Array 1 2824-3848 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFE01000108.1 Staphylococcus warneri strain SNUC 194 contig108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2824 33 100.0 33 ................................. AACACAGTGGTTGGTTACCCTTAACATTAGTAA 2890 33 100.0 33 ................................. AACCATCAACAACTAGCTTAAATTGTTTACCTG 2956 33 100.0 33 ................................. AACCGTCGGCTTTTTATTTTAGGAGTTGAAAAT 3022 33 100.0 33 ................................. AACTAATTTATACATCGAGAATTCACATCATGA 3088 33 100.0 33 ................................. AACAAATTATTTGGTTTGCACTTTTAAATACTA 3154 33 100.0 33 ................................. AACTAAAAGAGGGAACTTGGCGTACCGAAGAGA 3220 33 100.0 33 ................................. AACGGTATGGCGCTAACGGTTGGACAGGTTCTC 3286 33 100.0 33 ................................. AACAAAGATGGAGAAATATTAGACCCGGTGAAT 3352 33 100.0 33 ................................. AACTACAATAGAACGTACTTGCGACTTTCTCAT 3418 33 100.0 33 ................................. AACACGGTATTGTAGGCGAACCTGTCGACCAAG 3484 33 100.0 33 ................................. AACCAAACACCTAATGTTAAAGCGTCTTCAGGT 3550 33 100.0 33 ................................. AACTATGCAGAATACGGTCATACTTATTTAGTT 3616 33 100.0 33 ................................. AACGAATTAGGCTTTATCACTAACAAAACCGAC 3682 33 100.0 33 ................................. AACCAGAAGTTCTTGATTCAATGGATGAGTTAG 3748 33 100.0 33 ................................. AACCTGAGGCAGAAATTAATAAAATGCAGCAAT 3814 33 100.0 0 ................................. | A,A [3842,3846] ========== ====== ====== ====== ================================= ================================= ================== 16 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTGAGGATTGGAAATATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAGGATAAAATTGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTCAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACTGTCTATATAATAAATGATAAAAATAAGTCTGATCACTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACTATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTTATAGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAGTATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGCAAACTTTTTCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2570-2139 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFE01000004.1 Staphylococcus warneri strain SNUC 194 contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2569 33 100.0 33 ................................. AACTGGTCAAATGGAATTATGGTCATCAGTGTA 2503 33 100.0 33 ................................. AACACCACTACCTGATTTCTTTAAGTTTTCAGC 2437 33 100.0 33 ................................. AACGAGTTATTAATTCTTAATACTTACCATCTA 2371 33 100.0 33 ................................. AACGAGTTATTAATTCTTAATACTTACCATCTA 2305 33 100.0 33 ................................. AACATTATACACAATTTTCGGATACATCCAGTA 2239 33 100.0 33 ................................. AACTGAATAAGAAAGCATTCCTAAGCCAGTATT 2173 32 87.9 0 ....................G.A-........T | AA,T [2142,2146] ========== ====== ====== ====== ================================= ================================= ================== 7 33 98.3 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTGCGACCAGGGCAAGGCTATGTACATCATGTCGCAGTCAATCTACCTACAGATATAGACTTAAACGATATTTATGAGAAAATAGCACGACAACCTAACCCTAACTCCGGCATCATCGATCGATACTTCTTCAAATCATTATACTATCGACATAACCAAATCCTATTCGAATTTGCGACAGCAGAGCCAGGGTTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGACAAAAGAGACGAAATCGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAGTATGTATTACTAAAATTTTTAGTAGTAAAGATTTATACGCTAGAG # Right flank : AATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGACAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTTGTTTTAGAACAACTTATGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAAATTATAGATGCAGGAGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGACGAAGAATACATAGATTAGAACGAGTAAAATTATTACTCACAGAATATGACCTAATAAATAAAGAACAAATACCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //