Array 1 30419-32095 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000001.1 Levilactobacillus acidifarinae DSM 19394 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30419 29 100.0 32 ............................. ACGGTGAGAAGCTTTCATTTGGTAATCTGCTG 30480 29 100.0 32 ............................. CATCTCCTCAATGTTTCTATTATACCACAATA 30541 29 100.0 32 ............................. TGTTCGCCGTGACAGTTGCCCCCTAGGCTTTT 30602 29 96.6 32 ............................T GACTTCCCAATTGCGCGGGTTCTCCTCGTCGT 30663 29 100.0 32 ............................. TTGCACCGACTGAGCTTGCGGCTGATTTTATA 30724 29 100.0 32 ............................. TATGAACGAGTTGCCAAGGCATTCAAGGCACT 30785 29 100.0 32 ............................. GACATTGGCCCGTTAATTCAGCGCCTTAACCG 30846 29 96.6 32 ............................T CAGGCGTATTCTATTAGTATCGAGACAAGTAA 30907 29 96.6 32 C............................ GTCAACGGCAACTATCTAAACGCCCTCACGAT 30968 29 100.0 32 ............................. TATGGGCGGCTGGCGAAGGCCTGGTCTACGAG 31029 29 100.0 32 ............................. AATCCTAAAATGATTACCACTACGAATAATCT 31090 29 96.6 32 ............................T TGTGGTCGGCACGGCTATATCTATAGTTTAAT 31151 29 100.0 32 ............................. AAAGATGTCGCCGGGTACATTGTGGCTACAGC 31212 29 96.6 32 ............................T CAAGGAATTAACCGAGCTTAACTTTGAGGGGT 31273 29 96.6 32 ............................T AAGTTTGAAAACGTTTGGAACTTTTCCAAAAA 31334 29 100.0 32 ............................. AGGTTATGGATAATTTTACCCCGGACGAGTTT 31395 29 96.6 32 ............................T GGTAATAAACTGTGGCAAACAGAGGGTGGTGA 31456 29 96.6 32 ............................T ACGGCCCTTAGAAGCGAACTGAGCTGGATTAG 31517 29 100.0 32 ............................. TTCAAAAATATCAGCTAATTTGGAAAGTTCAT 31578 29 100.0 32 ............................. TGGGTTATCCACTGTGGCTCTTTAGACGTTCA 31639 29 96.6 32 ............................T ACACGCATGGACAGAATGGTCGCTAAGGGTAA 31700 29 100.0 32 ............................. ATGTAAGACGATGTACAAGCGATGTGGACCGA 31761 29 100.0 32 ............................. TGGGCGGGGTTATCAGCTAATCGTGTTAATGC 31822 29 96.6 33 ............................T CATCGGGAACTAGTGCAAGCTCCCCGGACGGAA 31884 29 96.6 32 ............................T GTTAACATCGTTTGAATCGGTTATTTGCATGT 31945 29 96.6 32 ............................T CAACATTGATTAACGCGTCAAACCATTTCATG 32006 29 100.0 32 ............................. ATGTTCGGTGTCCTTTGCAGTTTCACCGGAAA 32067 29 93.1 0 .....................A......T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.3 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : AGTCCATTGTGATGGCTTCCTTTCATGAACGAGAAAAATTTAGTTATCGTAGCGTGTACTTTACCTTGGAAGGCCAAGAGGAGGATACTGACCGACCTGGGTTGAACCGAATCTTAGTATCGGTCCATTACGATACCGACGAGACGCGGCAGGCCAGTCATGACTTCATGGAGTTCGCTGAGGGGACCTGTCCGGTAATGGACAACCTGACCAATGCCGTGCCAATTACCCGCATGGAAGTAACCACAGAGACATCCAACCAAGAAACCATTAAAAGCTAGAAAATGTGTTAAAAATGCCGTTTGGTCGTCTTGATCAGCGGCATTTTTGATGGGATCAGCTTGGAGGGGGGAGCTTGACTAGAGACTAAAGTCATAACTAAGTTTATAGGAGGTGTAAGTTGTGATGGAAAGCTGAGTTATGTAGAATTAAAAATGTAAGTTAATGAAAAACGGGTGTTTTAGAATCTATGGACGCTGCTACAACGGGATTTGTTTAGT # Right flank : TTTTTTCTACATCGAATCGATTGCTCTGCCGGCGTGTTCCCCGTATGTAAAAATGGTCCATTTTAGAGGTTCTGGCACCACTGTTAAAGGTGGTGCCAGAATCTCTTTTTGGTTTGATCAAAACGTAGAAACGTTACGGATGGTTAATCAAAAGCAACCGCAATAAAAAAACTTTTTAAAAAATAAACTAACCCCAATCACTTTTTTACCTGGCAATTGGTGCTGCAAATTTCCCGTTAAGAATCCCGCACCATCAACGCTTATCGTGTGCAGGTAAACCGATAAACGTATGTAAAGAAGCTGTGAATTTATCCACAATTAGGTTCTGATTTGAACAGAATTTCAAGAAAGCGCTTTACAAACGTGCAAAAATTAGGTATATTATTGGTGACAAATGAAAGGGGTTTCATACTAATGACATTAACCACTGAACAACTCGCAAAATACATTGACCACACTAACTTGAAGGCAGACGCTACCGAAGCTTCCATTCGCCAAAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81771-80339 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000003.1 Levilactobacillus acidifarinae DSM 19394 NODE_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81770 29 100.0 32 ............................. GCCTTGCTCGATTTCGTCATTCACTCATATCA 81709 29 96.6 32 ............................C TTTAAATTGGTAAGGATTCAAATTCTGGGTAC 81648 29 100.0 32 ............................. TACGTGACGACCAGCCTTTCGACGACGGGTAA 81587 29 96.6 32 ............................C GTCATCAAAGGGTATCAAGGTAAGCATTGCGA 81526 29 100.0 32 ............................. ATCGATAGTGGGAAGTTAACTATTAATTGGTA 81465 29 96.6 32 ............................C TGAAGGAAATTTAAAACCCACATTCTATAGGC 81404 29 100.0 32 ............................. GGATACATTAATCGGCTGCGGTTGCCAGAAAA 81343 29 96.6 32 ............................C GCCTAGACCCAGCCAGCAGCTAACTGACCGGG 81282 29 100.0 32 ............................. CACGGAGGACAAGCACGGTAAAATTACCACGG 81221 29 96.6 32 ............................C TCGGTGTTGTACTGGGCGTTAAAGGAGTTATC 81160 29 100.0 32 ............................. TACAGCGGTTAACTTGCCAAGTGGTGTAACCA 81099 29 100.0 32 ............................. CATGAGCGAAGCGGACAAGGCCGCTGCCTTAA 81038 29 96.6 32 ............................C TTACCCTTGTAGCTCAGCTCACGCTTGAATTC 80977 29 100.0 32 ............................. ACGGGGCACGACGTCATCGACGTTGACCCGGA 80916 29 96.6 32 ............................C TTGATGAGACTAACGACCTGGATTTCAACCCG 80855 29 96.6 32 ............................C TAGCTCGCCTTGATGGGGATGAACTGGTGACA 80794 29 100.0 32 ............................. GGCAACGGTGATTTTAAGGGGTTTGTTACGGG 80733 29 100.0 32 ............................. AAAATCATAGATGGATCGTTCTACTGTCAACA 80672 29 100.0 32 ............................. CTCCGTCAATCACCCCGGCGTTAAATTGAACA 80611 29 100.0 32 ............................. AACAACATCAAGATTGAGAACGGTGGAGACAG 80550 29 96.6 32 ............................C AAGGGGACACAATCATTACAATTACTGATAAG 80489 29 96.6 32 ............................C GTTGATTTAACGGGATTCTTCTTTTTTTAAAA 80428 29 96.6 32 ............................C TCCCTTTCCACGGTCTGCGCATCGAGATCCTG 80367 29 75.9 0 ....................CA.A.AAAA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.4 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : AACGCCGCGTACTGGCTGCACTCCGAAGATACGGACCGGCTTCATGCCGAAAGCAATCTGATTGAGCGTCAGACGGCTAAGGCGGCCATCAAGACGTTGTCGCAGTATCTGTCACGAACGGACGTGGACGAAACGCAGTTCGATAACCAGGCGATTTACCACCTGATTGTGCATTACCGCAACCGGATTGAGCGCGCCAAGGCGGCCGCGGCACCGTCACACGAAGAAGAGTACCAACACCAATTTAACAAGTTACGGGTTCGGGCATTAAGTGCCGAACGGGCCGGGATTCAAAACTTGTTAGAAGCGGGTAACATTTCCTGGGCCATGGCATCGCGCCTGCGGCAATACGTGAACTACGCGGAAAACGTGTTGGTCATGTCGTTGAGCAGTGAAGATGACGGGGACTAAGGAATACTAGTGCCTCTGACTTAAGTCAAGTTCATGTAAAAACGAAATTTATGAAATTCTAAATGCTGCTAGACCGGGATTTGTTTAGT # Right flank : TAGCAGCACAAAAGCGGCCGCCAGTGGAGTTTTCCACTGACGGCCGCTTGGTATTTATTGGTTAATAACTAGGTTTTTGAGCCGTCATAATCAGATGCAAAATCCAGTAACAGAAGAGCTGGATAAACGTCATCAAAATCACAAATATCCATAAATCATTAGTCCACATGTTCATTAAGGGCCTGATGAATTGCTCCGGATTTAAGAATAAATAGATGGTATGGATCCGGAGGAAGCGCCCGATGTAAACCCCGACCGACGATAGGAAGGTCAACGTTAAAACGACAATTAATCGGACGATGTTATTGCCTCGAGCCAGTCGTTCCGAGATACTTTGACTGACGAAGTTGAGGCTCCAGAACCCCAGAAATGCACAGAATAGGGCGCTGGTGATCAGGTAAGTGAAGTAGATCCAGATGTGGGGCGTCACCCGCAATAGACCACTGACCGCGTAAGGCTGAAGCAGTGACAGGTGAAAGAGGTCGGTCAGTAGGTAGGGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77965-78848 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000023.1 Levilactobacillus acidifarinae DSM 19394 NODE_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77965 29 100.0 32 ............................. CACGGGCATCCCCTTTCAGGCACCGCCAGCAC 78026 29 100.0 32 ............................. TTATCGACTTGCCTAGTGTCCACTACTTGAAG 78087 29 100.0 32 ............................. CGCGTACCCGTCCGGCGTGCCGCTAGTTTTGG 78148 29 100.0 32 ............................. GAGAGCCTAGACGGGTTCGACCCCTTTAGTAA 78209 29 100.0 32 ............................. TGGGGCACCTTAAGGGGATGCCCTTTTTTAGT 78270 29 93.1 32 .............A..............T AGTGCTCGGTGGCGTAGACCACGGCCCCCTGG 78331 29 100.0 32 ............................. AGCTATTCAAGACCAAGTACAAGCGAGTCGGG 78392 29 100.0 32 ............................. CAAATCCAAAAGGTTAGGGAGCTACGTGGCCT 78453 29 100.0 32 ............................. TAGCGTGACAAAATAGGGAGTGACAAAAATTG 78514 29 100.0 32 ............................. GCTCACCCGGCCCGTTTCCGTGAACGTTTTGT 78575 29 100.0 33 ............................. ATGACGTTCACGACGGGTTGGTCGCGTTTCACG 78637 29 100.0 32 ............................. ATTTAACACCGTTTTGATTGTCATATCTATAA 78698 29 96.6 32 ............................T TACGCTGTCTTACATTAACCCTCGTTACCTCA 78759 29 100.0 32 ............................. GTGCCTAAATCCTTTTCTTCCATGCTTGTCTT 78820 29 82.8 0 .......T..........A..A.A....T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : TTATTCTCGGCTTTTTCGTTGCCTTCCTGCCGCGGTTTATCCCGCTGATGCTGTTTACCAAGCGAGAAATTCCGGAGTGGTTTAACGAATGGATGAAGTTTGTCCCCGTGTCGCTTTTCACGGCTCTGGTGGTCAAAGATGTGTTTATTGATAGTAAGAGTTACCAGCTGATGTTCACGCAGGTGCCAGAAATGTTGGCCGCGGTGATCGTCATCATCATCGCGTATCGGACGCGTTCGATGGCAATTTCTGTGATTACGGGACTGATTGGCGTGTTCCTGCTGTCGATGGTAATCTGAATAAAATAAATCTAGTAAATCGTTAAATGGTGGGGCCACCCAAGAAGGGTGACCCTGTTTTTTTATAAAAATATTAGTTAATAGGATGTATCTAATTATTGTTGAGTGAAAGCCTCTTAATAGGTATAATAAGAAAAACAAGTTAATGTAAAACGGTAATTAGTGAGATTAAGAATGCTGATCTGTCGGGATTTGTTTAGT # Right flank : TTCGAGGGGGTAGTTATCACGATTGCACTAGCCGAGATCATCATCGGTCTATGCCTGCTGTACATGGCGTTTTCCGTACTGACCGGTCACTAAAAAGACTCACCCACTACGCTGATCAGACGTAGTGGGTGAGCCTTTTTATGGCGTTACGGTCCGCGGCCGCAACCATTGAAGCAAGTTAGTCAGTTACTTTATCCGTTTCAGCGTACATGTAGTCTCGCGTCATCGGTAACATCCGGGCAGAAGGGCCCTTGGAAATCAAGTATTGAATCACATCGATGTTCCCAGACTTGAAGGATGCCGCGCAGGCCTGTAAGTACAGGTCCCACATGCGGACAAACTTGTCGTCGAACATCTTAGTGACTTCTTCACGGTGTTGGTTGAAGTTTTGATCCCAAATTTCCACCGTCTTTTGGTAGTGGCGGCGCAGGGGTTCCATGTCATCGATTTGTAAGCCGTTTTCGATGATGTGGGTCGTGTTTTCCACCAGGCCAGGTACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 51519-50695 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000026.1 Levilactobacillus acidifarinae DSM 19394 NODE_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51518 29 96.6 32 ............T................ CAGGCCCGACAAATCAACGTACTGGTAGTTTC 51457 29 96.6 32 ............T................ AACGACGATCAATTTAAGTATAGCACAAAACC 51396 29 96.6 32 ............T................ GATTAAGCAAATTGTCAAACAGTCTTCTGAGA 51335 29 96.6 32 ............T................ ACTTTTGCCATTTTTACATGCCCTTTCCTGGA 51274 29 93.1 32 ............T...............C AATTTAATATTTGCTTAAACGCAAGTAAAAAA 51213 29 96.6 32 ............................C GAACCGGTTAATAAACGGGATTGAACGGTCGC 51152 29 100.0 32 ............................. GACCTAGAATAACCGTGCCGCCCTTGTCGGGG 51091 29 100.0 32 ............................. ATGCTACTTGCATCATTTCATTTCCTTTCCTT 51030 29 100.0 32 ............................. ATCTACGCGTTTGACACGTCGATTTCTAAACG 50969 29 100.0 32 ............................. ACCTAATTCATGGGAATCAGGAATTGCAACAT 50908 29 96.6 32 ............................C GCCAACGTACTGCAAATGCTGAGATGGAGAAA 50847 29 100.0 32 ............................. CACAAGGGCAAACGGCTGGCCATTCTGTACAA 50786 29 100.0 32 ............................. CCTGACGGGCCTAAGTTCCCTGCAGGGACGAC 50725 29 86.2 0 .......T.....C....A....A..... | CG [50699] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : GCCCGCGATAGTCGACCTGTTTTTGGATAAAGTAGCGCAAATCAAAATCCTGATTTTCCAGATAATTGTTCGATTGCCGCCGAGAATACCAGAAATAAAAGGTGACTAATCCGGTAAAAAGGAGTGCCGCAACGATAGATACCCAAAATAAAACGTGAATCAATTGATCTAAGCTCATCAGCACACCCCCTTCTCATCCCTACTGCGGAACCAGTTTAGCCGTTATTCAATGAATTTACTCTGTATTAGACTTATTGGATAATTTATTAAGCATTAACAATTATAGTGATTAACGATTCGTTTGGGAAGGAATTTATGAGTTGATGGTGACTCGGCCCTTCGATTAGTCACTATTTGTCTTGGCCTGATTTACTATTGCAATCGTTAATTCGTGATTGGCCGCCGTTCATCTGGATTGTGCTATGATTTAAAGCAGGTAAGTTAATAAAAAATGGTAATTGCGGATTTTTTGAATGCCGACGTAACGGAATTTGTTTAGT # Right flank : ACCATTACCATCAACTACAAAAAACCGTTAGGCTATAATAGTCTAACGGTTTTTATAGTTATCGTATTCTAAGCCTTCGCGCTGTCTCCTAAAAAGTAAAACCGCGCTACTTTCAAATGGCTTTAAATCAACGTTTGTTTCAAAATATTGTTCCTATTTTGTTCCTGCCGGGCTAGGCGATACATAGATACAGAAAAAAGCCCATTCATACCCCACATTAGAGAATGAACGGGCTTTTCAGTTATGCGTTACGTACCTTGGCAATAACGGCCCAAAGCACATCGTAACTAATTGCTTCCACTAATATCGTCATCGTCACCATGATGCCAAGAACCAACGCATTTTGGAATCCTTGACTCGTAATGCCTCCCAAGATTCCCCCCATAATATAAAGTATAAGAGCAACCGGTACCCACTTAAACGATAATTCAACGCCGCGCAGGGAATAGTGAATCATTAAAACGTAAATCACCAATGCAGTCTCAATGGGTGCTCCGTTG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : GTATTCCCCACATGTGTGGGGGTGATTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 217245-218924 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000026.1 Levilactobacillus acidifarinae DSM 19394 NODE_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 217245 29 100.0 32 ............................. CAGTCGACGGGCTGGCGGATCTAAATCCTTCA 217306 29 96.6 32 ............................T TAGGTGACACGGCTATTGATACGGACGTTGAA 217367 29 100.0 32 ............................. CATGAAATATCTAATCAAGCCGCCCCAAGGTA 217428 29 96.6 32 ............................T CACCCATCCGTCTAGCTTCGGTCTTGCCGTCT 217489 29 96.6 32 ............................T GCACGTCGGATTATACGGACCGAATCGGCCCG 217550 29 96.6 34 ............................T TGTACGTGAAGTACGGGATTCCGTTTGGCGAGTA 217613 29 100.0 32 ............................. ATCACCATCAATCTTAAGGGGGTCTGATTATG 217674 29 100.0 32 ............................. CAGCCGCACTCTTTGAAAGACGACCATATAAA 217735 29 100.0 32 ............................. AGAAACGCCTAGTGTTTTTGCAACTTGCGTTA 217796 29 100.0 32 ............................. ATTATTTAGTACCTCCGTTCATAGATGCGATT 217857 29 100.0 32 ............................. AAAGTTCTGCTCATTATCGCTTAAACGGTTAA 217918 29 96.6 32 ............................T CAGGTTAGCCTTCCGGCCGCCAAGCCATTGGC 217979 29 96.6 32 ............................T AACACTGACTATGCCATGAAGATAGCTTGGTT 218040 29 96.6 32 ............................T GATTTGCCACGTTATCATATTAAAATTGATGG 218101 29 100.0 32 ............................. GACGAAAGCGACGGGCGCCCCCGCCGCTTTTT 218162 29 96.6 32 ............................T ACTTCAACGAAATCAATTTTTAGTGTTGATGT 218223 29 100.0 32 ............................. ATTAAACCCATGAAATGCAAGAAAACAAGCCG 218284 29 96.6 32 ............................A CTTATCGCCCAACACTTGGCTGGGGGCGATTA 218345 29 96.6 32 ............................T TAGATTAGTCTATAAAATCCAGTTGACTCTTA 218406 29 100.0 32 ............................. CACCTTCGGGCTGATCGTAAGACCGACTCGAT 218467 29 100.0 32 ............................. TCACGGTCGGCGGAGTCCATCCGAATTAAAAT 218528 29 100.0 32 ............................. GATACCGGTCATCAGGTCCATCATCACCGCCC 218589 29 96.6 32 ............................T AAAGGGTTAGGCATTAACTGTCTGGCCCTTTT 218650 29 96.6 32 ............................T AAACGTTGACAAGCCTTTAAATAGTATGGTAT 218711 29 100.0 32 ............................. GTGGGCGCCCTCAAGTCCGTAGGTGGTCGTTC 218772 29 100.0 32 ............................. GAAATGTCGCTGGCCAACGAGACGGCTTTTAA 218833 29 96.6 32 ............T................ TACGCCCAATCCGAGATGGCAACTAACTATTT 218894 29 79.3 0 .....T..............A....ACTT | TG [218906] ========== ====== ====== ====== ============================= ================================== ================== 28 29 97.7 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : GTGCAGGACCAAATTATGTCGATTGGTGCGGTAAAACGCAACGCCAACGGTCAGGTGGAATCATTTCAACGGCTGATTCAAATTGAGGGGACGGTCCCGTCAAAGATTACGGCACTGACCGGGATAACAACTGAACAGTTACAGACTCAAGGCGTGGACTTGGCTACGGCATTGAAAGACTTGCGCGAGTTCGTTCAGGACCTGACAATTGTTGGATATAATGTCGGCTTTGACGAAAAGTTCTTAAACGTTGGCTATCAATTTGTTGAACAACCAAATTTGACGAATACTTTTCGTGATTTAATGCCAACGGTTAAAAATGCTCAGGAATTTTTAGATAATTACCGATTAGCGACAGTTCTAGAAAAGTATAAAATTCAGAACGCTGATCCGCATCACGCACTAGCTGACGCTCAGGCAACCCTGGCTTTAGCGGACAAGTTAATAAAAAACGGTGATTTCCGAATTTAGGAATGCCGATTTAACGGGATTTGTTTAGT # Right flank : TTTACAAAAGAGAATAATTCCTATGCTACTAGGATTGGTTGAGGTTATCATGATTTATACTGATTTCCGAACTTGCTATTGTAGAGCCCTGTATGTGAGTAGAGAAAATTAACATTCTCGATGGATCAAACTAAGCATAAAAATGACTGCCAGTCTTCAAACTAGCAGTCATTATGAGTCAAAATTAATCAGCCGAACCAATCAGCTGTCCCCGAACCACATCGTCCCGTTGTTCGTAGGCTAATTGTTGTGCCGGCGTTCGCGGTTGATGCTCATCGACAGGCGTTAGTGTAATCGTCGAGACCTGTGAACGGCTATTGCGTAATGGCGCTAAGGCTTTCAGGCCGCCATTCGCTTGTGGAATTAGCGTGTAGTGCCGGTCCCGGAGTGCCGCAAAGTAGGTCTCGTAATTTGGGGCTTCCAAGTATTGGGGGGCTAGGTGGATCACTTCTCCTGTGGCGTGTTCGACAAAAGAGGGGTCAATCCAAACCGCTGGTGTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 279381-280472 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000026.1 Levilactobacillus acidifarinae DSM 19394 NODE_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 279381 36 100.0 30 .................................... AAGACGTCAAGCGGTCTTTGATCGGTGCTA 279447 36 100.0 30 .................................... CGCATGGCCGAGAAGTACGACGTCTTCATC 279513 36 100.0 30 .................................... CAAAATAGGGAACTCTTTTATCGCCTGACT 279579 36 100.0 30 .................................... CGACGGTGTTACCGGCATCATCTCTGTTGA 279645 36 100.0 30 .................................... TGTCGGTATACTTCCCAGCGGGTTCATAAG 279711 36 100.0 30 .................................... CAAACACTACCATCAGACCGCAACTTGATA 279777 36 100.0 30 .................................... CCCATAATTAGAGTTATCGTCCGCAATCTG 279843 36 100.0 30 .................................... TAATTGTTGGTTTAAATAGGCCGTTACCAA 279909 36 100.0 30 .................................... ACCAAGGGTGCCCAGGGCAAACTGACTAGC 279975 36 100.0 30 .................................... TGAGTACCATCATGTAGTGCTGAACTTGTA 280041 36 100.0 30 .................................... CGCGTACCAAATAGGCCATTTCAGCATACC 280107 36 100.0 30 .................................... GTATCCTATTACAAGGCTAGCGCCTAGTCA 280173 36 100.0 30 .................................... CACCGTGCGCCATAAAAGCGTTGTGTGCGG 280239 36 100.0 30 .................................... GCTAAGCGGCGAAAGATTAAGCAAGATATC 280305 36 100.0 30 .................................... CAGTCTACTCTCGAAAAGTCGAGTACCTTG 280371 36 100.0 30 .................................... CAATATTCCCTGATTGATTTATTCCAGGAT 280437 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GCTTTAAGTTCCTTTCAAATTAGGGTATAAATTAAG # Left flank : CATGGCCGATGCCGATCGGTTCAAGGTTTTTAAGTAACTTAAAGTCGTTTAAAAGGAGCGCCACCTGCACGAAAACGTGAAGGTGGCGCTCCTTTTTGACTGGGGTCAATATTTCTGATCGTAGTCCCAGATGCCGTTACAGATGGCTAAAAACTGTTTTTGGGTCAACTGGGGTTGGCTCTTCTTAATGGTGCTCAGCGCCGACAACATCAGCGCACTCACGGTGCGGCCCTCATCGAGGGTGGACGCTAACTGAACGTTACCGTCGTCATCGGCTGTCACGGTGATCGAATACTTGGCGGAATCGGCTTGGGTCATGGTTAGACACTTCCTTTTAAGGTGATTTGGATTTACTTTTAGTCTAACACGTTGAGGAGAGAGGATATGGTGAATTCTCTGTAAGAAATTATTCGAAAGCAAGTTATTTTATCAAGAGCATTTAATGCTAACATAAAGGGGTATAAATTAAGCGGAGTCGCCTTATTGACTCACCTACGCCA # Right flank : GACGATATGGTATGAATGCTGTAATCATGGGGGATAGGTCAGGTTTTCCTGACTATAATTCTGCCGATTAAGCTTAATTTATAAGAAAAAAATCTCCCTTGGCATAATATCTGCCGTGGGAGATTTTTTTCTTATAGGACTGTTAAATTAGAATTATCAACAACGGCTTCTTGCGGCGTAATGGGTCCCAGCATGATATGCATGCTGCTGAATTGCTTTTCGGTTAGGACGAGTAAGCGAACTTGTCCGCTAGGTGGTAAACAGTCATTAACACGTTGTTCGTACTTTTTTGCCATGTCAGTCCCATTAACGAGTCGATAATAGACCGAAAATTGCATCATTACAAAACCTGCATTAATTAAATCTTTTCGGAAGCGAGCAGCGTTTCGCCGATTTTGTTTTGTGATGGTAGGTAAATCGAACATTACTAGAATTCTCATAAAGCGTTTATTCTCCATTATCATGTACCTTTAAGTTTTGAACAATTGGGAGTGCCAAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAAGTTCCTTTCAAATTAGGGTATAAATTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 510838-509771 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDV01000026.1 Levilactobacillus acidifarinae DSM 19394 NODE_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 510837 29 96.6 32 ............................C GGATCCAGGCTCCCGGATATCGGACAGTTGTG 510776 29 100.0 32 ............................. AACTAGATTGATGGGGGCTGTCAACAGTGATG 510715 29 96.6 32 ............................C CAGGCACTAGCTGGGACGACCAAGTTGGACTT 510654 29 100.0 32 ............................. CATAACTCGGAGCCGTGTTAGCACCATCTAGA 510593 29 96.6 32 ............................C ACAATTCCTATGCTTAAGGAATGGCCTTTTAA 510532 29 96.6 32 ............................C CAGTCCAGCTGAGATTGTGGCGGCTATCAAGG 510471 29 96.6 32 ............................C GATTATCCGACGGGTTGCTAGCGATGCTGGAA 510410 29 100.0 32 ............................. TTGTGTTGAAAATTTCGTCCCAGTTTGTTTGT 510349 29 100.0 32 ............................. TTTTGAGCGCCTCAACAATTTGGTTAAAATCA 510288 29 100.0 32 ............................. ACTCCCAAGTGCTTTCGGGGTCGTCGATGGTG 510227 29 100.0 32 ............................. CACCAGTATATCCGCTTAAAGAAATGAGCTTT 510166 29 100.0 32 ............................. GCGACCTTTCACAGCGTACTTTTTGGGGATGT 510105 29 100.0 32 ............................. AATCTTTATCTTTTATAAGATTGTCCCCATTT 510044 29 100.0 32 ............................. AACACTTGTTTTACTTTTTCCTTTGCTTCGTT 509983 29 96.6 32 ............................C TATCACGCCAATTTCGGGTATAGCTGGAACCG 509922 29 96.6 32 ............................C ATTACCGGTTCACCGGAAACCGATACATATGA 509861 29 96.6 32 ............................C TGGTTTTGTGCGGATTTTTCCCCCTGCTGTGC 509800 29 96.6 0 .........................A... | C [509774] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : AACTTTGAAATTCCGATTCAGGCGGCCATTGGGGCGAAGATTATCGCACGGACAACCATCAAGGCCTACCGGAAGGACGTCACGGCGCACCTGTATGGTGGGGACCGGACGCGGCGGATGAAGTTGCTGGAGAAGCAAAAAGCCGGGAAGAAACGGATGAAGGCCGTGGGTCGCGTGGATATTCCACAAGAAGCGTTCATGGCCGTTCTTAAAACTGATGAGGACGAAACCAAGTCATAGATATAATGGAGAAAGACTCTGTTTTAGCTGGTTAAGTATATCAGCGGGAACAGGGCCTTTTTTGTAAAAGTTTGACATGAAATCTATTTAACATAACAAAAATTATATTAAGTTAAGCTTGAATTTGCTCAGAATAACCTTCAGGCTTGCAAGCGTCAGGCGAGCTTAGTAAACTGTATTAAAAGCGTGGCCTTGATCAAGTTCATGTAAAACCGAGAATTGTGAATTTTGAAATGCCGGTATAATGGGATTTCTTTAGT # Right flank : AATTATTGTTATTAGCATCCTGTTAGACGTAGGTGGTTGCAGATAATTGAGTGACTAAACCCTCAAGACAGGTTGAAGGTCTAACCATAGCCGACTTTAACCAAGCCCGTTATAATGATTCTAATGTAACAGCGAGCTCAGATTAGGGGGGAGATCTTATGTTAGGGTACGTTCTAGGTCGCGATGGGGATATTCACGACTTTATTGAAACACTAAAACGGGTGCATGGTGAGTTAGATTACGATGAGATTCAATTAGTGCGAGAGCTCATCGAGTTAGCAACTCATCCCGGATATACGATTAACATGGCCAAAAAACTCAATCTAACCTCCGTTGAATTGAGTGACTACCTGCAACATCTCCGGGTCTGTGGGTTAATTGATTATTGGTCCGATAGCGAAAAAACTTCTAAAACGTTAAGTCTGTTATCTGAATAGAAAAAGGCCGCCGTTCACGCGAACGGCGGCCTTCATGGTCTCAATGTCTATGAATTTCTAGCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //