Array 1 23416-23572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXIM01000042.1 Streptococcus salivarius strain 40-02 S18 SAS1801000042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 23416 25 100.0 41 ......................... TAAAGTATTAGCTCTTTTTAATTAAATTTAGTTTTGTTACC 23482 25 96.0 41 ................C........ TTAGAGGAAGGTTAACCTTTAAAGTACAAGGTTTTGTTACT 23548 25 96.0 0 ................A........ | ========== ====== ====== ====== ========================= ========================================= ================== 3 25 97.3 42 GTTCTATTTGACATGGTACTAAAAC # Left flank : GGGTGCAGGACTCAGCCTATAAGAAACTTCTAGACCAAAAACATTATATCTGGCATAAGGTAAAAAAAGCACGAAAGAACCGTTTTGGACGGATTGCTAATCAGATCTTGATGTTGGGTGATACCTTTACTCTTTATCAAGAGGACTTCAAATCCTTGCAATCTCGTAAGGACTACAACCCAGAAGAAATGTCTTGGTTTGACCAGCGTAAACAAAAAGGCTTTGAAATTATGTTTAATGCTCCATATGAATTTGTGGCTATTTTAGAGAATAAACTTTCTTTCAAAGACCTTAAACTGAACAAGATTAAACATAAGAAAAAGTGATATAGGGTTATTTGCTTGATTCCTTACCTCAAACGATAAATATGTTATAATAACTAAAAGGGTTTATTTAGGAACCTTCAAGGTAATTATGAATAACCTTGTAAATACCAGATAGCCTAACCGGAAGCCAAGGCAAGAAGGTCGGGAGCTGGTCCATGTCGAGGTTTTGTTATT # Right flank : CATAAACTGTATATCATGCACCTTTTAGGTGTTTTTTTTATTTTACGGTAAGTCACTTTTATTCTTAGGTTGCTATTTTTTTATGTGTTTGCTATACTAAAGACATAAATTTTTAATTTATATCTTTTTTTCACCACCTCAAACGGTGAACCTTTGGTCACGTGACTAGAGAAAAGAAGAAACATGGAGGAGGAGAAGTCATTACTGGTTCTGTCCCAGCAATCGGCATACCATGTTTTATATGGGGTTAAAAGGGAGCGTACTCGCTTTTAGCTATCAGTTAAGCCATCAGACAGAAGAAGAGGTTTGACGCTTTGAAACAGGTACGAGATATTTGCCTAATTGATTGAAAGGCTACAACAAACGTTATTAGCAATTAAGCATAACGAGAAGTTTTTCCTATGGTTTGCCATAGGCACGCGCATCCTTGTTTTTTGAGACAAGGCTTGCCGGCTTCTTTGTTATGCTTTTTTTGTTTTGAGTTTGGGTAGTTGGACAAA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTATTTGACATGGTACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 39829-39464 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXIM01000009.1 Streptococcus salivarius strain 40-02 S18 SAS1801000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39828 36 100.0 30 .................................... GAATGTATCTGTTGAAAGAAGTGTGGATGT 39762 36 100.0 30 .................................... AGCAATCTTCTCACTCGGATAAAACTCTTT 39696 36 100.0 30 .................................... TCATACTTCCTCTTTCTATTGCTTTTATTG 39630 36 100.0 30 .................................... TTAAAGTGCGTTTTCGGAAACGTTGGCACA 39564 36 97.2 30 ..................................G. GGTCTATCCAAACGCTAATATTATTATACC 39498 35 86.1 0 ............-................A.C..GG | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGAAAGCTTTGTCTCAGAGGAGTCCTATGATAGTTTTTATAATGAGATTGGTCGGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGACCAAGGCTATTTAAAGATTGATGAAAAGAGTAGTAGGTTCGTCAATATTTTATGTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTCCCAACGAGAGAGGGTTTTAGGAAATCCTTAGAGAATGTGACGCCTTATTTATTGACAAAAATGGTGAGACAACCTAGTCTCTCACTTGTTGATTCTGTAATTTTGAGTATACTAAATCAGTTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTGATTCAACTAAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATATACATAAGGGTTGTCAGGCTGACCGACCTCTTTGACCTCAGTTAAATTGAGGACAGGCAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAGCCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGTATGGTCTCACGTCCCTTGTACTTGGCTAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //