Array 1 430278-432257 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUN01000080.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_t24 t24_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430278 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 430339 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 430400 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 430461 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 430522 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 430583 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 430644 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 430705 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 430766 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 430827 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 430888 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 430949 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 431010 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 431071 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 431132 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 431193 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 431254 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 431315 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 431376 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 431437 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 431498 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 431559 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 431620 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 431681 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 431742 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 431803 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 431864 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 431925 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 431986 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 432047 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 432108 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 432169 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 432230 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 448521-449953 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUN01000080.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_t24 t24_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448521 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 448582 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 448643 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 448704 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 448765 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 448826 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 448887 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 448948 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 449009 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 449070 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 449131 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 449192 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 449253 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 449314 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 449375 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 449436 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 449497 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 449558 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 449619 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 449680 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 449741 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 449802 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 449863 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 449924 29 96.6 0 ............T................ | A [449951] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //