGACCCG 53946 28 100.0 32 ............................ TATCGAATTCTCCACCAGTCAGAATCTGACGG 54006 28 100.0 29 ............................ TCAATGAAATCATTTGATAGCGATTCATA 54063 28 100.0 32 ............................ TGCCGGAATGATGCCGATTGCCGGACATGAAC 54123 28 100.0 32 ............................ GGAAAAATTCCGCGTTGTGGGCGAAGACGGGA 54183 28 100.0 32 ............................ AGCGCCCAGAAACTGGCAATAAATAGCACTGT 54243 28 96.4 33 T........................... CACAATCATATGGTCCAGCACATTGATATCAAC 54304 28 100.0 32 ............................ AGTGATACCCCATGGCTTGTGTATCATCATCA 54364 28 92.9 0 .....................A.G.... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCTTCAACCGTTATGATGCCGGCAACCAAACATACTTTGCCGCGATGCGGGCAAAGTGCGTTGGCGTTCAACGCCCGCACCGCCCCGCGTGAATCCGCCGATGTTAGTGAACGCTTCGTGTTTCTCCTGAAACGGAGCTTCTCTTCTGTGCAGTGCGGACGAGTAACGCCTTGCGCTTGCAGTAAGTCTTTACTTACCCAGTCGGAGCCGAATTCCGGCTCTCGGCCACGGCGTCAGGTTCTGTTTCTGCTGCATATCTAATATCGTCGACTGACAGGCGGATTATGATGCCGGCATCGCGGGTGACGAACGATCAGACCTGTGATGCGAACATAAATAAAAAATCCCACCATCAGCCCGCGGGCGCTGACCCTTTTTTTTCAGCTATTTATAATTAATTGATTTTATGACTATTATCTTGTCTGGCAGACAAAAGGGTTTTTACGCCGTTAATCCTTTTTCTCTTTAACTATCAGGAATAAACCACTATTTTATAACG # Right flank : ACATATGGACAGCCAGGATAGCACGGCTCTGGCGAAAATATTCGGTTCGCGCCAGAGCCTGCGGAGCGCTTACACCATGTTTTTTAGCCGATAGAGCCAGTCCAGCGCCTGACGCGGCGTTAATGCGTCGGGATCGAGCGCTTCCAGCGCCTCTATGGCCGGAGAGGGTTCCTCGCTGGCGGGCAGCAGCGCGAGCTGCGAGCCGTCGACATGGCTGGCCGAGGTATTTGCGGACAGCGTTTCCAGCTCCCTCAGCTTTTGCCGGGCGCGCTTAATTACGTCGCGCGGTACGCCCGCCAGCGCGGCGACCGCCAACCCGTAGCTCTTGCTGGCCGCGCCGTCCTGCACGCTATGCATAAAGGCAATGGTATCGCCGTGCTCACGTGCGTCGAGATGGACGTTCACCACGCCTTCCATTTTTTCCGGCAGGTTGGTCAGTTCGAAATAGTGGGTGGCGAACAGCGTCATGGCTTTGATGCGGCTGGCCAGGTTTTCCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38817-37103 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKJ01000009.1 Affinibrenneria salicis strain L3-3HA Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38816 28 100.0 32 ............................ AAAACCCCGGAGTCGATTCGTTGGGGTTAACG 38756 28 100.0 33 ............................ GTTCCTCGATAACCTTATGTGCATAGGTCTCGT 38695 28 100.0 33 ............................ CACCTGACGGGCGATTCCGTGTACCTGGCAAAC 38634 28 100.0 32 ............................ AGCGGGTAGCCCATTCGATAGCTAGCCGTGAT 38574 28 100.0 32 ............................ ATCATAAAGCCGGCCACGATCGAATCGACGAT 38514 28 100.0 32 ............................ CAGCGCTGGTAAGTCATTCGTCAACAATAGCC 38454 28 100.0 32 ............................ TCGTCTAAAAATTATACGTAGCATGTCCATCC 38394 28 100.0 32 ............................ GGATAGAGGCGTATCAATCTTGATGATTTCTT 38334 28 100.0 32 ............................ TGCGTCGAACAGCAAAAACAAAAATGAGTGAG 38274 28 100.0 32 ............................ CATTTATATATATACACTCTCTCAGGCCAGTA 38214 28 100.0 32 ............................ TTGGGGAACTTGGGGAAGATAAATAGATATGT 38154 28 100.0 32 ............................ GTAGAGGTACCAACAGAACCAACACGACGCTC 38094 28 100.0 32 ............................ GTGTTCCGGCCAAAAAGCAAAATAGGGCTTTT 38034 28 100.0 32 ............................ TCCGCTGCTGATATGCTGCAACGGAGAAGTAC 37974 28 100.0 32 ............................ ATCAATAAATGCACCCTTTGATAAATCAAACC 37914 28 100.0 33 ............................ GATGGCGTGGTGGCCTCAGCTGTCGGTAACAGC 37853 28 100.0 32 ............................ CTGAAACGGCTTAGCCACAGCGGCGGCATGCA 37793 28 100.0 32 ............................ TCCGGCGTTAATAACGCCTCGACAACCTCACC 37733 28 100.0 33 ............................ CATAAGACTCATTCATGCGACGAATTGCTACCG 37672 28 100.0 32 ............................ TTGTGCGCGGGATTGGGCAAACTACCGTGTCG 37612 28 100.0 32 ............................ GCCTGAATTATCGCACGGCGGCGCCTGCTCTA 37552 28 100.0 32 ............................ GCACGATGCGAGGCTTGATTATAACACGATGT 37492 28 100.0 33 ............................ TACAACAGAAAGGGAATATTGTGTAAGGTTTCC 37431 28 100.0 32 ............................ AGTACTACATTCAGCCGCAGAATATGAGCGCT 37371 28 100.0 32 ............................ GGGAGAACGGCGGGAAAGAAACGGATTCAGTA 37311 28 100.0 32 ............................ GCGTTGGTGTTGCCGCTGAAATCATGACTGCG 37251 28 100.0 32 ............................ ACGCCAGGCACGCATCGCGCACGTCTCCGGCG 37191 28 96.4 32 ....................T....... GTTGACGACAGCCTCGATCTTGTCGAACTCCG 37131 27 78.6 0 ........T...G.-...C.T...C... | C,T [37106,37122] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCTGAACTCCAGGCCAGCGCCTGGTTGAAAGGGCTGCGCGACTATACGCAATCCAGCGATATTCAGTCGGTGCCAGCCGGAGTGAAATTTCGCCCGGTACGGCGTGTTCAGGTGAAAAGCAGTGCGATGCGCCTGCGTCGGCGTTCGGTTAATAAAGGCTGGCTGACCGAAAAACAGGCTGAAGAACGCATCCCTTTTAGCTGTGAACAGCGTACCGGTCTGCCGTTTCTGCAGTTAAAAAGTCTGTCATCCGGGCAGACATTCAGACTATTTATCGCGCAGGGGCCGGTTCAGAGTACGTCGGTTAACGGGACATTTAGCACATATGGATTGAGCGCCACCGCCACCGTACCGTGGTTTTAACCCTTTTTTTTGCGGCCAACCATAACGTATTGATTTTATAAGCAGTTGGCCGCCCCTTTAAAAAAAGGGTTTTTAGCTGGTTAAGGATGTTTTTCTTTAACAATAAGGAAGATGCCATTACTTTATAACG # Right flank : AACGCGTTAAGCAAAAAGGGCCATCCGGCCCTTGTTCACTATGTTAACGCCTTACTCCTGCGATGATTTTTCCGCTTTGCCCGCCATCATGGTCAGGAAGTCATAGCGGCGGCGCAGATCTTCTTCCGCTTGCTGGTACAGCAGCGCGCTCTGTTCCGGCAGTTGGGTGTTAAGGCGGCGGAAACGCTGCTCTTTGAGCAGGGTTTCGCTCAGGCTGCTGGACGGCGGACGGGAGTCCGTGACCAGCGCCGCTTTGCCTTCCTGCGTCCGGCGCGGATCGAAGCGATACAGCGGCCAGAAACCGGTGGCGGTGAGCTGGCGCATCTGTTCATGGCTGAAGGCCAGATCGTAGCCGTGCTCTTCGCACGGGCTGTAGGCGATAATCAGCGACGGACCCGGCCAGGCCTCCGCTTCCTGTATCGCTTTCACCGTCTGGTTCAGCTGTGCGCCCAGCGAAATCTGCGCCACGTAGACGTGGCCGTACATCATCACGTTGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47520-48335 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKJ01000009.1 Affinibrenneria salicis strain L3-3HA Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 47520 28 100.0 33 ............................ TGTCTCTGATTACCTCGTTGAATGCGGATCCTG 47581 28 100.0 32 ............................ CGCCTCGTTTCGCGTCCGACCCGCATCAACGC 47641 28 100.0 33 ............................ CATCAGAAAAGTCCTTAGTCCCCATATTCCCGT 47702 28 100.0 34 ............................ CCCACTGGCAACCTGTATTTAAACGTATGAGAGA 47764 28 100.0 32 ............................ TGCAGGTCGAATTCGATATCCCGGATGAAACG 47824 28 100.0 32 ............................ GGCAATACACACTGATCCAGTCCCGACACTGG 47884 28 100.0 32 ............................ AAACGGATCCGCGACTTATCAAAGCTGGCCCT 47944 28 100.0 33 ............................ TTTATGCTAATGGCCCGCGCGGAACGACCGATT 48005 28 100.0 32 ............................ ACGGATAAGGTCGGCGCAGGTCGAGTGGCAAT 48065 28 100.0 33 ............................ GTGTCGATGGAATGTATTATCCATTTTTCTAAT 48126 28 100.0 32 ............................ ATAGTGAATTGGCTCGTAGCTTAAATGCCTGA 48186 28 100.0 32 ............................ CAGTAACGACCATCCCAAGAGTGATCTCGGTT 48246 28 96.4 32 ...........C................ TAACCTCCCTGACGGGCGGTATGTGTAGTTTA 48306 28 92.9 0 .....................A..T... | T,T [48326,48331] ========== ====== ====== ====== ============================ ================================== ================== 14 28 99.2 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGGCGCGCTTAGAGTGCAGAATGGTTTTCATATCGGAAGGGCTAAAGGCATCATCCATAAAATCGATCTCCTGAATCGGGCAGCCGCCGCTGCAATCATCATTCCGGTGATTATTTGTAGCCGTTATTTTTCAGGTACCCGCCGCCTTACCGCAGCCGCAATCTGTTGAATATATCCAGCCATACTTCGCGCTGCGATGCGTTGGCTACGCCCGTTAACGCGTCAGCGTTAACGGGAGCATAGGTTAAAGGTAGCGTATCATCATACTTATACGCCATATATCAGGCTGGATAGAAAATTGCGATAGACGACCACAGAAAGCGAGACAGGCTCAGTCTCTACTTACTGGCGAAGATTGGTTCGGCGCGGCAACCCTTTTTTTAGCCTTATATATTTTCTTTTATTTATCAATAAATTAAATATAGCCAAATAAAAAGGGGTAAAACCGTTTTCCGGCAATTGTATTAACCAAACCAGACAGTTAGGATAAATAAGCAACG # Right flank : ATCAACCGGTTAAAGCCCTCCGCTCCGGTAAAAACCGGAGCGGGGAGTCCTCGCACAGCGATAGATGCGGGAAGTTAACGCCCGGCCAGCGCGTTATCCAGCGCGCCCACCAGCCAGTCGATGTCCTGCGGCTGAAATGCCAGCGGCGGGCGCAGTTTCAGCACGTTGCCGTGCGGCCCGGCCACCGAGGTCAGCACGCGTTGAGCGCGCAGTTTTTCAATTACGTCCAGCGCCAGCGTTTTGTCGGGCGTTTTCGCCGCGCGATCGCTGACCAGTTCAAGGCCGATAAACAGACCGGCGCCGCGCACGTCGCCGATGCTGTCGTGGCGCTGCATCAGCTGTTGCAGCTCCTGCAGCAGTTTACCGCCCACTTCGCGGCTGTGCTGCTGCAGCCGTTCTTCCCTAATCACCTTCAGCACGGCCTGGGCGGCCGCAATGGATACCGGGTTGCCGCCGAAGGTGTTGAAGTAGGGAATGCTGTCGCTGAACGCGGCCAGCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //