Array 1 923994-925061 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906443.1 Corynebacterium ulcerans strain NCTC7910 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 923994 29 100.0 32 ............................. ACGTTGGAATCAACCCAGGCCCAGCCTTCTTG 924055 29 100.0 33 ............................. TGTGCGGCGTTCTCACCCAGCTGATTCCACGCG 924117 29 100.0 32 ............................. CGCCAGGCCCGCACTGTGGAAGTTGTGTTGCC 924178 29 100.0 32 ............................. CAAAGTTTCAATGAGTTCCCCATCAACATCGC 924239 29 100.0 32 ............................. TTCATCAAGATCATTACCGTTAGTGTCGATCA 924300 29 100.0 32 ............................. GTCACAGTTTTTTGGTGCAGGTGCTGTGGCCA 924361 29 100.0 32 ............................. GCCATCGTTAAAGGGATAGCCATGGGCGTAAT 924422 29 100.0 32 ............................. ACTCAGGATCGTTCCCATCAGGGAATCTGCGA 924483 29 100.0 32 ............................. ACTCGAAACGCTGCGCGGGTGTCATATCAGCA 924544 29 100.0 32 ............................. TGCTCGACGACTCAACACCAGGACCGTGGGTT 924605 29 100.0 32 ............................. TTCCCACCGTGGTGAGTAGGTGGGAAGTAAGT 924666 29 100.0 32 ............................. TTTGTTCCAGAGGCTCAAGATGTAGTCGATTT 924727 29 100.0 32 ............................. TGGGAGAAAGTGCTCACCGATGGATTCACCGA 924788 29 100.0 32 ............................. CAGCCCACAGGGACGGGCTGTAGTGCGGTCCC 924849 29 100.0 33 ............................. AGCGCAAATTGGATCGTGTGCGTGAGGATATAG 924911 29 100.0 32 ............................. TTACTTTCGTCGCAACGCCCCACCGTTGCAGT 924972 29 96.6 32 ............................A TCGGATCATTGGAACCAGCTTTCGCACCCGGG 925033 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTTTTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGCTTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGAGTAAACGCGCAGGTAAGTTAGT # Right flank : CGTCGTGCGGGTGCTTGTTGAGCACAGCATCGGCCCCACCTGGGTGGGCGTGAACCCAGTAAGCGGGAAAGACCAGTTTATCTGGCTTATTGACCCTGTTTACGCGGATGCTTCGGGTAAATCTTCGCAGATGAAGCTCCTCGCCGCGACTACACGCACCCTAGGTGAACTACTCGACAATGATCCCCACTTCGCCCACGGTTTTAGCCGCAATCCGTTCTACACGGGTAAGTCTCCGTCGGCTTATCGTTGGTATAGGCAGCATAATCGTGTGATGCGTCTAGGTGACTTGATAAGGCAGGTGAGGGACTTGGCCGGGACAGACCAGTACAAGACTGCACCACGCCAGCAGTTTAAGTCTGGGCGAGAACTCATTAACGCGGTGAAAACCCGTCGCGAAGAGGCACAGGCGTTTAAAGTTCTGGCCCAAGACGTGGACGCGGAAGTCTCCGCTGGACTCGACCAGTACGACCCGGAGCTCATCGACGGCGTGCGCGTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1507817-1508760 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906443.1 Corynebacterium ulcerans strain NCTC7910 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1507817 29 100.0 32 ............................. ATGGGGCCGGTTCCCTCCACCGTGACTGATTC 1507878 29 100.0 32 ............................. CGTGGAATCCCACAACCGCTGAAGGTGCAGGT 1507939 29 100.0 32 ............................. TGCTGAGTCAAAGCTTCAAACGTCACAACACC 1508000 29 100.0 32 ............................. CGTGTCTGGCGCACCGATGGTGACGATGAGGC 1508061 29 100.0 32 ............................. ATCTAGAAACACTGATTGACCAGCTAATTACC 1508122 29 100.0 32 ............................. TCGGGGCTGAAGGTCCCCACGCGGGGGCCGAG 1508183 29 100.0 32 ............................. TGGTGGACGGGGGCTACTGGCCAGACGATGAT 1508244 29 100.0 32 ............................. CTCATCGGTATATCCCCACTCGTATTCGTCGA 1508305 29 100.0 32 ............................. GATCATCACCAACATGACCGACAGCGGCGACT 1508366 29 100.0 32 ............................. AAGCTCATAAACGGTACGATCAGCGTATTCAC 1508427 29 100.0 32 ............................. CGGCCATAGCCTCGCGCCATTCCTCCACCGGT 1508488 29 100.0 32 ............................. ACTTTGCGCAGGATCAGCTGGACGGCAGTGCC 1508549 29 100.0 32 ............................. AATATCTTTGTGATTCGCCGGCGACAACGGCA 1508610 29 100.0 32 ............................. ACGTGTGGGGCGAAAAGAATCATCAGCTGGTG 1508671 29 100.0 32 ............................. GAGCAATTCCGCGCGGGCCTTAGCCCCTGAGC 1508732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : AGTATTGTGTTATTAAAATGCTTGTCAGGGACATTTGCCCACGGTAAATCATCTTTAATGTACTCTTGTTCAGAGGCCTGATGCCCTCCCCTCTTAGCGAGAGTAAAGATGTATTGACGAGTAACCCCATATTCCCTAGCAATCTGGGATTGGGTCATACCTTTACCCATTAGATGCATAACTTCTTCAGGTGTAATAACCATTATTCGTCTCCATTGTTGACATGTGAACAATAACTACCTTTTATTTATGTAGATGGTGATGGTGAATACAAATAAGGTGTTTGCGATAGACGTTACATATAAAAAATATATTTCTTAACTATGGTGAATTTCCTGCTCAATATCTATAAATTTGTCAGTGGCTAATATTTGTAAGGTCAGTTTTTTTGGGGGGTATTGATGACCATTCTGGTAACTCAGGAATGGTAAGCAGATTGTTAGAGATGGACTGTCTTTGTGCATGGTTTGAAAACTAAAAGTAATTGAGATAATAAAATT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAAATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGTTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 1589506-1588867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906443.1 Corynebacterium ulcerans strain NCTC7910 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 1589505 36 100.0 37 .................................... TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG 1589432 36 100.0 39 .................................... GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT 1589357 36 100.0 35 .................................... AGCCCACAGAACACTTACTGATTTAGTGGGGGAAA 1589286 36 100.0 58 .................................... CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAG 1589192 36 100.0 38 .................................... AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA 1589118 36 100.0 36 .................................... GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG 1589046 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 1588975 36 100.0 37 .................................... TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG 1588902 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 9 36 100.0 40 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATAGAGCAACAACGATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGCTAAGTCAGTTAAAATGAGGGGGCT # Right flank : GACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGAGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGCTGGTACTGAGTGATAAGCGAGCGTCAGGTAGTTGGAACTGCCTGGCGCTCATTCATTTTTCAAATGTCACCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCGCATTTGCGTTGTTCAACGCCACAGAACGATATCCAGTCCATCGTCTAGAGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAACATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGTCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //