Array 1 760417-758887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001974.1 Dickeya chrysanthemi NCPPB 402 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 760416 28 100.0 32 ............................ GGCGCGCAGCGTATGGCGTGCCATCCGGGTTT 760356 28 100.0 32 ............................ GACATTGAGCGTTATCTGTCTATCGACATCAA 760296 28 100.0 32 ............................ AGTGCGGGTTTCTTTTTGCCGGAGATTTTATG 760236 28 100.0 33 ............................ CCCAGATAACAAGGTGACAACCGATGATCCTCT 760175 28 100.0 32 ............................ GAGTATAAAAACCTCATTGATATCATCACGCA 760115 28 100.0 32 ............................ AGCAAGTATGCACGTCACAAACTGGCGAATGA 760055 28 100.0 32 ............................ GGTGAAACAGTCAGCGCCTTGTAATCGAGATC 759995 28 100.0 32 ............................ AGCGAGAGACTCTGCGGGCCGAAACACTACAA 759935 28 100.0 32 ............................ TGAACAAACGCGCACCCTTCAAGGCACTGAAT 759875 28 100.0 33 ............................ AAAATCTTTCGGGCAGACAGAAAAACTTTTGCC 759814 28 100.0 32 ............................ TGGGGTAATTCACCGAGATTGTATGACATTTA 759754 28 100.0 32 ............................ CCGCACTGCCTGTAGTGCCGGATGGATTGCAC 759694 28 100.0 32 ............................ GGAGCGTTGTTCCTGCTGTCAGATTGGCTATT 759634 28 100.0 32 ............................ AGCATTGAGCCGACATCCGTCGACGATAACGG 759574 28 100.0 32 ............................ ATGCCGTTGTCCAGCACGATAACGGCTTCACC 759514 28 100.0 32 ............................ AGACTCGGCGGGAACCCGCTCGACCCATGGCA 759454 28 100.0 32 ............................ TGAGTCAGTTTGGCGGCGGTTAAGGCGGCGGC 759394 28 100.0 32 ............................ GAAGTCACTGGAGTCTTTGCGGGTACCCGAAG 759334 28 100.0 32 ............................ CACTCGCGGCACTGGTAGGCTGGGTATTAAGG 759274 28 100.0 32 ............................ TGTCTCTAAAACTGTCACTAACCTTGACATGT 759214 28 100.0 32 ............................ GTCAATCCACCCCTGATAATTAGGCAGTAGTT 759154 28 100.0 32 ............................ GGTCGAGATTACCATGAGCACCAATATCTTAT 759094 28 100.0 32 ............................ TCTGAGTCTTGTTTATAATGACTATTCTTCTG 759034 28 100.0 32 ............................ ACCCTGGCCAACCCGATGAAACCGCAGTGGAA 758974 28 100.0 32 ............................ ACCATATCCAGCTGTGGTTGCATCGCGGAACT 758914 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGGGAAATACGGATACCCAAAATAATTCGAGTTGCAGGAAGGCGGCAACGCAGCGAATCCCCGGGAGCTTACCCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACACACCTGCAACTTGAAGTATGACGGGTATAATCTACTGGAAAGTAACGAGAATTAACCTATCACAGCCACAACGGGAAAGTGAATGGCGCCGAAAAGACTTTTCTTATTTTTATACCCTTTTTTTCAGCCGCTATTTTCGGCACTGAAAAATCAATCAGTTACCGACAGCCGAAAAAAAAGGGTCTGACGACGAAAATCGACAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACGGGCTACA # Right flank : AAGCAGATGCTCAACACGCCAGTGTGTTGCCGGTAACGCGAATTATTTAGGTTATGCCGACTGATTTAAATTAAAACAGGGTTTCTTTTTATTACTTCGACCACAAATTCTACCTCCTTGGTTGACACTATTTTAAACCTTGACTACTACTTAACTATTAAGGCTAGATTGACGTCCACCCTTAACGGAAAAAGAAATGAATTGCACATTTTGTGCAACCAGAAATGGTCATCACCGGTAGCTATAACTAAATGCGAATAAAAAAACTGATACAAATAAATCTTTTGCATTTAATCCTATTCATTTCTCTTGCCAGTATGTTTGTTACGCTATTGAATAGCTATTTAACTTTTTATCACGTTCAAAAAAAACTACTGTTTGAACAAGCCACTAAAGTCAATGCCAGTTATTCAGCCAAACTCGCCATGACTGTGGATAATTTTTTTTCTGTTTCAGAAGAGCAATTATCTTATAGCGCCAGGTTGATCGTCAGTCATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 769121-770108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001974.1 Dickeya chrysanthemi NCPPB 402 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 769121 28 100.0 32 ............................ TGTGCGCAGCGCAGTGAAAACGCTCATACCGG 769181 28 100.0 32 ............................ TGATCGGCCTGCGACCGCAATCAATGAAATGC 769241 28 100.0 32 ............................ CGGTTGGCGCACATCCTGAAATGATTACTGGA 769301 28 100.0 32 ............................ TGGGAAATGAACTGAGTGAACAGGTTACCCAG 769361 28 100.0 32 ............................ GCCTGGCAGGCGTACGAAGTTCCAGACTGTGC 769421 28 100.0 32 ............................ TATCTCAGCGCCAGCGATGGCGCCTAACGGGC 769481 28 100.0 32 ............................ TCCAGCACGAAAGCTGATTGTGAATTCTAGCT 769541 28 100.0 32 ............................ CGTTACTATTGTCAGATGTCCCGTACCCCAGC 769601 28 100.0 32 ............................ TTCGCTTCGAGCCTGATTTATTGCTGCTGTAA 769661 28 100.0 32 ............................ AGCTCTTCGTCATACACCGGAACATCGCCGAC 769721 28 96.4 32 ...........A................ GCGCGTCTATCCGCGCCGCTGGTCGTAATGGT 769781 28 96.4 32 ...........A................ CGCTACACGATGATGCCATGGATCACGAACTG 769841 28 96.4 32 ...........A................ AAAACGTTCCCAGAAATGACTGTCTATCCATG 769901 28 96.4 32 ...........A................ TATTCAAACACCGGTATTGCTGCTGACCAGAA 769961 28 96.4 32 ...........A................ CAAGGCATCTACGCGAACACGAATGTTTCCAT 770021 28 96.4 31 ............A............... TTACGCGGAGAGCTGGTCGTAGCACCGCCGG 770080 27 78.6 0 A...........AC.........-..CG | GG [770100] ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.5 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGCGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGAGAAACCAGTCGCCGGGGTGTTCTCCAGCTACGGCTTAAGCGCCATCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGGAAAACGGCTATTTCTCTTTAACAATCAGGTGATAAGCGATTATTCGCTACA # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGAACCACCGCCCTCTCATACATTCGACAAACGTATTTGTCAGCCATACCCCGGCTGTGTGTCAACAGCCTTATTCCCGCGCAGGAATAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 775725-775097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001974.1 Dickeya chrysanthemi NCPPB 402 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 775724 28 100.0 32 ............................ ATATTCGTCAGTCAATTATCGACATCCTGACC 775664 28 100.0 32 ............................ GACAATCTGATAACGGCGCACCTCTCCACCGC 775604 28 100.0 32 ............................ ATCTGATTCCGCCGACGCACTGGTGACGGTTT 775544 28 100.0 32 ............................ ACGGTGATGTAGATCGGATTCGGCGCATCATC 775484 28 100.0 32 ............................ TGACCAGTGCCGAGCAGGAACGCCTGGAGACG 775424 28 100.0 32 ............................ AATTGACCATCGCGCAAGCGGTAACGGATTCG 775364 28 100.0 32 ............................ ATGCTGACGTTTGGGGGCAGGTTGCTGAGTCG 775304 28 100.0 32 ............................ GGGGTGTGGACTATCGGATATGGTTGGACGCA 775244 28 100.0 32 ............................ TCGCCTACTTCAAGAAGCGCATTCATTTCGAT 775184 28 100.0 32 ............................ TTGGAACCGTTAAGTATCAGGAGTTCTGGGTG 775124 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCCATCAGCGCGCAGCGACGTGTAAGGCTTGTAATCGCCGGTGGTACACACTTTCAGCACGCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTACACGCCTGTCTGACAAAAACGCCACTGTAGCACGCCGTTTCCACCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGACTTAAAAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : AGGGTGTCGGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGATACGCGATTGCCTATCCCGCACGAAACCGCTCACCGCCCCAACATAAATCAGGCCGCAGCAAAATCCTTGCTGTTTGCCAACAGCCCGAAAACACTATTCCGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGATGGCATAACCCGCGCCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAGCCCAGGCTTTTGAAGCGGGTTTCCTGATGCGCACGCTGCTTCGCCTGACGGAATTTCAAATGGGTAATGCTGATCATCGCCCAGTTGATCACCAGTGCAGACACCACCAACGCCATCAACAGTTCAAACGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1589261-1587647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001974.1 Dickeya chrysanthemi NCPPB 402 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1589260 32 100.0 33 ................................ CCTGATAATCAGCAGAACACGCCGTCTAACGGT 1589195 32 100.0 34 ................................ ATCAGCGGCGGTCTGCGTTGTCGGCTCATAACCT 1589129 32 100.0 33 ................................ TTGTCGATACTGGCCGCGAGCCCGTAAGTGGTA 1589064 32 100.0 34 ................................ GGCATCGCTCCGGCGCAGCGCTGCAAGTGTTGAA 1588998 32 100.0 34 ................................ GGCATCGCTCCGGCGCAGCGCTGCAAGTGTTGAA 1588932 32 100.0 35 ................................ ATTAATTCAGGGTTGTTGATTGGCAAATTGCACAT 1588865 32 96.9 34 A............................... TTTGAATATCGGAGATATCCAGCGCTGGATCGAC 1588799 32 100.0 34 ................................ GCTATTGTTGAAGGTCGCCTGAACCTGACTGTCA 1588733 32 100.0 33 ................................ AAGTGTCATAATTGCCAACAGATGAATGGCTGG 1588668 32 100.0 32 ................................ TCAAAGGCGGTATGGTAGTCCACCCATTTACC 1588604 32 100.0 35 ................................ AAACTCCAATACAACTGTGTGTACGGATACCGAAT 1588537 32 100.0 33 ................................ ACGAAAGTCAGCTGCTCCCAGCGCTGTATTAAG 1588472 32 100.0 33 ................................ ATTTAGAAGCAAAGCAGCTGGATTGCCTGATTT 1588407 32 100.0 34 ................................ TGGTCCTTACCGGCATCAGCCGGCTTCTCTGGTT 1588341 32 100.0 34 ................................ TGTCCAAGCGCGGTTGTCCCGCTCGCACGGGTGG 1588275 32 96.9 35 ............A................... CGGTCTGTTTGATGATCAGCGGGCGATAACGAGTA 1588208 32 100.0 34 ................................ ATTGAACGCGTCCGTGAAAAAGACAAGTTGCAGC 1588142 32 100.0 34 ................................ TTGTGTAAACCTCTTGATTTGGGCACTTTTGATG 1588076 32 100.0 34 ................................ TTTTTCAACGGCAGCGCCCGGCGCATTGAGTTCA 1588010 32 100.0 34 ................................ GAGGTAAATAGCATAATAGACCCATTTGCAGGTA 1587944 32 100.0 34 ................................ ACCAGCACCTGCAGGATCACGCGTAACTTTTGGC 1587878 32 100.0 33 ................................ AGCGTAATTGCTGCGCCCTCGCTTGTATAAATC 1587813 32 100.0 35 ................................ TTTTCGCGCGTCAGCAGATGCAGCGTTGAACCCAG 1587746 32 96.9 37 .............T.................. ATGACGTTGTCAGACTCTGGAGATGTGAATATCAGCC 1587677 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 98.9 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGATACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAAGACGCCAACGGCCCCCGTCGCCTACGGCAACTGGCCAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTATTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGTGATACGCTTATCGTGTAACACTGCGCCAACCTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAATCTTATGCGGTTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCCGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATGCTGATTCGTCGGTTAACGCGGCGACGGCGGTTCCGGTTCGAACAGCGGCAACGGTTTGCCGATGATATAACGGCGGCGCAAATGGGCGGATAACGCGTCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCATAACCGCATGTTCTCGGCATACACCAGCCCGATGCCGCCCGCGCCGACAAACCCCAGCACCGCGGCTGAGCGCACGTTCGACTCCATTTGGTACAGGCTGAGCGCCAGAAAGGTCGGGAATGATTGGGTGAAGATGCCGAAACGGTGTTTTTGCAGGCTGTTGGCGCCGACGGCGCTCAGCCCCCGGCTGGGTGAGCGTTCCACCGCTTCGTGCCCTTCGGCGTATAGCTTGCCGAGCAGGCCGGCATCCTGCATTAGAATCGCCAGCGCGCCGGACAACGGCCCCATACCCACCGCCCGCACGAAGATTAACCCCCATATCGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //