Array 1 144-911 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000011.1 Paenibacillus sp. SY21-1 SY21-1_ctg0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 144 33 100.0 34 ................................. TCATCGTACCATTTTCCGGTGATAAAAAAGGGCA 211 33 100.0 35 ................................. CAAAAGTAATCCCAAAACCCCTTGTCGCCCAATGT 279 33 100.0 34 ................................. ATCGGTTATAAACCGAATGGCGGTATACGTCCCC 346 33 100.0 35 ................................. CGTTCGCAATATGAAGTACAGCACCTATAGCCCTG 414 33 100.0 33 ................................. TTCCACAGTAGTATTATTAAGTAATAGTAGTAA 480 33 97.0 33 ...T............................. CAAAGACATTAAAGCTGTCTTCGCCGGTGTAGA 546 33 100.0 33 ................................. TTGCCCCATTTCCGCACCGACACATTTTGCAAA 612 33 100.0 34 ................................. TTTCACTTGCAGGTGCTTCAAGACTTGAAAGCCG 679 33 100.0 34 ................................. AACACCTGTACTGCCACGAGGAAGCGATGGAAGA 746 33 100.0 34 ................................. AGGTGCAACTAACCGTCCACAAGGCCATTGGCGG 813 33 93.9 33 ...............................GT TTTTGCAGCAGTTGATCACGATACTGAAGGGTT 879 33 90.9 0 ...............A.....T.A......... | ========== ====== ====== ====== ================================= =================================== ================== 12 33 98.5 34 GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Left flank : GTACCGCTTCTTCTTTGAACGTTTTGTCGTATTGATTCATTGTCTCTCGTCCCCTCGTCTGCTTTCATTTTATTCCATACGAGGGTGTTTTTCGACTGCATCTTTATAGTAGCACTCCATAAAGACCAATCTGAAGCTTTCATG # Right flank : CAACCTGAGAGATTACATGGATAAACAGCACAGCCGTCGCATTCTGAAAATATCTCTAAGAATGACTATATCTTCGGTCATCTGTTCGGCGCCATCGTTATTCTGTTCGGCGGTTCCCGAAAATGGTTCTGTCTGCCCTTATCCATGAATGTACAAGACAGCATTCAAACTATTCTGAAATGGAACAGGATGAGTAATGAGTCTGAGTCGCCTTCGCATGTCGTTCAGATGATTGAGCAAGGCTTCGCAGCAGCCGAAGCGTTTGGTCATACGTCGCTTTTGCTGGACCACAGCTTTTCGTCACTCCTTGTTTGAAAGCGGATACAGGTCTGCTAATTGGATTCCGAGACCCGGATGCATGGTGATCAAAGCACGATCCAATGTGATCATCTAAGAACGTCCTAATGCCAAGAAGTCTAGTCGTGGGCGTCCACCCAAGAACGTCAAGGCGCTCAAACTCAAGGCGTTGTTTAAGACCCGCGCCGCTGATTTTCAAACGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 10433-13265 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000011.1 Paenibacillus sp. SY21-1 SY21-1_ctg0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 10433 33 100.0 33 ................................. AAAAGCAGCGCTATACTTTGAAACAAAGGGTTG 10499 33 100.0 34 ................................. AGCCATTCGCCCCATTCGCCATGACTTACAAGCG 10566 33 100.0 34 ................................. CTCCATTGCGATTTGATCCAGCAAATCGAATGTC 10633 33 100.0 34 ................................. CCATTGGAGGGATAAGCGATGTCAAAATATCAAG 10700 33 100.0 33 ................................. CTGTGCCAAGCGAAGCTATACCATATACCTGCT 10766 33 100.0 33 ................................. TACCATTTGCCAAAAATGCTCTGGTCCAGGACT 10832 33 100.0 33 ................................. GGCTGGTTAATGGTTTCAGGCTTACGCGACGTG 10898 33 100.0 34 ................................. GCATCAGGAAACCGGCTGTATCCTGTCCCGTCCA 10965 33 100.0 33 ................................. TCTCACTAACCACCTGATTTCTGGACCCAACTT 11031 33 100.0 33 ................................. TGGCATGTTATGAGTCAATGCGACGCTACGACT 11097 33 100.0 35 ................................. ACTGCTGGTTCTTTTTCTATGAAATTTGCAGCGAA 11165 33 100.0 33 ................................. AAACTCTACCAGCAGCAACAATGCGGCATAACG 11231 33 100.0 34 ................................. TTTTAATACGCCTAATTGCCCTCGTCCGGCGTAG 11298 33 100.0 33 ................................. GTCAATGTAACTGGCGTAGGGAAATTTGAAATC 11364 33 100.0 33 ................................. GGATTGCTGTGTAACCAGCTCCGTTATGTTGTT 11430 33 100.0 35 ................................. GTATTGCTTCAAGGACTTTGCTTATCCACTTGATG 11498 33 100.0 35 ................................. GATATAAAACCACGCAAGGGCGACATATTGCTTGC 11566 33 100.0 34 ................................. CCCTCCTATATTGGCAGGTCCTCGCCCGTTCCTG 11633 33 100.0 34 ................................. AGCCAACTTTTCTTGGGTTAACCCTGCTCGCTTA 11700 33 100.0 34 ................................. TAAGTTATCTGTTAACAACATACTCAAACTAAAG 11767 33 100.0 33 ................................. CGTGAAGGCTATCAGAAAGCAGAATGGCCATCA 11833 33 100.0 33 ................................. AGGATTTGCAAAATGCGATAGATGCGCTCAAGG 11899 33 100.0 33 ................................. GGCAGCAGCTTGTCCGACATACAGGCGCGATGG 11965 33 100.0 34 ................................. CCATGAAGCTTGGCAGCAACAAAATATCTCATTT 12032 33 100.0 33 ................................. GTTATGGCAACCATGATCAATCAGCTTAATCAA 12098 33 100.0 35 ................................. CGGTTTCCGACTTTGGGGCTGTTTCTGCCGCCCCT 12166 33 100.0 34 ................................. TTTTCGGCGTCAAAAGTAAGAACGCGGCAAGGTA 12233 33 100.0 34 ................................. CACTACTTCATAGCAGACGGCTACGAGATCGAGG 12300 33 100.0 33 ................................. GTTTGTTACGCGAGCCTTTAACGTTACCTCTTC 12366 33 100.0 35 ................................. ACAGACTGCATTGGCCTTGATGAATGATTCCGTGA 12434 33 100.0 33 ................................. AATCAAACAGGCTGGGACACAACTATCGAAAAA 12500 33 100.0 34 ................................. TGGACAGGTACAACATCTGAAGAGAGAAGGAGGT 12567 33 100.0 35 ................................. AACTGGCGGAGACTTTTATAAGCAATCCGATTTTA 12635 33 100.0 34 ................................. ATCGTCATTGTTCCTGTAATCATGTTATCGTCTC 12702 33 100.0 33 ................................. CGGCTCAGAGGGAGATCAATACGATCCGGTCTA 12768 33 100.0 34 ................................. TGTGGCCGTCCAACGCACGATAGTAACTTCGCTT 12835 33 100.0 33 ................................. GCACCCAAGGCGTTGACGTCGATCGTTGGATTA 12901 33 100.0 34 ................................. TTGCCCCACGTTGGCAATACTGCTGTGTATGCCA 12968 33 97.0 34 ........................A........ CAAGACTATACGTGGGGGCAGCCGGGCAACCTGC 13035 33 97.0 33 .........T....................... ATTCAAGTGACGAGCGATCGATTGAGTCCCCTT 13101 33 100.0 34 ................................. ACAATGACAACCTTGTGATCATCTCCGAATAAAG 13168 33 90.9 32 ......T........T.A............... TGATTCAGCAGTTGCTCATATCCGCAACGAGG 13233 33 93.9 0 .................A....C.......... | ========== ====== ====== ====== ================================= =================================== ================== 43 33 99.5 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : AAGGTATGCTCGTATTAATTACTTATGATGTTAGTACATCAAGCAAGGAAGGGCGCAGACGGCTCTCACGAGTGGCTAAGACTTGTCTAAACTACGGTCAGCGGGTACAAAATTCCGTTTTCGAGTGTATTGTAGATGCGACGCAATTTCGCCAACTGAAGTATGAATTAGAGGAGCTAATTGATAAGCAGACCGATAGTCTGCGCTTCTACAATTTGGGTGACAATCACAAGAGCAAGGTTGAACATATAGGTGCAAAAGAAGCCTATGATATGGAGGCTCCGCTTATTTTATAGGCGAATTTTTTTGTGAACGGTTGGTGCGAATGTGAAGCTCCCATAAAAACCCTAGGGGATTCGCACCTCAGAAATTGTAGAGATATGTCGAATTCAAGCTGCATCAAGAAAAGTCAAGGTTTGACCCAGATTTTTTCGATGATTTATTAATTGAAAAGTAGAGTGATTGATGCCATGTTGGCATTAATCACTTATCTTTTCGCT # Right flank : CACGATTGCGCCATCACCCTATATTGTCATGATAATAGATTTACCAAAATCGAATCACTTATAGATGCATGGAATGAGAGCTCTATTTTGACAGGGTAGGGGTCAAAGCTGAGAGGTGCCGTCCCTTAATGGATGCGATGCTCAAGTTGAAATATCGTCAAGCGTAAGACATGGAACGAGGATAGTTGAGCAGATAGACCAATTAAAAGTGTGATCCGAGCATATCAGTCGTTGCAGTATAACGGGTTCCCGATCGGTCAGTAACGAAAGTTTCCGACTTACGGCCGACGAAGAGGCGAAATGGTTGGTGGTGTTGAAATACGAGACCGGGCATATGCTCTACCGTGACGGCTAGCGGATCAGGTTGACTCAATATAGAATATTGGAGTCGCTGTAAAAGATCAGGGCACTACGATAAAATTGGAGATGCAAAGGTGAATATTCCTAAAATAAAAATTGAAGCCTTGGAGCGTAATTCCCGTTCTTTCCGAAAGATATTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 30057-30556 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000037.1 Paenibacillus sp. SY21-1 SY21-1_ctg0037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 30057 33 100.0 34 ................................. CGGTTATTTTGACAAGCTGGGAATTAGCGCTCAA 30124 33 100.0 34 ................................. AGTCTCCGTCATCAAGGTCCATGATGTCAGGTTT 30191 33 100.0 36 ................................. CCCGTTCACAATAACATTTTTAAGATTGGCACCGAG 30260 33 100.0 33 ................................. TCTCCGATCATTGGCCGACCACGACCACGGCCG 30326 33 100.0 33 ................................. CTGCCAGTGATTAGATCGCGCCCGCCGTAGATT 30392 33 97.0 33 ................................T GTCCTCGACATAGAGCGGCGTCTCTGCCGAAAC 30458 33 100.0 33 ................................. GTTTTGCGTCAACTGATGTCGAGCCGAACGTTT 30524 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 99.6 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : AACCTGCTTTTGCAAGCAAGTACGCAGTCGTAATCCCCGTGATTCCGCCGCCGATGACAGCTGCTTCCGTCTCGCGATTGTTCTGGAGCGCTGGAAATTCCGGGAGCTTCTCGCAAGAAGCTTGCCAATAAGATTCGGGAAATCTCGGAAAGGACGTAGAATTGGACACAGCCTGTTGCCTCCTTATAGGTATGCTGTGTTTAACGTGTCCAGAAAAAGGAAAGGTATGCAGATTAGAAGGGAATAGTTGGGGAGATGATGAGTGGATTTAGTAGTTTTCAGAAATGTGGGGCCCAATTCTGCTTAAGCAGCCGTAGTGGTGCGAATGTGAAGCTCACATGAAAACCCCGGGGCATTCGCACCTCGAAAATTGTCGAATTTCAATATTTTCCTACAATGTGGAAAATTTGAAATGTATGATTTATACTTTTTAGAGATAGCTTTTGGCGACATTGGCTGGCATTGATGCTGTGTGTGGATCAATGAGGGACATTTTCGCT # Right flank : CTTAGGAGCCTTTGCAAAGGCTCTTTTTTTGTTTATTAGCCTGTAATGTTCTTTTCAGCTAGGTTATAACTTCAAATCTTTTGTGATAACATGATGGATATTCTTAAGTAACGGAGGTATGACCTTGAAATCGGATTTGCGTGTAGTGTCTTCAATTCGCAGGTGGTTCGGCCGACTGCGCTTCAAAAGCAAGGTTATTACCGTGTTTTTTCCGCTTCTTGTCGTGTCGCTTATCACGCTGGGGATTTTGTCCAGCCAGGCGTTCAGCCGCTCGCTCATCGACCGGACGACACGAAATGTAACGGATCAATCCGAGCTGATATTGTCGCGTACAGATTATATTTTTCAAAGCGTGGAAACGACAGCCAATATTATGGTGACTAATATTAACCGTCTGTATGAATCCTCTCCGAATCGCTCCGATTCGACCATTGAAGAGAATCGTTTCTCCGATATGATGCAAAGTCGCTTAATGATTGACCTGTCGATCTTTCGTGAAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 58649-59482 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000037.1 Paenibacillus sp. SY21-1 SY21-1_ctg0037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 58649 33 100.0 33 ................................. ATATTCCATATTGTGCAATAGGGAGGAGGAAAC 58715 33 100.0 35 ................................. TTGCGGTCCGGAGCTGCAAAGATAATTGTGTAAGG 58783 33 100.0 33 ................................. AAGAATCTCCCGTGCCAACTCTAAGTACATCAT 58849 33 100.0 33 ................................. ATTGAACACCCTTGGCGCCCCGGCAGAGTAACA 58915 33 100.0 33 ................................. CACAATACGTTTGATCGTTTTGGTGCTGAACTT 58981 33 100.0 33 ................................. TGCGCTGCCGACCTCTTTACCTCGTTGCTCGCC 59047 33 100.0 35 ................................. TTGTCAGCACCAAGCACTTCCCGACTGTCCTCTAG 59115 33 100.0 33 ................................. TTCGGTTTTAGTCGGGCCAAAACCTTCATGCAT 59181 33 100.0 34 ................................. ATTGTCATGAGCTCGTTAACACCAAAATCACCGA 59248 33 100.0 33 ................................. TTTAAGTGGTTTGGGATGTGGGTAAAACAATAA 59314 33 100.0 33 ................................. CACTACTACACGGCAGACGGCTACGAGATTGAG 59380 33 100.0 34 ................................. TTCCTCGCGGCTAAGGAACGTCTGGAAGATGCGG 59447 33 84.8 0 ....................A..T..A.A...G | G,TC [59466,59473] ========== ====== ====== ====== ================================= =================================== ================== 13 33 98.8 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : GTGAACTGCGGGCTGAAGCTGTTGGTTACAAGAAGAGTATTCGCAGGCTTGGCTTGCGGATACTCCTTTTTTTATATGTATAGGATTCATGGGCGGATGCTTCATCATAACGTGACGGAGCAGGCTGTATTAGTTCAGTCGTCGAAAGCGCTAATGAAATGTACAGAGAACAGCGAGAAGCTTCCGAGAGCTCCTCTTGACTGTACACCTTGCGGTAGCTAATTAGAGGATGGGATGCATTCAGAGAGCAAGGTTTAACCGGAGAAGGAAGCGGGGACGGCCTCAAGGATTAGCAGAAGAAGGCTCGTAGCAGATTCAGGTGCGAATGTGAAGCTCACATAAAAACCCTGGGACATTCGCACCTCGAAATTTGTCGAAAATGACATTTAATCTGCTTTATGGAGAAAAGTCAATAAATGAGGTATACTTTTTTTGGATAATACTTGTGCGAGGATGAGAGGAATGATTCCTGAAAGGGATCAATTGACGTCATTTTCGCT # Right flank : TGCAGTTTGAAAACACACTCATGCTGAAATCCTGTTGCTAGGCTGCTTGTGACAGCACTCTTTCGCGATAAATAGCTGGGGGCCAGCCCCCTGGATTGGAGGTGTAGATTCGCTGCCTGTTGTAGTAGACCATGATGTATCTGAAGATAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 418-183 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000046.1 Paenibacillus sp. SY21-1 SY21-1_ctg0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 417 33 97.0 35 .............T................... TTGCTCGACCATAATCTCCAAGCCACCTAACGTAT 349 33 97.0 34 .............T................... CCATGTCACTCTCTCCCCTACCACCATTTGATTA 282 33 100.0 34 ................................. AAACATATTCTTTCGTGGTGAGACGATCGGTATT 215 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 98.5 35 GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Left flank : AAAAAGAACCTGTACCTATGAATGCGTCCAGCCAAGATGAGCAATCTGCTGAGAAAAAGGATTCTTACCGTGAAGTTGAACTTAATCAATATAAGATTAAGAATGAACATGAGCCCAAAGAAGAAATTGCATTGCTCACTCTTATATTTCAACTTAATCAACTGCTGATGCTTATTAATAATCCATTGCTTTTTCCGCATTTATCTTATGTAGAAATGTTCAAAAAGTTTGCCTTCCAAAAGCCTGACTAAGTTTAAAGTCCACCAGAGAATAGGAGTTGTAGAGTATTTAAACTAGCAGTAGCTTTATTACTAGCGTGGTGCGAATGTGAAGCTCACATAAAATCCCTGGGACATTCGCACCTCGAAAATTGTCGAAAACGATGAAATATGAGTAATATGGTGAAAAGTCAATAAATGAAGTATACTTTTTTTGAATAATATTTGTACGAGAATAAGTTGATTGATGCCTCCTAGGGATCAATTGGCATCATTTTCGCT # Right flank : CAGCTTGCTCTAATGGAGTTGTCAATAAAAGTGCAGTTTGAAAACACACTCATGCTGAAATCCCGTTGCTAGGCTGCTTGTGACAGCACTCTTTCGCGATAAATAGCTGGGGGCCAGCCCCCTGGATTGGAGGTGTAGATTCGCTGCCTGTTGTAGTAGACCATGATGTATCTGAAGATAATC # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 11215-8715 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000046.1 Paenibacillus sp. SY21-1 SY21-1_ctg0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11214 33 100.0 34 ................................. TCTGCCTCGCCCTCTGCTTCGGGAAAATTCTCCC 11147 33 100.0 34 ................................. GGCATTGGCACAAAGGTTTCTTTGTCCCGAGCCT 11080 33 100.0 34 ................................. GGCATTGGCACAAAGGTTTCTTTGTCCCGAGCCT 11013 33 100.0 33 ................................. GACATACGGCTAACCCCCTAACTTGTCCATCAG 10947 33 100.0 35 ................................. GACCCGTTTAGGTGAATTATACCCTAAAATCGGAA 10879 33 100.0 34 ................................. GTCCATGTTAAAAGCGCCAGCCTCCGCGCCTTTA 10812 33 100.0 33 ................................. AACAACGTATGCTTGATTCCGATGCGCAGAGGA 10746 33 100.0 33 ................................. ACCTGTGACGTGATGATCTTACGACCAACCTTG 10680 33 100.0 33 ................................. TCCGTTGCTATTGAATGATTGAATGCTTTCTAG 10614 33 100.0 34 ................................. ATACACGGCCATTACGGGCCCGACGATCCTGCTG 10547 33 100.0 33 ................................. TAAATAAGGAACAATATCCACATTGCTCCCGTT 10481 33 100.0 33 ................................. CAATTTCTTATGTCATCATTCGTTATAGTTGTA 10415 33 100.0 33 ................................. ATTAATCCGCTGTTTTGCCATTAGTAATGCTAA 10349 33 100.0 35 ................................. CGGTATGCCCATCGAGGTCTATCCGCATATTGGCC 10281 33 100.0 34 ................................. CCGCGCCAGTAATAACGGTAGCTCCAGACGTGTT 10214 33 100.0 35 ................................. ACTTAAAATGAATGGGTCAGGGCGCACCATCCGAT 10146 33 100.0 34 ................................. TTATCGTCACGATTCAGCTTCTTGAATTCGCCTA 10079 33 100.0 34 ................................. CGTGATCGAGCTGACATGGCCAGAGCTACGGCAG 10012 33 100.0 34 ................................. CGATGCTTACCCCGCATCGTCAAGGCCCAGAGGC 9945 33 100.0 33 ................................. AGTCCATCCGCTATCGATGTCTGAAACGGTAAG 9879 33 100.0 33 ................................. GCTAAACTGCTTTGGGCTCAACGAATCATGTTC 9813 33 100.0 33 ................................. TCCGTCCTGGTAAATGACGATAGGCAGCTTGTT 9747 33 100.0 34 ................................. ACTCCGTTTCGTGGTTTGGCCTGCTGGTATGTTG 9680 33 100.0 34 ................................. CAGAGGAGGAAGGAGCATGAGTTGTGAAGAGTAT 9613 33 100.0 35 ................................. TTGTTTGGGCTCTACCTGCCAACCGATGACGGTAG 9545 33 100.0 33 ................................. AAAAACGGGTACGATTAGAGCGCCTGCTGTAGT 9479 33 100.0 34 ................................. GTCCTGCACATTTATGCCTTTCGCAAGGTGCATA 9412 33 97.0 34 ........................A........ ACGGATTGCCTCGACGATCCATGAGCGAGTAAAG 9345 33 100.0 34 ................................. CGCCAGCATTGCCATGAGTGTTGCAATATTGGCC 9278 33 97.0 33 .........T....................... ATATCGCCGTTGACGAGTTGGGTGCAGTGGAGT 9212 33 100.0 33 ................................. TTCGCAAACAGCGCAGGCTTTTGCAGCTTCGGA 9146 33 97.0 34 .............C................... TTTTTGCTTTGTCCAAAACACCACTTGCAGAAGT 9079 33 97.0 33 .............C................... AACCACGGTTGCGAATACTGTATTACCATGTTG 9013 33 93.9 34 .............C..............A.... TTGTCATCCCGGAATCGCTCAAACTGCGGGTGCC 8946 33 100.0 33 ................................. TCCACTCCCTTCAGGCTAAATTGGCACTTTATC 8880 33 93.9 33 ........T....C................... CGCCACGATCCCGTAAACGTCACCCGAGTAGAG 8814 33 97.0 34 .....................C........... GTCATCGAGTTGTAAGGATTCCCCCGCCTTTAAA 8747 33 90.9 0 .........T...C.............C..... | ========== ====== ====== ====== ================================= =================================== ================== 38 33 99.0 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : CCTCGGCAAAACGTTTGGCATCGAGCTGGATATGGGAACCGATGAAGCTGCTTCACCTGTCAGAGGGAGGGGAAAGCGTGAGGAATCGGGGCTTAATGAAGCTGACGGTGGTAATCGTTCAGGGGAGCCGGCTGCTGCAGATGAGGCTGTGAAGCCGCGCAGAGGACGCCCGCCGAAAAATAAGACAGTTGCCGAGCCGGAGAAGGAAGCAGACGCTGCTCCTAAACGAAGTCGGAGGCGTTTGTAAGCTGGTGTTGGTCAGGGGCTTTATTGACACGGCTGTTTAAATAGAAGCGATAATTATTTTTGCTTGCTTCTGGTGCGAATGTGAAGCTCACATAAAATCCCTGGGACATTCGCACCTCGAAATTTGTCGAAAACGATGCAATAGGAGTCATATGGTGGAAAGTCAATAAATGAGGTATACTTTTTTTGGATAAAACTTGTACGAGAATGAGCTGATTGATGCCTGTTAAGGATTAATTGGCATCATTTTCGCT # Right flank : CATCATTGGCTCTACAATAGGCGGCATGGCTGGGTCGCACTCCATAGCTGCGTAGATTGAAACGTCATAGACACCTCGGTTGCACCTTGAGCTACGGGTCGTTTTTCCTATGTGATGCATGTAGATAATTTGTGGAATAAAAATGAAAACAATTCAGGTCCTATGCTTTGAGCATCAGGACTTCTTTGCATTCAACAATTATCATTTTTAAATTTACTTACAAGAAGAAGGGAAAATGTAATTTGTAGAGAATTTCTTCCATATGAACTTTTTGTTTGTTTATCTCAAGTTTTGTCGATTTTATGAAACGAATATCCATGTTAATACAAATCAATTCACAATTTTATGCGGAGGTGAAACAAATGTCGGACAAGGATCATTTACCATTCATGGCCATGGGGGATTTTAAATCAATTCTTAATGCCTCTAAAGTGAAACAAGAGAAGATGACGGCTATATACGAAATTCATGTCGTTACACCCATGATCGGTGGTGGTGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 3 17945-17315 **** Predicted by CRISPRDetect 2.4 *** >NZ_STGF01000046.1 Paenibacillus sp. SY21-1 SY21-1_ctg0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 17944 33 100.0 33 ................................. CGTCGCTCTAGCACTAAAACATCGCTCACATAC 17878 33 100.0 34 ................................. GACAGATACGATGACTTGGCGTGAGAACGCGGTG 17811 33 100.0 33 ................................. AACCAATTACCATTATCGTCACAATACGTACAG 17745 33 100.0 34 ................................. TTTCCCGTTCCCTTCATCTCCCCAGGAGATTAGG 17678 33 100.0 33 ................................. CATGTATAGTTTATCGTGGCCGCAAGACTGCTC 17612 33 100.0 33 ................................. TCACCCGCCGCCAGTCCTTTGTGCCATTGCTTG 17546 33 100.0 34 ................................. AAATTAGTAAACTATGTGCTGCAGCGATTTGAGG 17479 33 97.0 33 ........T........................ ATCCCATACGACTACGCTGCCGTGCGCTTCGGC 17413 33 93.9 33 ........T.......G................ GATATTGCCATATTCCCAACTCCTATTCGACTT 17347 33 93.9 0 ........T.................G...... | ========== ====== ====== ====== ================================= ================================== ================== 10 33 98.5 33 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : GTACCGCTTCTTCTTTGAACGTTTTGTCGTATTGATTCATTGTCTCTCGTCCCCTCGTCTGCTTTCATTTTATTCCATACGAGGGTGTTTTTCGACTGCATCTTTATAGTAGCACTCCAGAGTGCGTGGATTGAAACCGTCGCTCTAGCACTAAAACATCGCTCACATA # Right flank : ACTTGACCATTAGGAAGTTGATTCACCGCTTCTTTGTCGCATTTCTGGAGTGCGTGAACCGAGACATATTGTTTCGTCGTATCGTCGAACTGCGACACAACTGGAGAAGGAGATTCCTAACGGGAGTATCTATGGTATGGTATAATATATAAATATATTTTATGAATACTAAAGCGTTATGAAAGGTGGACTAAACGAATGAAACACACAATTCAATTGATGGAAACCCATTTAAATATCGATGTTGGAAATCCACCCTTTTTGAAATTAGATAACGGGTTGCAAATTCCATATGCTTCGATTAAAGGGATATCAACAGGTAAACCCATACCAGATGCTTTCAAGCTTTATGGTTTTTCTTTTGGAGGAACAAGAAATGGATTATTTAGATTCAATGGAGGTTATCATCTCTACTTTTTTTCTAATGAGGTTAATACCCTTCATTTTGACTTGAATAATTTTCTGGTTGGTAAATTTAAAATATCAAAGTTAATCATTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //