Array 1 3-1584 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXG01000001.1 Cecembia calidifontis strain DSM 21411 Ga0242569_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 35 ..................................... CAAACTTGACAATATAAACCAGATAGAAATAATTC 75 37 100.0 38 ..................................... TAGGTACTTTGTTTGATGCCCTTAGTAATTTGGCCCAG 150 37 100.0 37 ..................................... TAGACCTGGACAGTTTTCAGCCGGCCACTCCTGCCAG 224 37 100.0 37 ..................................... ATGGAATAACTGATTGCCGTAACCGTTCCTGAATCAT 298 37 100.0 37 ..................................... ATGCCTGGGGAAATACTTCCGGGAACCTCCTTCCGCT 372 37 100.0 37 ..................................... AAGAACTGCTTCCAAAGAAAGAGAAAGGAGAGGGGAA 446 37 100.0 37 ..................................... GACTATAACCCAAACGCTGAATTTTGGGCCCATGAAG 520 37 100.0 37 ..................................... AAATTCGCCATGCGGGAAATATACGCGAAAAATAGGA 594 37 100.0 38 ..................................... TTACAGCGCCGGGGCCGAAAACACCCTGGCGCAAAATA 669 37 100.0 36 ..................................... AGATGGTCAATTACCGTCTCCCTATCTGTTTTGAAT 742 37 100.0 37 ..................................... CCTCCATTCTGCTTATCAGCTAGAAAAATTGGGTCCA 816 37 100.0 38 ..................................... CAAAGCTATGAGATATTGGTCACCAGGCAAAGCCTAAA 891 37 100.0 36 ..................................... TGGATATCTCCTTTCAACGGGAGTAGCATATATTTA 964 37 100.0 38 ..................................... CCACATACCGAGCCGAAAGGATAGCAAGGACAGAAATA 1039 37 100.0 37 ..................................... GTAAGTCTACTAAAAGATTAATTATAGAACAAACTAA 1113 37 100.0 36 ..................................... ACCTTGAAGGACTTGCGCAAAGGAATTTCTTTAACT 1186 37 100.0 35 ..................................... TGGACCCTTCGATAACCTTCCCAATTCCATTATAG 1258 37 100.0 37 ..................................... CTTAGGAGAAGTGACCGGGGATGACGTCTACAGGGTT 1332 37 100.0 35 ..................................... TGTTAGCGAATGGAACGGGGATAATTCCAATGCAG 1404 37 100.0 35 ..................................... CATCTACACCATGACAACAAACTGGATTTACAAAG 1476 37 100.0 35 ..................................... ATAAAGTTGAAAATAAAAGACGGTGTTTTTTCGCT 1548 37 81.1 0 T..........................AT...T.TTA | ========== ====== ====== ====== ===================================== ====================================== ================== 22 37 99.1 37 CCTCCCAAGGCAAATCCATCAAAACAAGGATTGAAAC # Left flank : TAC # Right flank : AAAAAATCCTTTTCCAAGTCTACCAATCAAAATCCTTTTCAGGCCCAGGTTAATCTTTTGAGAGTAGAAAATGATGAATAAAAAAAAAGCCTCTATCAAAGAGGCTTAGTGGGAGGTGAGGGATTCGAACCCCCGACCCTCTGCTTGTAAGGCAGATGCTCTGAACCAGCTGAGCTAACTTCCCATGATTTTTAATAAGTGGGAGGTGAGGGATTCGAACCCCCGACCCTCTGCTTGTAAGGCAGATGCTCTGAACCAGCTGAGCTAACTTCCCATCAGAAACGTTTGCTTACCAAACGGAATGCAAATGTAGAGGTATTTTTATACGCTGCAAATTTTAATCTCAAAAAATATACATCATTTTTTTTAACACCCTGAAAATGAATCTTGTTTTTTTTTACTTTTTAAAACTTACCCAAACTCTTTTGTGGTGAAGGAAAAATTTCCCTCACCACATATTTTTTTTAAATTTCAAACTTAATCCCCTGTGCCAACGGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCCAAGGCAAATCCATCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 185574-188883 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXG01000001.1 Cecembia calidifontis strain DSM 21411 Ga0242569_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 185574 46 100.0 30 .............................................. TTTATCAGGCGGTTACATAGATATTTTTAT 185650 46 100.0 30 .............................................. TCCGATTTAGGGAGCAGAAAGGGCAGCTTT 185726 46 100.0 30 .............................................. GCCACATTGCAAAGGCAGATCGAGGAAGCT 185802 46 100.0 29 .............................................. TGTCTGCTATCATTGCTTACACCGCCCAG 185877 46 100.0 30 .............................................. TAATTGATCTGGATTCCCTTTTCGCAGATC 185953 46 100.0 30 .............................................. ACCGAAGTGATTGGATTGATTCGTCCTTAA 186029 46 100.0 30 .............................................. CAGCCAGCCCACGTTGTCGCGCCCTACCAG 186105 46 100.0 30 .............................................. GGTGAAAATTGGACTTTGAGGCCAACCCCT 186181 46 100.0 30 .............................................. AAATCACATTGGATTTATCAAAGGTTCATT 186257 46 100.0 29 .............................................. TACCATTAGAACAAAAATCTTTTGTCCTT 186332 46 100.0 30 .............................................. AACGAAACAACAAATTATATTACGTTATGT 186408 46 100.0 30 .............................................. TTATCCTCCGGAATGTAATTGGCACCCATA 186484 46 100.0 30 .............................................. AGAATTTTATTGGCCGCAATCTGGGCTTCT 186560 46 100.0 30 .............................................. GAAAAAAGTGAGTTTTTTGGATTAATATAT 186636 46 100.0 30 .............................................. CTTCGTTTCTTCGATTGAGAAGCAATATGT 186712 46 100.0 30 .............................................. ACATGGACAGCAAGAACGTCAGGAACTACT 186788 46 100.0 30 .............................................. GGAAAGCATAGCACATATACTACTTTTCAT 186864 46 100.0 30 .............................................. TCTTAAAGAGGTGGCTTTATGTTTCCACCC 186940 46 100.0 30 .............................................. ATTGCCATGGATATTGCCAATCAATATCCT 187016 46 100.0 30 .............................................. ATTATGCCTCCGGCCAATACCCAGTTATTG 187092 46 100.0 30 .............................................. CCGAACTTGGCTGAGGAGCATATCTCGCCA 187168 46 100.0 30 .............................................. TTCTGTTTACATGAGCATTCCTCAGGCTGT 187244 46 100.0 30 .............................................. CCATAAAAACAGGGGTAACTACGAGTGCAA 187320 46 100.0 30 .............................................. CATATTCCTCTTTGTAAGTACCCGTAATCA 187396 46 100.0 30 .............................................. CTGCTTGCCATCGACTACCAGTCGGACGCG 187472 46 100.0 30 .............................................. TGCAGAGGATGATGTTATTGTTCTGAATCC 187548 46 100.0 30 .............................................. TCCTGCCTGTGAACGGATGCTCCAAAAACT 187624 46 100.0 30 .............................................. CTATGGCTACAAATCCCACATGCGCATTGA 187700 46 100.0 30 .............................................. CACCAAGCACCGCCAAAAAGAGCTTCAGGA 187776 46 100.0 30 .............................................. TCTTCAAAAACAGTTTCACCAGTAGTATTG 187852 46 100.0 30 .............................................. TTATAGAGCTTGGCCAGTTTGTAAGCATCA 187928 46 100.0 30 .............................................. GCATCCAAAGCAAAGGCAATCAGCAAACTC 188004 46 100.0 30 .............................................. GCAAGGCAGGTGATCTCCTTTGGTTAAGGG 188080 46 100.0 30 .............................................. AAGTCGCAGAAGTACCGGGTACGTCAGCTT 188156 46 100.0 30 .............................................. CCTGGAACTCCAACCCCTGGGTCTGGGTAA 188232 46 100.0 30 .............................................. GGCACTTGTTAGGGGAGGGTGGACAGATGC 188308 46 100.0 29 .............................................. TGAGTTCTTCCAGTTCTTTTTCTCTAAGG 188383 46 100.0 30 .............................................. GCCCGCTATCACCTCATCATCAGAAAGCAG 188459 46 100.0 30 .............................................. CAGTTCGGGAGAAGCCATTGCCAATATGAT 188535 46 100.0 30 .............................................. TTTTTAGGTTAAGCCAGCAATACAACATAT 188611 46 100.0 30 .............................................. GCAACTTCTCAAAAATTAGAAGCCAATGTA 188687 46 100.0 30 .............................................. TTTTTAGGTTAATCCAGCAATACAAGATAT 188763 46 100.0 29 .............................................. GTTATAACATCAACATCATCCAAAAGTCC 188838 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 44 46 100.0 30 GTTGTGAATTGCTTTCAAAATGGTATCTTCCTAAGGAAATCACAGC # Left flank : GGAGTGGAAGAAATTTTTGAAAAAAGGAGGCTATATTGCGGTAAGCGAGGCTTCCTGGTTTACAGAGGAAAGGCCCAAAGAAATCCAGGACTATTGGGACAATGCCTATTCTGAAATTGATACGATTCCCAATAAAGCCGCCCAACTCCAAAAGGCCGGCTATATCCCCGTAGCATTTTTTATCCTTCCTGAAAACTGTTGGACAGACAATTATTATGTTCCCCAAACCAAATTCGAGAAAGATTTTTTAAACAAACACAAAGGCAATCCTACTGCCAAGGGATTTATCGATGAAATCAGAAAAGAAATTCGGTATTATTCCCAATACAAGGATTATTATGGCTATGCATTTTATATTGGAAAGAAGATTTGAGGCGGTGATTTCAAATCAATCAAAGGAAGAATCATGAACACCTTTGAAAATATTAAAATCAGTGAATAAAATGGTATCTTCCTAAGGAAATCACAGCGGGAGGGGCGGACATGGGGCTGATCCCGCA # Right flank : CATACCCCACGCTAAGTGACTGGTATGCTGTATTTTATGTGCTAAAATAGAAAATAAAAAATAATAGGAAATGGAAGAAGGGGTAACAGACCTGTCAGGTTTTCAAAACCTGACAGGTCTTTGATTTAACTTTTCCTAAGTTTCGAACTTTGGAAAAGGTTTACTACTCTTTTCAAAACAATTCTAACTGTTGCGAGGGCGGCTCTGTCTCCTGCTTCTTTGTCCCATAAAAAATCTCCATCATCCCAAACTGTTTATCTGTAATGGCCATAATTCCCACCTTCCCTTTGGGCGGCAAATTCTTTTTGGTTCTTTTAATATGAACTTCTGCATTTTCCCTACTGGCACAAAATCTCATATAAATCGAAAACTGGAACATGGCAAAACCATCGTCCAGCAACTTTTTCCGGAAAGAAGTGGCAATTTTTCTATCCTTCCGGGTTTCGGTTGGTAGGTCAAAAAAAACTAAAACCCACAAACTCCTATACTGATTAAGTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATGGTATCTTCCTAAGGAAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.04%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 3057320-3054453 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXG01000001.1 Cecembia calidifontis strain DSM 21411 Ga0242569_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3057319 37 100.0 36 ..................................... AATGCATAATTTCCTTTTTGAAATGGTTCTGCATGG 3057246 37 100.0 35 ..................................... TCAGATATTCTGGGCTGTGGGGCATTTTCGAAATC 3057174 37 100.0 36 ..................................... CTCTTACCTCATTTCCACATAGGCCTATTTGGTCTA 3057101 37 100.0 36 ..................................... ATCATGTTATCAACCATGTCATTAGTTTTAATAACA 3057028 37 100.0 37 ..................................... GCTGTAACGCCATTCTCTTCGCAAAATTCTTTTAGAG 3056954 37 100.0 34 ..................................... AAAAATAAAGGGAGTTTCCCCCCTCTATTTAGTT 3056883 37 100.0 34 ..................................... CGCAAAATACAAATGGGTTGCCCCATGTTTAATA 3056812 37 100.0 35 ..................................... TATCCTTATTCGAACAAGGTGTCCAAATCCTCGTA 3056740 37 100.0 35 ..................................... TTTTTGTCATAATTTCTAATGGGTTTAAATGTGTT 3056668 37 100.0 35 ..................................... TGATTCACACTGAGTATTAGCTGATTAGACTAAAG 3056596 37 100.0 36 ..................................... GCTTTTCTTTTGAAGCATTGAAATTGCACCCCCCCA 3056523 37 100.0 38 ..................................... AATACAAATGGGTTGCCCCATGTTTGATTGCCTGACGT 3056448 37 100.0 36 ..................................... AAACGGATATCCGTTCACATTTACACGAACAACAGC 3056375 37 100.0 35 ..................................... ATTTTAGAGGTATACAACTGCTCACCCTTGGGAAG 3056303 37 100.0 34 ..................................... GAAGAGTAATGATAGAATGATAATAAAGAAAACA 3056232 37 100.0 35 ..................................... ATTTTAGAGGTATACAACTGCTCACCCTTGGGAAG 3056160 37 100.0 36 ..................................... GAAGCATAACCCAGTTGATTGAAAACATATTTATTT 3056087 37 100.0 36 ..................................... TCCTCGTAAGTGGAATTGAAGGACAATTTTGTTCTC 3056014 37 100.0 36 ..................................... TCTTTTGCAATAGATTTGAAGGATTGACCTTCAGAA 3055941 37 100.0 36 ..................................... CTCACCACGCAGGGAATGAAATTTAGCAATCGCCAT 3055868 37 100.0 36 ..................................... AATTCTTTTGGAGATATATTGTGTCTCAATGGGGTA 3055795 37 100.0 36 ..................................... TATACGATATCCATCTGTAATGAATATCATCTTCTA 3055722 37 100.0 35 ..................................... ATGAATATCATCTTCTATTTCATCTTGTCTAAAAG 3055650 37 100.0 37 ..................................... ACCATTCTCATCAACGATGGGTACCAATTTGTACCCG 3055576 37 100.0 36 ..................................... TGAGAAGAGGTTCACCATTCTCATCAAGGACAGGTT 3055503 37 100.0 34 ..................................... TTTTACCTCTTGTTTGAGAAGAGGTTCACCATTC 3055432 37 100.0 36 ..................................... AATCCTCGTCAAGAAACTGTGGTTTTACCTCTTGTT 3055359 37 100.0 36 ..................................... AAAAAGGATGAGCCCCGAAGGGCCCAATCCATTAAT 3055286 37 100.0 34 ..................................... CTGATTTCTCACCACGTAACGAATGAAATTTAGC 3055215 37 100.0 36 ..................................... CGTCAAGAAACTGTGGTTTTACCACGTCCATTTTAA 3055142 37 100.0 36 ..................................... TTCCAGGACATTGCCTTCAGAGTCCGTAAAAAGACC 3055069 37 100.0 36 ..................................... TTCTTCTACAAATACTTTTTGAAATCCTGCATGGTT 3054996 37 100.0 37 ..................................... TCTTTGCTATGCCATTTTATGCCATAAGCAAAACCGT 3054922 37 100.0 36 ..................................... CCTAATGCCGTCAATAGCATGGTTAAAATCATCAAT 3054849 37 100.0 35 ..................................... GCATGTAATATGCATATCTGGCCGTATTTGTGATT 3054777 37 100.0 34 ..................................... CTTTCATACCATGATTTCAAAACCGTAATCATCC 3054706 37 100.0 36 ..................................... TTTACTACAAAGGCTTTAAACCTATGATCAGATCTA 3054633 37 100.0 34 ..................................... AGCTCAAACCCCGAATCCCCATCTAAGCTTCCGT 3054562 37 100.0 36 ..................................... ATTCCCATCCATTTCCCAGTAGTAGAGGTCATCCTC 3054489 37 83.8 0 ..............................GG.CCGA | ========== ====== ====== ====== ===================================== ====================================== ================== 40 37 99.6 36 GTCAGAGTACCGCATCCACTAAAACAAGGATTAAGAC # Left flank : GTAAATGAACATAAATTTGGTTTTGGCAATTATATTGAAGAACCTAATCTATGGGGGATCTATAAGCTAACAGGGAATTGCGGCACTGGAGATTATTTTCATGTCAAAAAAATTGAAGCTTCAACAAGTAAAGAGCATCCACTACTAAGCCAAGTCTTGGGGAAATTCAACAAGCGGGAGCACAATTCTTTTGGTTTTATCAATGGGAAATTTGTTGAACCAAATTTGGTTGAAAAGCACAGCCTAAAACATAATGATTTAGTAGAAGGTACTGCCTTACTTGCACCGGTAAAAGGTAAAAAAGAATGGGCATGGAAAATGATCTTTATCCAAAAATCAGATAAAGAAAAAGGCTAAAAAAAGCTTTTTAAAATTGAAGAGAAAAGTTTAGATTTGGAAGAGACTGTAGAAAAGATGAAGTTTATTTTCAAAAAACTAAATATTTTTGAGAGGTTTTTCAATCGCAAAATATTGAAAACCAATCAAAACTGGAGTTAGCA # Right flank : GCGCTAAAAAAACCATCCCTTAGGATGGTTTTAGCGAGGGGCCAGGTTGCAGGGGGGACTGGACGTTAGGAAAATGTCCCTGTGGATATTTTTAGGCCTGGGCCAGCATGCAGCGCAGGATTATAATATCATAAGAGTACTGTCCCGATATCGTTCCTCATCGGGATAAACTATCCACTATAACAAGGAGGACCGAGCGCTAAAAAAACCATCCCTTAGGATGGTTTTAGCGAGGGGCCAGGTTGCAGGGGGGACTGGACGTTAGGAAAATGTCCCTGTGGATATTTTTAGGCCTGGGCCAGCATGCAGCGCAGGATTATAATATCATAAGAGTACTGTCCCGATATCGTTCCTCATCGGGATAAACTATCCACTATAACAAGGAGGACCGAGCGTTAAAAAACCATCCCTTAGGATGGTTTTAGCGAGGGGCCAGGTTGCAGGGGGGACTGGACGTTAGGAAAATGTCCCTGTGGATATTTTTAGGCCTGGGCCAGCAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCGCATCCACTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 3079778-3077352 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXG01000001.1 Cecembia calidifontis strain DSM 21411 Ga0242569_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3079777 37 100.0 34 ..................................... TTGTATGTTTTAGGGTACTCAACCCAAATATGGT 3079706 37 100.0 35 ..................................... CGTTCCCCAAATATCATTGTTTGACCTGTTAAGTT 3079634 37 100.0 34 ..................................... TATTTCCCCTCCTTTAAAAGTTCTAAAATCCTTT 3079563 37 100.0 34 ..................................... TAAATAAATTCTGCTATTTTTTGTATTTTCATGG 3079492 37 100.0 36 ..................................... TCTCTTAGCGGGGTAATTTTATACGATACCCATCTG 3079419 37 100.0 35 ..................................... GATGGCGCGCATTTATTGTTTCATGTTCTCTAACA 3079347 37 100.0 37 ..................................... TAGACTTTCAGAGCTCTAACTTATAACTAAAGCTTAA 3079273 37 100.0 36 ..................................... CTTTGTTAAAGGACAGCTTGAGTTTGGTGCTACCGT 3079200 37 100.0 37 ..................................... TAGACTTTCAGAGCTCTAACTTATAACTAAAGCTTAA 3079126 37 100.0 36 ..................................... CTTTGTTAAAGGACAGCTTGAGTTTGGTGCTACCGT 3079053 37 100.0 37 ..................................... TTAACTGATCTTCATTCAACGGAATTCCCTTGGCCCC 3078979 37 100.0 37 ..................................... AAAGTTTACGCTTTCCATTTAAACACATTGATAGGTA 3078905 37 100.0 35 ..................................... ATTACCACCTGTACTGGCTGAATCATGTTGGATAT 3078833 37 100.0 35 ..................................... GGTTGGAAATTTAATATAAAACGATTCCTTTACTT 3078761 37 100.0 35 ..................................... TTTGATAAGCAAGCTTTATGATGTTGTAGAATTTT 3078689 37 100.0 33 ..................................... AAAACTCCCATTTTTTGAAGTTTTTTTTTAACT 3078619 37 100.0 35 ..................................... TGCTCCAGATATGAATACCCCATAAAGTCTTGGAA 3078547 37 100.0 34 ..................................... TCATCAAGGACAGGTTTCCCTTCCTCATTAAGCA 3078476 37 100.0 35 ..................................... GTTTTTATTTTATCTCTGGTGTCTCTATCGAGAGA 3078404 37 100.0 37 ..................................... ACCATTCTCATCCACAATAGGAACTAATTTGAACCCG 3078330 37 100.0 36 ..................................... CCAACACTTTGGAACAAAGTGAATTAAAAAAGGATG 3078257 37 100.0 35 ..................................... AGTGAGTTGTGTTTCAACAGGATGAGAGCTGATTT 3078185 37 100.0 37 ..................................... ACAAACTGGTTTGCTTTAACCAAAATAAGGGCTGATT 3078111 37 100.0 36 ..................................... ATAAGCGAGCTGACGTAGCTCAACACCCTCTGTGGT 3078038 37 100.0 35 ..................................... AACCAGCTTTAAAGCATCTAATATACCCTGAAGTT 3077966 37 100.0 34 ..................................... AGCCTCCCAAAGTTTTTCTGGTTCTGTTTGCGCT 3077895 37 100.0 35 ..................................... CTGATCAGAAATATATCTATCTCCAATCATAACCA 3077823 37 100.0 38 ..................................... TTTGCCTTAATAAGGATTAAAGCGGAATTTTGCCCACG 3077748 37 100.0 35 ..................................... TGTCCAACCAAAGACGAATTGATTTGCCTTAATAA 3077676 37 100.0 34 ..................................... CGAAGCGGCAAGATGTATAATATCCAGTGTTGTT 3077605 37 100.0 36 ..................................... TCAGGGCCATTTCTTCAAATGTCTGTTGTTTGAATA 3077532 37 100.0 36 ..................................... TGTTAACGCTTTCGCCGTTAATTGTTGTTCTTTTTG 3077459 37 100.0 34 ..................................... TCATCTCTCCATAATCATCTCACGGTAATAAGCA 3077388 37 83.8 0 ..............................GG.CCGA | ========== ====== ====== ====== ===================================== ====================================== ================== 34 37 99.5 35 GTCAGAGTACCGCATCCACTAAAACAAGGATTAAGAC # Left flank : TGGATTCTATATTTTTTTCTTTGGCTTTGTCTTTCTGTTGGAGTCCTACTTTATCCTGTATAAAATCAGTGCCTCCGAAACTCTTTATGAACAATTCCTGGCGGCGGAAGAGGAGTACGGCCAGCAACGTTTGGCGTTTTACAAAGAACAAAAGGACAGGATGTTAAAGGAGAAGGGCTTGCTGGGAGGAGATTATGATAAGGTCATTCAATTGACTTCAAGTGGAAGAAGGAAAATCATTTAAGTTTTTTTGGGTGAGTTTTTGATCTCATTTTTAAATGGCAATGATTGATTTTTTTGGCTTACTTTTTTGACTGAATCTTTTAATTACTAAAAAAGCAACAGTTCTTTTTGAATTCGTCTATTGGAAATGGTCCTTTGTTGCATTAATTTAGAGGTCTACTGACAGCTAAGATGGAAGTTATTTTCATAAAACTAAATATTTTCGATATCATTTTCAATTGCAATGCACTGAAAATCAATCAAAAATGGAGTTGGCT # Right flank : GCGTTAAAAAACCATCCCTTAGGATGGTTTTAGCGAGGGGCCAGGTTGCAGGGGGGACTGGACGTTAGGAAAATGTCCCTTTGGATATTTTTAGGCTTGGGCCAGCATGCAGCGCAGGATTATAATATCATAAGAGTACTGTCCCGATATCGTTCCTCATCGGGATAAACTATCCACTATAACAAGGAGGACCGAGCGTTAAAAAACCATCCCTTAGGATGGTTTTAGCGAGGGGCCAGGTTGCAGGGGGGACTGGACGTTAGGAAAATGTCCCTGTGGATATTTTTAGGCCTGGGCCAGCATGCAGCGCAGGATTATAATATCATAAGAGTACTGTCCCGATATCGTTCCTCATCGGGATAAACTATCCACTATAACAAGGAGGACCGAGCGTTAAAAAACCATCCCTTAGGATGGTTTTAGCGAGGGGCCAGGTTGCAGGGGGGACTGGACGTTAGGAAAATGTCCCTTTGGATATTTTTAGGCTTGGGCCAGGATGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCGCATCCACTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 5 5043468-5044389 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXG01000001.1 Cecembia calidifontis strain DSM 21411 Ga0242569_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5043468 37 100.0 37 ..................................... ATGGGCAGACATATGGCAGTGCGCCGAGTGGGACGGC 5043542 37 100.0 38 ..................................... AGAATGATTCATAGGTAACCCGCGCCTGTCTTAAAGGT 5043617 37 100.0 37 ..................................... ATGAAAACGGTGATTTCAAAGAGTTGGTCGGTAATAA 5043691 37 100.0 37 ..................................... AACACCACCATATCCCCTTGTTTCATTGGTATTTGTA 5043765 37 100.0 37 ..................................... TTTATATCACTTTTTGCTCGGAGATCTATCCGGTATT 5043839 37 100.0 36 ..................................... GGGTAATCCAATCCCTTGTGGCTGCCTCAAGGTCAA 5043912 37 100.0 38 ..................................... GCATTTGGGCGATGCCTTTGAACACGTTGCCCCCCAAA 5043987 37 100.0 36 ..................................... ATCAACAAGCTGTATGATAGAAGATAAAGAAGCGCT 5044060 37 100.0 36 ..................................... CAAAAAAAAGCCCCGGATTTCTCCGAGGCCTTTTTT 5044133 37 100.0 37 ..................................... CCACATGTACCGCTACATCCCTGTAATCAAGTTCAGG 5044207 37 100.0 36 ..................................... ATCAAATAATTACAAATGGAAAATATTACTGATAAA 5044280 37 100.0 38 ..................................... GAAAGCCACTTGATAGGCTATTGGATTTGTTACCTGAA 5044355 35 94.6 0 ...........-........-................ | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 99.6 37 CCTCCCAAGGCAAATCCATCAAAACAAGGATTGAAAC # Left flank : CGATGGCGCCTCTTGATTATAAGTTTGCGGAATACAAAGACCGTATATTTGATACTTACAGACAGCAATTAATCTGCTATGCGATCTTGATTGAAGATAATTTCAACAAAAAGGTAAATAATGGTTATTTGGTTTATGTCAGAAGTAAGAACAAATTGGTAGAAGTACTTATTTCGGAGAAGGACAAGGATTTGGTTAGAAAATCCATTGGTAGAATTCAAGAAATATTGGAAAAGAACCATTTTCCAAAAGCTACCAAATTTAAAAGAAGATGCTTATCTTGCACTTATAGGAACATATGCATCAAATAATCCGCATTGCAATTTATTTCCCATCAAACGAAAACCACCTTTAAGAAACTTAAAGTCAATCATTTAACCCAACGGAACTTAATAAAAAAATACAATGAAAACGCTCTTTGACATTTTGAAAAAGGACAAAAAAGCAAAACAAATTTCTCGATATTTCATTGATTTTAAGGCGGTTGAATCATTGAACGG # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCCAAGGCAAATCCATCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //