Array 1 745478-749147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045670.1 Treponema pedis strain T3552B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 745478 36 97.2 30 A................................... CATTAAGCATAAGATTCAGCAATCCAATCG 745544 36 100.0 30 .................................... AGTAGTTCCCGAGTGCATATTGTAGATATT 745610 36 100.0 30 .................................... AAATTTCCTGAATGGATAACAGTAGCCGAT 745676 36 100.0 30 .................................... CAATAATTTTTCAAAGTGCCGAACGGTGCT 745742 36 100.0 30 .................................... GTCTTTTTGAAGTTCAAAAGCTACCCGCCA 745808 36 100.0 30 .................................... GAATTTAAAATAAATAATCACCCCGGCGAG 745874 36 100.0 30 .................................... AAGAAAAGTAATGCGGTAAGTACGTTTTAC 745940 36 100.0 30 .................................... GCATAGACTGTGTAATCATTTGACGTAAGG 746006 36 100.0 30 .................................... AATGTATCGCAACAAACGGTATCAAATACT 746072 36 100.0 30 .................................... GATTGATGACAGCTTCAAAGATGAGGAGCT 746138 36 100.0 30 .................................... AATACTTTCAGTATTTATCATCAATTACGG 746204 36 100.0 30 .................................... CTTTACACATATCTTAGTTAACAATCAATA 746270 36 100.0 32 .................................... AACCTAAAATAAATATACAATCCGAGACTCGG 746338 36 100.0 30 .................................... TGAAGTTCGACTGCTAACTGGTCAAGCTGA 746404 36 100.0 30 .................................... TCAAGCGGGCAATTGAAAGCGTTGCACAAT 746470 36 100.0 31 .................................... TTTCAATAAGTTTGCATAGCCGCAAACTGCA 746537 36 100.0 30 .................................... CGATTTATCATTGCTTTCGGCGCTTTAATG 746603 36 100.0 30 .................................... TTCAGCTTCCATTTTCCCGGTGCTATCTTG 746669 36 100.0 30 .................................... CGGAGTGTTTTTAAAATTGGACGGGCTAAC 746735 36 100.0 30 .................................... CAAAAAAGTAAACTATGACGGAGCGAAGCC 746801 36 100.0 30 .................................... AATACAAGACTTACGGATACAAATACAGTG 746867 36 100.0 30 .................................... AAATAATGAAATTTGATAAAGCAATAGTGT 746933 36 100.0 30 .................................... AAATGCCGGAATAAATTCGGCTTCGGAAAT 746999 36 100.0 30 .................................... TAACGCAGAAAATAAAAATTAAACAAACTG 747065 36 100.0 30 .................................... ATTTTCAAGGCGGCTTGTAAATGATTTGGG 747131 36 100.0 30 .................................... CGTGGAACACGGGAAGACGCACCGATGAAA 747197 36 100.0 30 .................................... TAAACAAAACTCTTGTATACTTAGGAGCTA 747263 36 100.0 30 .................................... ACGGCAATCCGTGAATATTACGGATTACCT 747329 36 100.0 30 .................................... AGCGGTAAGAATCCGATTAGATTACTCATA 747395 36 100.0 30 .................................... AACGCCGCCAAAATATCGTATCAAAATTAA 747461 36 100.0 30 .................................... CTTGATTTTTATCGCATAAAACGATACACT 747527 36 100.0 30 .................................... TGAGGTGGTACTGATATAGCCGGTAAGCCA 747593 36 100.0 30 .................................... TTTTTCTTTTATTTTGAGGGTTTGATTGGC 747659 36 100.0 31 .................................... TTCCATCTTCAGGATTATGCACTCTTGCATA 747726 36 100.0 30 .................................... GCACATTAAGTTAATACCGCCTATATATAA 747792 36 100.0 30 .................................... TTTCTCAGCTTTATCAGCCGTAATAGTTAC 747858 36 100.0 29 .................................... GTTGCTTTTTTTTGTCATCATCGTAAACT 747923 36 100.0 30 .................................... TGTGGCGCTGCTTGAACTATAGCCGTGATA 747989 36 100.0 30 .................................... TGAGGTGGTACTGATATAGCCGGTAAGCCA 748055 36 100.0 30 .................................... TTTTTCTTTTATTTTGAGGGTTTGATTGGC 748121 36 100.0 31 .................................... TTCCATCTTCAGGATTATGCACTCTTGCATA 748188 36 100.0 30 .................................... ATTAGCATACACGATATATGCTATTATTTA 748254 36 100.0 30 .................................... GTTGCAAGTTCTGAGCAAGCAATTGGTTAT 748320 36 100.0 30 .................................... AGTATTCCTGAACATTAGGGTCAGCCTTTT 748386 36 100.0 31 .................................... TTGGTCTTGCCTAATGACACTTCCGAAGTCG 748453 36 100.0 29 .................................... CTACTCCGTATCCATCAGATATAACAGTA 748518 36 100.0 30 .................................... ACTAGTCAGATTCATTTCTGCTGTGCCACA 748584 36 100.0 30 .................................... ACATCTTGCTGAAATACCACACGATATAGT 748650 36 100.0 30 .................................... TAGCCGTAAAAATAGAGGCGGCTATTACGG 748716 36 100.0 31 .................................... TAGTTTTATAAAAATGATGACTACCGACACA 748783 36 100.0 30 .................................... TAGATGCAATGCAGCAAGCTGCGGGAGCAA 748849 36 100.0 30 .................................... TGCTCATCATTTCACCTTTAGGCAATTCTG 748915 36 100.0 30 .................................... CTCTTACCAAGTTTAGGTATTTGAGTATCA 748981 36 100.0 30 .................................... GTAAGAGTGACGAATAATGCGCGGTGCTTC 749047 36 100.0 29 .................................... GTTTATCCCCTCAACTCGCCCCGCAGGGC 749112 36 97.2 0 T................................... | ========== ====== ====== ====== ==================================== ================================ ================== 56 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TATCTTTTATATCCAATCTTAATGTTGAAAATCTTTTATTCATATTGATACCATATTCACTATTTTAGTCTACTTTCAGATAAAAAGCAATATACGAGTACCTATACCTTTCGATTGGACTTTCATTAAACACATTAAAAATCCGGCATATTCCTGAAAACATTTCGGAAACTAAATAATGCACGGGAATTCCGATGCATTATTTACTCTAAGAGCAAACAAAACTTTTAATCCGCCTACATATCGAGCAGCAAAACCAAAATGCAATACTCATATTGCTAAATTTCGATTTGTTTATAGAAATGGATAAATTACGGCTATAATATCAGTAAGCGCTTTTTCATCAGTTAAAAAAATTATTTTGCGGAAATAAAATGTATTACTCTTTCGGATCAACAGGAAAAATTGCATCTACAGCCTGCTTTCTTTCATCTTATGCTCCTATCCCAGGAGACACAAACTTTCCAAGTTCACCTTGAAATTGGTTTAGTGTATATGTT # Right flank : TGTGAATGGTGTAAACCTATACCTAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGAATTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAGGGTGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCCGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGACGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTATATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //