Array 1 102071-103319 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJC01000035.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2012CEB707SAL scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102071 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 102132 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 102193 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 102254 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 102315 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 102376 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 102437 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 102498 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 102559 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 102620 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 102681 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 102742 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 102803 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 102864 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 102925 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 102987 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 103048 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 103109 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 103170 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 103231 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 103292 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118598-120092 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJC01000035.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2012CEB707SAL scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118598 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 118659 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 118720 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 118781 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 118842 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 118903 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 118964 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 119025 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 119086 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 119147 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 119208 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 119270 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 119331 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 119392 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 119453 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 119514 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 119575 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 119636 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 119697 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 119758 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 119819 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 119880 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 119941 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 120002 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 120063 29 96.6 0 ............T................ | A [120090] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //