Array 1 212-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKA01000297.1 Salmonella enterica strain BCW_5229 NODE_297_length_244_cov_1.11864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211 29 100.0 32 ............................. ACCCTGGTCAGTCCGATCACGGGGTTAAGCTC 150 29 100.0 32 ............................. CATCGCCTTGCACTGGGTAAGAGGCCCGTCAG 89 29 100.0 32 ............................. GCATTTATCGCAGTAAAATTCTTCTCGCCTGT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATTTTCTATCTCAACGGGCAACTCACCGATC # Right flank : C # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 256-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKA01000041.1 Salmonella enterica strain BCW_5229 NODE_41_length_34058_cov_4.09117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255 29 100.0 32 ............................. TAGAGTTTGGTTCTGTTAGTCTCGGGGCTAAA 194 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 133 29 100.0 32 ............................. TGATTGCAGTTGCTTTTCCAGTTCGTCAAATC 72 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGACAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GATTTTCTATCTCAACGGGCAACTCACCGATCAGTGAGATCGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18188-16512 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKA01000041.1 Salmonella enterica strain BCW_5229 NODE_41_length_34058_cov_4.09117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18187 29 100.0 32 ............................. CGGCAACAGTAGCCACTCAGGGTGGATGGTAC 18126 29 100.0 32 ............................. TGCTACTGCTATCTGTAAAATAGCGCTTAAAT 18065 29 100.0 32 ............................. GGGCGGTAACAGAATGAGCAAACCCACAATAG 18004 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 17943 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 17882 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 17821 29 100.0 32 ............................. GGGGAATGGTCGGTAATTTTGACGGACGGTGA 17760 29 100.0 32 ............................. CCACTGTCGGTGTTGATCGCGCCGATATTGAG 17699 29 100.0 33 ............................. TGCTGGCCGCTCGACGGCCGGGCCACGGCGTGC 17637 29 100.0 32 ............................. TAAATCATACCGGTACGATAGAGTCATATGAG 17576 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 17515 29 100.0 32 ............................. TCGAACAGCGACTCCGACCAACCACTGCCGGA 17454 29 100.0 32 ............................. CGCACTCGGTTTACTCACCACACCCGCGATTG 17393 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 17332 29 100.0 32 ............................. AGAAACCGCTTCGTCTTTGCCCGACTCGCTTT 17271 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 17210 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 17149 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 17088 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 17027 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 16966 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 16905 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 16844 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 16783 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 16722 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 16661 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16600 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 16539 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-1486 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKA01000120.1 Salmonella enterica strain BCW_5229 NODE_120_length_13597_cov_3.88182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53 29 100.0 32 ............................. TATATAGTGCAAATTTTGCGAATTACGCACTG 114 29 100.0 32 ............................. CAGGTCGATTGGACGATCGATAAAATCATTCA 175 29 100.0 32 ............................. GGTTAGACTTGACGATCCCCGCGTAATAACGG 236 29 100.0 32 ............................. CAATCAAGACCTAGACAACCTTGATTATACGG 297 29 100.0 32 ............................. CAGGAGGCTCAATGAACGATATCACCGTACTG 358 29 100.0 32 ............................. TTTCCAGACCATTGATTGCGGGACACCGCACA 419 29 100.0 32 ............................. TGCTTCCGTCGTATCCCACTGGCAGGTTAGCT 480 29 100.0 32 ............................. TCCGCGCCTGGCCCTGGTTATTGCCACTTTCC 541 29 100.0 32 ............................. GCCGAACGTCCAATATATTGGGGTAGCAAAAA 602 29 100.0 32 ............................. CTTAGTGTATCGGCTACAGCCCAAGCTATGCG 663 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCATCTGCGACCTC 724 29 100.0 32 ............................. ACTGAAACTACAGGCAGGGTAGCGCCGATTTC 785 29 100.0 33 ............................. TTGAACAGCAAGGAGGAGGCAGTGAAGCAAGGC 847 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 908 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 969 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1030 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1091 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1152 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1213 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1274 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1335 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1396 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1457 29 93.1 0 A...........T................ | A [1483] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGCGCCAGAAATCTCTTCAGGGTGAAAACTATCTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACTATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //