Array 1 107650-110021 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWQ01000005.1 Pasteurella multocida strain HND15 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107650 28 100.0 32 ............................ TCATCTATTGACTTCTGCCCGACCAACTTTAC 107710 28 100.0 32 ............................ AAAAGAGCCAGGCAAAAATCGCCTGGTTCTTT 107770 28 100.0 32 ............................ AAACTATCAAAATCCTCTGGAATAAGAGTTAT 107830 28 100.0 32 ............................ AAAACCAATTCCTAATTGTCCAGAACGTCCCT 107890 28 100.0 32 ............................ AAGCATCAAGAAAAACTCTGGATTCAGCCAAA 107950 28 100.0 32 ............................ ACTCTCATATTTATATGGTTGTTTTTTATTCT 108010 28 100.0 32 ............................ TGCGAATGGAATCAACACTTCATATCGCAGAG 108070 28 100.0 33 ............................ TAAACAAAGCACCTCCCATGAAAGCCATACTAT 108131 28 100.0 32 ............................ TTTAGTTACTCATCTAGTTACTCATCTAGTTA 108191 28 100.0 33 ............................ AAACGTGACTGATTCGAGTTCCAAAGCGACCTG 108252 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 108312 28 100.0 32 ............................ GGCGATGTTAAGTGGTAAACCATTCCGCAATC 108372 28 100.0 33 ............................ TAAAACATTATACAATTAAATTCATGAACACAA 108433 28 100.0 32 ............................ TTTAGAGGGCGTAGGTATCACTGAAATTAGAC 108493 28 100.0 32 ............................ TCTCTTTATGAGAGATTCTATGAGTGAATCTT 108553 28 100.0 32 ............................ ATTAGAGAATCTCCCTTTTTCCAAGCATCACC 108613 28 100.0 32 ............................ ACTTACGCTTAGAGAATACCGCCTATTCTTTA 108673 28 100.0 32 ............................ TTAATGCTATAATCGCCACATAAAATGCAAAA 108733 28 100.0 32 ............................ ACATTATAGCGGTGAGGATATGGCGGACTATA 108793 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 108853 28 100.0 32 ............................ TATCAGATACTGGCACAATTTCTTTCTCATAA 108913 28 100.0 32 ............................ AAAGCAACTTGTGAACGTCCGTTGTGTGTTGA 108973 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 109033 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 109093 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 109153 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 109213 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 109273 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 109333 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 109393 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 109453 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 109513 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 109573 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 109634 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 109694 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 109754 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 109814 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 109874 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 109934 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 109994 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15635-16202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWQ01000006.1 Pasteurella multocida strain HND15 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15635 28 100.0 32 ............................ AAGTAGCCTTTTAGTAGTCACTAGATTACTAG 15695 28 100.0 32 ............................ GCTTTTAGCGGACATGGCAAAGTAAGCGTTAC 15755 28 100.0 32 ............................ TTGACTGGAGGGGTCGTGTGTATGCAATTCCT 15815 28 100.0 32 ............................ AATCTCATTAAAGTATTAGACTTATTGAAATA 15875 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15935 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15995 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 16055 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16115 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16175 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //