Array 1 647610-646481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXK010000001.1 Listeria marthii strain FSL L7-0349 NODE_1_length_912819_cov_68.615011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 647609 29 100.0 34 ............................. ATTGTACATTGGTATCTTCTTTTAAATTACTATC 647546 29 100.0 37 ............................. GTGGTAAACAATGACACTTGAAATGTTTTTATGTTGC 647480 29 100.0 36 ............................. GATAAGACCTTTTAGAATGCCCGCTTCGTCAACAAG 647415 29 100.0 34 ............................. CCCGAATATCTCATTTTAGGGTTAATGGTTTATT 647352 29 100.0 34 ............................. AATTTAAAAAAAGAAGTAAAGCAGGAGGTACTTT 647289 29 100.0 37 ............................. AAGGTTTTTCTAAGCGTGTGAGTGCCTAGAGCTGGCA 647223 29 100.0 35 ............................. ATTGATATCAATGAAGATGATTTGCCATTTTGAGG 647159 29 100.0 36 ............................. ACTTTTGAAAAAGAATGAAATAACGTGAAAAAGATA 647094 29 100.0 35 ............................. AAACATTTGATCGCGTTGTTAAAAAGAAAAAATGG 647030 29 100.0 36 ............................. AAATGGGACCAACGTGCAAAAGTAGATAAGCTAGAA 646965 29 100.0 37 ............................. CGCGGAGCAATTCTTAAATACGAGGGCGGCGGATACG 646899 29 100.0 35 ............................. TCGTCCAAACTAGAAAAGTTCATTAATCCATTTGC 646835 29 100.0 38 ............................. TTCACTAATCCGAACCAAACATATTTTCCGGAATCCAA 646768 29 100.0 35 ............................. TAATACTCTTCCAACATTGTTTCCCTGTTGGTCTC 646704 29 100.0 36 ............................. TAACAAAAACCCACCCCAATAATATGGAGTAGGTTC 646639 29 100.0 36 ............................. GCCGAATTTAGAACGTGCGGAAAAAATGCAGCAAAC 646574 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 646510 29 86.2 0 ...............C......CC....C | A [646485] ========== ====== ====== ====== ============================= ====================================== ================== 18 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAATTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAAATTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGACTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAGTCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCACAAGGAGTTCCTTCTCGACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAATATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGGAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 664461-663852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXK010000001.1 Listeria marthii strain FSL L7-0349 NODE_1_length_912819_cov_68.615011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 664460 29 100.0 34 ............................. CTTTTATATCGCAAAGGCTTAAAGTCTTCATTAA 664397 29 100.0 36 ............................. GCCATTCCGGTCGTTCCTTCTTCGATACCTTTTGTC 664332 29 96.6 35 ..........T.................. CCTGACCGCGTAGTACCGATAATACAATTATTAGT 664268 29 96.6 37 ..........T.................. CATATCCATCACGGTAGTTCTCTAAACGTGTCCATCC 664202 29 96.6 34 ..........T.................. AATTGTAAATATCATCCAGATAATCATTCATGTC 664139 29 100.0 36 ............................. ACAGCTTGGAAGAATAAAAAAACAGCTTCAGGGTGG 664074 29 100.0 35 ............................. TACAATATGTAAGGGAAGGTTGAGGAGGCTATGAA 664010 29 96.6 35 T............................ TGTTGTGAATTTGCTTTTCGGTCAAGTTCATCTGC 663946 29 93.1 37 T........................G... TTCGATGGCTTTAACGCACGTTTGCATAAAGGCGAAA 663880 29 93.1 0 .......T......T.............. | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.3 36 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCTGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGACGTATCTTAGGCCGCGCAATTGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGCTTGGGTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGAGGAGTTTGATGGTTTTTGTTTTTGAAAACCATGTAGAGAAGGGTGGATTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GATTTCCATTTCCTACACAAAAAAGCCATCCAACAGGATTTAGGCTTATTTTTTATCCCCCTCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAACCATGGTACTTA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : TTTTAGATATTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //