Array 1 94531-96418 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWE01000006.1 Pasteurella multocida strain HND03 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94531 28 100.0 32 ............................ ATGACGACGAATTAAATCATCATCAGAAACAA 94591 28 100.0 32 ............................ TTGACTTCCACCTGATCTTCAATGAGCACTTG 94651 28 100.0 32 ............................ TTGTGTTCTTGTTGAGATAATAATATGCCTTC 94711 28 100.0 32 ............................ TGTAAGAACGTACCAACTCTTTCATATTTTTT 94771 28 100.0 32 ............................ AAGACAGGGACACGTAGTGTTGAATACGTATA 94831 28 100.0 32 ............................ ATTTTCTCAATTCACGCATAATCATTTCAAAT 94891 28 100.0 32 ............................ ATTAATATTTGGCGCTGTGATTGTGCTATTCG 94951 28 100.0 32 ............................ TCTCTATTCTTAACTCCGCTATTTTTATCACG 95011 28 100.0 32 ............................ TTAATTCTATTAACTTTAGTTCATGCAAGTAG 95071 28 100.0 32 ............................ ATTAGCCTGCACGTTAACGTGACTAACTTTAT 95131 28 100.0 32 ............................ CGTTGCGATGTTGCCGAGCTCGAGTTTAGGTT 95191 28 100.0 32 ............................ AATTTACGCGGCGACGATCAGAATTGATCCAT 95251 28 100.0 32 ............................ ACCACTTATCGGGCGCGATTTTCTTCACGGAA 95311 28 100.0 32 ............................ GCATTTTTCAGCCACTCTTGCCATTCAGTATT 95371 28 100.0 32 ............................ AAGAACAACACCATATATCGCATGACTTATGC 95431 28 100.0 32 ............................ AAGTAATGTTTTCCGATCTTCTTCGGTAACTC 95491 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 95551 28 100.0 32 ............................ ACACCAGTCGATCCGGACAAAAACTTACTCAT 95611 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 95671 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 95731 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 95791 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 95851 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 95911 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 95971 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96031 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 96091 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 96151 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 96211 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 96271 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 96331 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 96391 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 135191-134863 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWE01000005.1 Pasteurella multocida strain HND03 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135190 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 135130 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 135070 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 135010 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 134950 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 134890 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //