Array 1 204268-202651 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVJ01000003.1 Salmonella enterica strain BCW_6291 NODE_3_length_367621_cov_4.59686, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204267 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 204206 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 204144 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 204083 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 204022 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 203961 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 203900 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 203839 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 203778 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 203717 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 203656 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 203595 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 203534 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 203473 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 203412 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 203351 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 203290 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 203229 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 203168 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 203107 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 203046 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 202985 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 202924 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 202863 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 202802 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 202741 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 202680 29 93.1 0 A...........T................ | A [202653] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 221546-220908 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVJ01000003.1 Salmonella enterica strain BCW_6291 NODE_3_length_367621_cov_4.59686, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221545 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 221484 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 221423 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 221362 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 221301 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 221240 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 221179 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 221118 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 221057 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 220996 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 220935 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //