Array 1 170827-172076 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBIJ01000004.1 Brockia lithotrophica strain DSM 22653 Ga0215696_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 170827 30 93.3 31 ............................GT GCCCCGGCGCGAGCCTCTAGCCGAAGCGCTG 170888 30 96.7 31 .............................T GGCTGAGATGCGCCGCGCTGGTGTAAGCAAA 170949 30 93.3 31 ............................CA GCGGTGATGGCGCTAGGATATTCGGCACTAC 171010 30 96.7 31 .............................A GTCAAAAGACTTTGTAATAATTTGCCCAGGT 171071 30 100.0 31 .............................. ATAGATCGCCAAAAAGACGGGCCATGGCCAG 171132 30 93.3 31 ............................GA TCGCGGTCGCCGACTTCACACCCGACTACTC 171193 30 96.7 31 .............................C ACAAGCAAGATAGACGACGTAAAGAATGCAG 171254 30 96.7 31 .............................T GATGTAGCATCTAAAGAAGACGGCGTTGATT 171315 30 96.7 31 .............................T TTCTCACAACGTCGAATCTTAGTTGACTTGG 171376 30 96.7 31 ............................C. TCGACCACGTGTCCGGGTCGACTGAGCTCGC 171437 30 100.0 31 .............................. CTGAAAAAGGCCATCGGGGGAGAAGGCCGAA 171498 30 96.7 31 .............................C GAGCTCCGCTCTCTCATCGAATCGGAAACGT 171559 30 100.0 31 .............................. AACAGGCAGAAGTTATGGGGATGCCGCTTGT 171620 30 96.7 31 ............................C. CGCTGTCGTGCTGCAGTGATGAGCGCGGAGA 171681 30 93.3 31 ............................GC ACCTGGCCGTCCAGGTACGGAGATGAGGCGA 171742 30 100.0 31 .............................. ATGAGTATCCGAGATACATGCCGCCTGTTCG 171803 30 100.0 31 .............................. GTATAAGATCTTCCACCAGAAGACCTATAGT 171864 30 100.0 31 .............................. ATCCGCCCGCCGCGCCGGATAGTGGCACACG 171925 30 100.0 31 .............................. ACGTGTATCTCCCCGCCCCTCAGAACCCCCG 171986 30 96.7 31 ............................G. CTTGACAAAGATGCTCCTTAAGGGCAACGTG 172047 30 76.7 0 .....................GC..GGGGA | ========== ====== ====== ====== ============================== =============================== ================== 21 30 96.2 31 GTTTCCCCCGCGCACGCGGGGATGGACCTG # Left flank : AATTTTTAAGAAAAAGAACTTAATACCAAAAATGATCGACCAAATTAAGGGGTTACTTCATGTCGATGACAATTCTGGTGACTCGTAACGTTTCCGATCGTATGCGAGGATTTCTGGCTTCGTCTATGCTCGAACTTGCTCCGGGAGTATACGTCGGGGTTCGCTTTTCCCCGGCAGTTCGTGAACGCGTCTGGGAGACCGTCGAAGAGTGGTTTATCAGAGAGAGCGGGGCCAGTGTTGTCATGGTATGGCGTGACCCCACGCAACCGGGAGAAATGTCCGTAAAGTTTCTCGGGCTCCCACCCATTGACATTGTCCTGCAGGACGGGTTCCTCCTTGCAAGGCGTCTAAAGGAAATGTAACCTGAAGTAAGTGAGGCGCGAGCTCCGGTCCGTGGTCCTGCGTAAAGCCGAAGACGTCGTGCCGTTGAGCGTCTTCTGGAAGAGGAGTTACCAAGAACCAAAAAAGTAATTGTACCACAGAAAGAGTATTTGTCAAGG # Right flank : ATGGATGCCCGGATTTTATTTTTTATACCATCTCCTCAGATAGACAGCCTTCGAATTTTACTCCAAGCGGAGGGAATTCGATGTTCGATGCGCACTTGCACTTTGAGGCAATTGTATCCCGAGAGGACGGTACGATCGATTGGGAACGGGCAAAACGGCTTGTCGAGCGTTGGCGCGCAGGCGGCGTGCGGGGGGTATTGGCGGTGTCTGTGGATCGACCGTCGTCCGAAAGGACGCTTGAACTCAAGGAACGGTTTCCCGACTTTGTTTTTGCCGCTTTAGGCGAACACCCGGAGCGACCTTCCTCTTCGGAACGGGAATTCTGGGCGTTGGAGGAACTCATTCGGACAGAACGGGAACGGATTTCGGCGATTGGGGAGATTGGGCTCCCTTACTACGTCGGGGTCGAACGGAAGTCGGCGGTTTTGGAGCGCCTTCGTATTTTTGCTGCTTTGGGACGGGAGCTTGACCTCCCTCTCGTTCTGCATGCCGTCTACGAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCACGCGGGGATGGACCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 342766-346442 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBIJ01000001.1 Brockia lithotrophica strain DSM 22653 Ga0215696_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 342766 30 100.0 35 .............................. TTGAAAATCAAGGGCTCGCGGGCACTTTGTGAAAA 342831 30 100.0 35 .............................. TCGGCAATCAAGGCATAGAGAGCCATCGCAGCGGC 342896 30 100.0 35 .............................. TTTGGAGGATTTCAGTCGCATTGAGCGGTCTGAGG 342961 30 100.0 37 .............................. ACCTGCTTGGCTAGCTCCTCTCATTGTGGGATTGAAA 343028 30 100.0 35 .............................. CTTGGACGACGGTACACGTCCAACAACCGAATCGA 343093 30 100.0 35 .............................. AGAACTTATTCAACCTCGGTTTCCAAGGTTTCCAA 343158 30 100.0 36 .............................. ATAATCACCTGGCGGGAAAGCGATGTATGGGATTTT 343224 30 100.0 38 .............................. TACTGTTCTTTAGAAACCGCATCGCGAACTGTATTAGT 343292 30 100.0 36 .............................. TCCCGCAGTCCTTCTCCGGGTGCACGGGTGGATTTG 343358 30 100.0 35 .............................. CAACCTCCTCAACATCGATGTCGTTCTCAAAAATC 343423 30 100.0 37 .............................. AAGGGATTGAAAACCCTTGACGGGCCGAAGCGGGCGG 343490 30 100.0 36 .............................. CCGTGTCTTACGTAAACTACTAAGGTGGTGAAAAAA 343556 30 100.0 36 .............................. ATTATATTGGGTTGGGATTGATCCATGGGCAGCCGG 343622 30 100.0 36 .............................. TATCCGGCAATTGAGGCATCTGTGGTGTTTCAACAG 343688 30 100.0 37 .............................. TGCGGCAACCGGGATATCATCGACCGCGGCCCGGGCG 343755 30 100.0 36 .............................. CACGAAAACCAAAATCAATATCAAAAACTCCGCCAC 343821 30 100.0 38 .............................. ACGTCGAAGCTAGTATCGGCATCCCCCTCACCTCTCTT 343889 30 100.0 40 .............................. TGGATGGAGGGATGGCCGATGCTTCGTGCGGCACGTACGT 343959 30 100.0 35 .............................. ACAGAAGGTGCCTTATCAGGCAAGTCCGAATCGAA 344024 30 100.0 38 .............................. GAGACTTGACATGGTTGTCTCGATGTGGTATGAAGGGA 344092 30 100.0 36 .............................. TGAATCGTTTATTTGGTATTCTTGCCAAGGAGAAAA 344158 30 100.0 36 .............................. TTTAATTCCAGCGTTCATGACACGAGAAGTAAAACC 344224 30 100.0 36 .............................. AAAATAGTAGCGGTAGGAATATTTGCTTTCTTGAAT 344290 30 100.0 35 .............................. TCTTATGGCAATTATAAAAAGATAGCCAGAGAGAA 344355 30 100.0 36 .............................. TGGAGATGACTACGATGTCTAGAGCGCAGCGAGAGA 344421 30 100.0 37 .............................. TTTATATGTTTTCCAAAGTTTTTGCAAGAAAAATCGG 344488 30 100.0 36 .............................. TTCGAGTATATTTTATCAAACGAAGGCGCGAAAGTC 344554 30 100.0 37 .............................. AAATCCTCGCTAGCCTTCCGCTTGGCTAGCTCCTCCC 344621 30 100.0 37 .............................. CGGCGAGAGCGCGCGCGCACGTCGGTGCCGCGACAGA 344688 30 100.0 36 .............................. GCTGTTTGCGCCTTTAATCACAGAAATCGAGGCGAG 344754 30 100.0 36 .............................. ACATCCATCTCAAGTTGCTTCAGTTTTAAAAAGATC 344820 30 100.0 36 .............................. GGAGATTCTTCCGGGGGATTTTTTTGCCAACTAGTT 344886 30 100.0 37 .............................. TGGGATCCCGGACACCGCGAGCGCGATCTGCCGTACA 344953 30 100.0 37 .............................. TGTGATCGATCCCCCAGAGAAGAACAGGTAAAACACA 345020 30 100.0 36 .............................. ATCGCACATCGGCGAAAGCACAGGGCCGGAGAGCTA 345086 30 100.0 36 .............................. TCAGTACGGATTCAAGGCGATGAATTTCCCGAGCGA 345152 30 100.0 35 .............................. TTGCTCATCTAGCTTTCTTTGGACATCCCGAAGGC 345217 30 100.0 37 .............................. CCGATGAGCGCCGCGAAGTACCACGCGGAATAGCCGG 345284 30 100.0 36 .............................. AGGAGACACTCCTACGAGCCGCGCCGCCCTTTCCTG 345350 30 100.0 37 .............................. TTCGTATGGTATCACGAAATGACCACGCGGAGCAAGG 345417 30 96.7 36 .C............................ AACTAAAACATACTTTGGTTCTTTGTAATCCAGAAA 345483 30 100.0 35 .............................. GAATGAAATCAGTTTTTTGTTCTCCGTCCGCGCTT 345548 30 100.0 36 .............................. TTAGTGAATGATCATAATTAATTTTGGTGAGTGGCC 345614 30 100.0 36 .............................. GACGCTGTTTCATTCGAAAGGTCGACGATGAAGGGT 345680 30 100.0 36 .............................. TTGACACTGGTCGTCACAACCGGCGGAACCTATAGA 345746 30 100.0 36 .............................. AACCGAATATTTTCAGCCCAAGCCCGAGTCCCCCTC 345812 30 100.0 36 .............................. CGCAGCAGAGTCGGTAGGAGAAGCCGGAACCACGGC 345878 30 100.0 36 .............................. CGCAGCAGAGTCGGTAGGAGAAGCCGGAACCACGGC 345944 30 100.0 36 .............................. CGCAGCAGAGTCGGTAGGAGAAGCCGGAACCACGGC 346010 30 100.0 36 .............................. CGCAGCAGAGTCGGTAGGAGAAGCCGGAACCACGGC 346076 30 100.0 39 .............................. CTTTTTGATGGCCGTTTTTTCGAAGAGATGCCCACGCTA 346145 30 100.0 40 .............................. CCGTCATAGGTGATTTGTTCAACAGAATTAGATTCGAAAT 346215 30 100.0 36 .............................. TCACCTCCCGCGAACTCTTGCGGGACGCGGGACTGT 346281 30 100.0 36 .............................. AGCCACGTACCACACAAGAAAAACGTACTTGGTGCC 346347 30 100.0 36 .............................. ATGGGAATCCCCGCTCATGATCTATCCACATATCTC 346413 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================== ================== 56 30 99.9 36 GTACCAATCGAACCATTGTGGGATTGAAAC # Left flank : ACCATTTGAACTGGCGGCTCGTTGAGACATTTTGGCACGACGAGGAGACTTACAACGAAGTCAAGCAGGCCATAGCTTCGGGGGGTGGGGAGGGTGGAAGGTTTTGAACAAAACGGTGAAAGGAGTTCGGGGAGTCAGGGAGAAGAGGATAGCGGGGCTTTGGCGCTATTTGAAAGAAGTGGTCTGGGATAATCGCTTCTCCTGGTACAGAGCGGTTGGGGACCATCTATCTCTTGACGCACACCCGGCAAAACCGGGGTTTGCTTTACCTGCTGCCGCTGTGCTATAATTGCCGTCGATCGAGGTGGTCAAAGCGCACCGGAGGCCATTTGGCGTTTGGAAGGTTATGACAGATCCAGTAGTGGTGCGGGCTTCAAGGATCGTGAGTTGCCGTCGATCCCCTAGGGTTTTGGGGCAACTGGAGGTCGACGGCAGTTCAGGGTAAGATTCGAAGGCGGGAAGTAAGGAAAATCAAGGCATTTCGAATTCCGACGGTCTTG # Right flank : GCCTTGTTGAGGTCAGACTCTTCGTGGCTATCACGGGCAAAGAGGAAGTCGGGGGTAGCCGGAAGGCTTTGAAGAATAAGCTGGTAATGAGCGTTGTAGGCGAAGGAGAGAGGTTGTGGGGGGAGGTTCACTTTGGGGTAGCGAGCCAGTGGGACATAGGTCAGGTGAAGGAGATATACCTTGGGAACGACGGGGTCGGAGTGGGCCGAGCAGGGGGTAAATTACTTCCCTGGGGAGCATTGCACGTTTTGGATCCTTACTATTTGTTGAACTGGCGGCTCGTAGAGGGATTTTGGCACGCCGAGGAGAATTACTTCCAACGAAGCCAAACAAGCCATAGCTTCGGGGGATTGGGGGGTGGAAGAGGTTTTAAACTAAGCGGTGAGGAGAGTTCGTTGTCAGCGCGGTCCAACGGGGAGCTAGAGGAGCTAGAGAAGTAGACTTCTCGATGGGAGCTAAGGCTGGCCGGGCAGGAGCACTTGGCCCAGGCGGTGCAGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCAATCGAACCATTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 369163-368462 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBIJ01000001.1 Brockia lithotrophica strain DSM 22653 Ga0215696_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 369162 30 93.3 31 ............................GT ACGGGTGCGCGTGCCAGATGAACCCGGACTG 369101 30 93.3 31 ............................AT GCCAGTGTAGGTGCGGCGCAAAAAGTCAAGA 369040 30 100.0 31 .............................. CTATGCGGCCCAGCAGGTGGAGTCTGAGCTC 368979 30 93.3 31 ............................TA AAGTAGGTGGTGATGGCATGAAGACCATGAG 368918 30 96.7 31 .............................T GGACAGGTCGTGGAAGGCGGCGTGGTCGCTG 368857 30 96.7 31 .............................A AAATAGAGGCCTCATCAATTATTAGAAGAAT 368796 30 100.0 31 .............................. AGCGGATCGACCAGCTTGAGACCGCTCTCAA 368735 30 96.7 31 .............................A CCAGCGACAAGACGTTTAGCGGTGCGGTAGA 368674 30 100.0 31 .............................. CACCGCCAACGAGAAAGATGATCGCGGAAAT 368613 30 96.7 31 ............................G. ACAGGGTAGTACTAGGACAGTACCGCCCGCT 368552 30 93.3 31 ............................GC AGCCCATCGTGGAGGACGGCGATATCGCCGT 368491 30 93.3 0 ........................A....A | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.1 31 GTTTCCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGTGCAGGGATTTTCGACGGGGATTACGTTCTCATCCGCCGCCAAGACACGGCCGAAGAAGGAGAAATCGTCCTCGCCCTTACGTCCGACGGAGAGGCAACGATAAAACGCCTTCGTTTTCAAGGAAAGCAAGCGGTCCTCGTCGCGGAAAACCCAGAGTATCCCCCACTCACCGACCTCGAATTCCGCATCCTCGGCAAGGTGGTGGGCGTTTTTCGCGTCCTTTCGTAGTTACCCAGAACGATGGGTTTGTCCGTGAACGCCTTTGTCCGGTACAAAAACAGAGACAAGGCCGTTCGCTGGCGGCACCGGATTTCCGGAACGGCCTTTTTGCCGAGGTTTCCGCTTGACGGGCAATCCGAAGAAAGGTAAGTTAATGTCCAGCAAGGTGAAGTTTGTTAAGCCCGCTCGACCTTCGGTGATCCCCGATTCAATGGAAGAACGATTGAGCGGGTCAGTGGAAGGCGCGATTATACCACAAAAAAACCTGTTGTCAAGG # Right flank : CCGCAAAAAAATTAGGCCGCGCACAGAGCGGCCTTTTTCTTTACTCGTTTCAGTCCGTTCGTCGTAGGTTTGCATTCGTTTCATGTTTCGTTTCTTCGCACACGAGGACGTGCGGGGAAAGTCGGCTTGGGTTTACGTCGTAGAAAGCCGAATCTCAGAATATCCCTTCTCCAAGAGGCGGCGGGCTGCGTTGAGGATCGCGAGCTTGACGTGGGCATAGGTGAGCCCTCCTTGGAGATAGGCGACGTACGGAGGCCGGATGGGAGCGTCGGCGGAGAGTTCGGCCGTCGAGCCCTGGACAAACGTCCCTCCTGCCATGACGACCGGATCGGCGTAACCTGGCATCTCGTCGGGAACCGGCGTAACGAAGGCATCGATCGGAGAGGTCTCCTGGATTGCGGCGAGAAACTCGAGGAGTGCGGCTCGGTCGCCGAAACGGATCGCTTGAATTACGTCTGTTCGAGGCTCGTCCGCCGCAGGGGAAACGGCAAAACCGAGAC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 746086-746342 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBIJ01000001.1 Brockia lithotrophica strain DSM 22653 Ga0215696_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 746086 37 100.0 37 ..................................... GCTTTGTCTTCGGAAGGGCCGTGATGTTAAGCGCAAT 746160 37 100.0 37 ..................................... CGACGGACTGCTTCGGCTTATACACGTTTTAGACGGC 746234 37 100.0 35 ..................................... AAAAATACACCGTTTAGGAAAGCCCCGAAAAGGAA 746306 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 37 GCTTCAACGTTGCCGCCTCTTTCTAGGCGGTTAAAAC # Left flank : GTCTTAACAATATTATTCCAAAACATCACAGTTAATTGAACCAACCTCAAACTCGCCGACGCTCCCCGCTTCCTTTACTCCTCCCCACCAATCACATCGCTCACTACCAAAGACTGGCAAATAAAGAGTGGTAAAGGTGAAGACCCATGTTTTGGATTACTCTACCAAAATACTCCAAACAAGTCAAGTGTTCCGGCTTCGGAAGAAGTGGATCTGGCACCGTTGCCACGTACAGCCCTGAAATTCGGTATGAGGGTCTTGACGCGCCCGCTGCTCTGTGACCATCGCCACACCTCGAGTCAACACCCCGATTACCGCCATCTCCATTAAAGCGAGAAGATAGGCTTGCTCGCCACACGGTTATCGAGCGAGAAGCCCCGTTGGAAACATGCCATTTTGAACCCCTGTAACGCGCAACGTCAGTCACCCACCTGTGTGGAGAGCGTACATGTGACGGTTCCATTGCGACAACCACTTCACGTCTAGTAGATTCAGCCATC # Right flank : CTCCGGCCTCTGCAAGCCCTTGTCCCTCCGGGCTTTGCAGCCCCTATTCCGCGAACCTCCTTTTGAGGGAGCAAAAAAAGAGCGATCGCATGGCGCAAATCCCGGAAAAGCCTTGTGCCGCTTGCACCGCGAACCCCCCACCCCTGGCGTCACCACTGCCGATCCGCGATGTTTGAATATTATAGACATTAGACAACATACACGGGCGTTGCGACGCTCTTGTACCCCCCTCGGCCAACCCTATACTGGGGTACTTCAATCTCCCCGATGATCCCCAGCTTCCTTCGATCTTCCCCACCAACCGCATCGCTTACCACAAGGTGGAGAAGGCTTCGCAAGGCTGGCAAAGAAAGCGGAGCACGCCATATGGGAAACCTGATCGTTACGTTTCCATTTTGACGAATAACTCCGGGCAAAGTCAAGTCGCGCCGACCCCGGGTGAGGTAGGTTACGTAGAGAGGCAGCGATTCGAACGCCAGCCACTCCCCCACTGCTTCTGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACGTTGCCGCCTCTTTCTAGGCGGTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.60,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 4 800241-799764 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBIJ01000001.1 Brockia lithotrophica strain DSM 22653 Ga0215696_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 800240 37 100.0 36 ..................................... CAGTGAGAAGAAACGTGAGGATGAGGAACAGAGCGC 800167 37 100.0 38 ..................................... AGAAGATAAGCCAGTCCTATCTCGCCTGTTCCATCAAA 800092 37 100.0 36 ..................................... TACATGCTGCAGGCGATGCAGATAGGTCATGAGGGA 800019 37 100.0 37 ..................................... TTTAATGCGAGTTCGATCGCGGTATCCGTGTCTTCAC 799945 37 100.0 37 ..................................... GAAGACATCTCCTTCCGTCTTGAACCCGGTGTTGCGC 799871 37 100.0 35 ..................................... AAATCGTGGAAGGACGCAGGGGGCTGCTGATCGAA 799799 36 86.5 0 ............................TT..-..TT | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 98.1 37 GTTTTAACCGCCTCGAAAGAGGCGGCAACGTTGAAGC # Left flank : ATAAAATAACTTTTATGTCAACAAATCCAGTCCGATCTTACAGTTTTTGTATTTTGCAAAATATTTGATAATATGTAAAAAGCATATCCGTTTTTTCGGGCAGAGGGTCAATTGTTTCCCTGCGCTTCCTACCGCGGATCTCAGAGTCGATTTCCGTCGAGGCGAGTTTGACGGCCAACCGATCTATGTGACCTACCTCACCTGAGGCCGTCGCGACTTGACTTTGTCCGGTATTTCTTGCCACAATAAAAGCACATCGATCAGATCCCCCATATGACGAGCTCCCATCATTTGTCTGTCTGGTGATGCCCATTGTCCGGAATATTCAAACATCGCGAATCGGCAGTGGTGACGCCAGGGGTGGGGGGTTCGCGGCGCAAGCGGCACAAGGCTTTTCCGGGATTTTTGCCGTCCGATCGCTCTTTTTTTGGCCCCTCAAAAAGAGGTTCGCGGAATAGGGGCCGCAAAGCCCGAAGGGACAAGGGCTTGCAGCGGCCGGA # Right flank : TTATACCTATCTTGATAAATAGGGAACATATGTTTTCTTTTTGAATTTAAATTATAAAGTTTATAACGATATAAAATTTTAATTATTAGTTATTAAAAGCATGAATATTTTAAACATTGTTATCATTTTTTGTTCGTGATCCTATATTTGTTCCGCTTTTCCTTAGAATAATATGCCTAATTTGTCCAGGGTCCGTGCATATGTCGCGATACTTTTGTGGTGAGACAAATAAATCAAACGACGTCTTACGGAATGGCCAGTCGGCTGTCTCTCTTTCATTGCATTGCACTTCGTCGGGATTGATTTCTGTCGCGGCGAGTTCAACTGTCAAACGGACAGTTCGTCCTTCGTACGCGCGCCTCACGATTCGTACTGGGATCCCCGGGGGATATTTGCGAAGAACCCATTCTTCCGGTCGCACCGGAAAGCACCCAGCTTCGCGAAACGCAGGGGGGATGCTGGTTCCGTCCCAAACCTCATCGCCTACATATCCCAAAGGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACCGCCTCGAAAGAGGCGGCAACGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.20,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //