Array 1 75910-75637 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVA01000003.1 Desulfovibrio longus DSM 6739 G452DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75909 29 100.0 32 ............................. GGGACGTGTGAGGGATGCGGCGAGACCAAGAC 75848 29 100.0 32 ............................. CTGCACAAGGTCTTCGTGGCCAGGATGGCGTC 75787 29 100.0 32 ............................. GCGCAATAGGCAATGCCGTCCTGCTAGCGCAT 75726 29 96.6 32 ............................T GAGCCGCGCGAGCGGACTACTGTGCGTGCTGC 75665 29 89.7 0 ..........................GTC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGTTCCCCGCGTGCGCGGGGATGAACCG # Left flank : | # Right flank : GCCAGCGTTCTCAATAAAGCGAAGATCAAAAGCATTCGCCCGATTCATGGGTGGATGAATCTTTGGAGTAGCAGGATGAGCTTGAGAATTTTTGGATCCGTTTGGTACCATAAGCCCTTTCATCCATGATGGCTTGCCTGCGGCCCCAGCCATTTCAGCATGCTTTCAGTGCCATTCGTGGTATTTTGACATGCTGAGATCTCGCAGGTGAGCGAATTCTCGGCTTAATCGTTATGATCTGTCACGCTGAAGGCTAAAAGGGTAATCATGGATTGCGTGTACGTGATGTATCCGCTTTTCCCACGACGCCATGCAAAATCAAAGACATTCCGCGTTTTATGCACATAATGCGACAGGGCGCTTTGAATGTCTTTGCGGCGAATAAGTCATTTTTTATCAGTTGGTTATGGTGTGTCTCGGATTGGCTGCTTCCAAGCATGGCATTCAAGAGGTCGTGGGTTCGATTCCCTCCAGCTCCACCAGAGAATAGTAAAGGCTTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 364054-365241 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATVA01000015.1 Desulfovibrio longus DSM 6739 G452DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 364054 37 100.0 38 ..................................... TAGGCGTAGATTTTGTTGTTGAATTTCTGGATTTGCTT 364129 37 100.0 38 ..................................... TCGGCAACCTCGACCAGTCCCATCACGTCGTCCAACGT 364204 37 100.0 42 ..................................... TTTTGTTAAGCGAGTTAAGCACACTTGACGCGCTCACCAATG 364283 37 100.0 40 ..................................... CGGCTTGCCCGCCTTGACCCCAAAAAGGCGCTGGTTAAGG 364360 37 100.0 41 ..................................... CGTTGAGAGTCGGAGGTGTAGCCCCCTCGTCAACAAGCCCA 364438 37 100.0 39 ..................................... GACTACGAAAAAATACGCGCCTGGTTCCCGATGGTGGAG 364514 37 100.0 37 ..................................... CCAGCTTCTCGGTCTGCTTGCGAATCGCCGCGAGCGT 364588 37 100.0 41 ..................................... GCCGTGTGGTCATAGCTGACCTCGGCGGCAGTGGGCAGCTG 364666 37 100.0 37 ..................................... ACGTGTGGCGGGCGGTAGCCGTAGGGGATTGCGCCGA 364740 37 100.0 37 ..................................... GCGATATTGCGCGCTGCGGGCCGCACGCTGGGCCTGG 364814 37 100.0 40 ..................................... GCCTGAACATCGGCCTTGCTGGACTTGTTGAGGACAAAGG 364891 37 97.3 42 .................................T... GCCAGTACATGAGACGCACTTACCAACGCCTGAAATTCTCTG 364970 37 100.0 44 ..................................... GCTCCTTTTTGCGTTTTGTTGATGCTGGTTCTAGTATAAAACTA 365051 37 100.0 40 ..................................... CTGGACCATCTCGAACCGCGCCCGCTTATCCGTTACGCCC 365128 37 100.0 39 ..................................... GCTTGTTGAGCTTTTCCTTGATAGCCTTTTCGTCGAAAG 365204 37 94.6 0 T...............................T.... | A [365237] ========== ====== ====== ====== ===================================== ============================================ ================== 16 37 99.5 40 ATTACACTGCATGACCCGCTAGAAAGGGGATTGCGAC # Left flank : AATGTTGCGGTACGTCATCTGCTATGACATTCCTGACGACAAGCGTCGGACAAAAGTGGCCAAATGCCTGGACGGCTACGGTGACCGCATCCAGTTCAGCGTTTTCGAGGCGCTGCTCACCCATACGCTCATTGAAAAACTCATAGGGAAACTTACGGACATGATCGACGAAAAGGAAGACAGCGTCCGCATCTACGCCTTGTGCGCTAATTGTGCGGGCAAGGTTCACAAGCTTGGGGTCACTGACCCGGGGCCGGAGATAGGTGAGGAGACCGTCTTTATCGTTTGAAATGGATTCCAGTCGGCACCCTGTTTTCGTAACTGCAGAAACCCTCCCAAAGGAGGTCCGGTTACGGCATCTGGCATGTCAATAAATCTGAAGGGTTGTCGCCTTCACACTGCATTCCACCGAGCTTGTTCAATCGCGATGCCCTTTGCCTTGTGCCTATTACGAAACCATAACCTCGTGCCTTTGGGAACAGCCATCTTCTGGAATAGGG # Right flank : CTTTTCCTGAACCTTATAAGAATGAGACAACCCTCTCGAACAGAACCGGGGAGCACGGTACCATCGAATGTTAATTGCTCGGCAAGGACACCATGTAATGACCAGCCCAGCTCGCGCATAAAGGAGGCATGTATGGCAAACGGTGGCAAGACGCTTTTTTTGACCGTGGGGACCGGCACTGCAGAGATCCTACGTGAATCAATGCTCGTCCCGCTCCGCAAGTCCATTCTCCACGGGACATGGGAGGAAGTGGTCCTGCTGCCATCGCAAAAGACCACCGACTCCGCCAAACTGCTCTGCGAAGAGCTGCAAGGCATACGGCTTGTTGTGTCCCCCCTGCCCAGGCCTGGACAGGAGGACAACGCGGACCAGACCTATGCCCATTTCGAGTCCGTAATTGCCGAGCGGATTGCCTCCGGAGTGCCCCCAGGACAGATGGTCGCGGACTTCACACGTGGGACAAAGGCCATGAGCGCTGCCTTGGTCCTCGCTGCTGCCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACACTGCATGACCCGCTAGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //