Array 1 393323-392013 **** Predicted by CRISPRDetect 2.4 *** >NZ_STFZ01000011.1 Rhizobium sp. FY34 NODE_13_length_613643_cov_65.543121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 393322 29 100.0 32 ............................. ATGTCATTGCGAAACCTGACTATTGAGTTTTC 393261 29 96.6 32 ............................C CTTGATTGACGACCTCGACGCCAAGACAACGG 393200 29 100.0 32 ............................. CTATCACAAAGATCAACGCGGCTATCGTCCTC 393139 29 100.0 32 ............................. CCTATGCTTCGCGGTGACGCTGGTTGGCAGCA 393078 29 100.0 32 ............................. GCGTAGATGGGCGCACCACAATTTCTGGTGCC 393017 29 100.0 32 ............................. GCGCATGCCGAAACGCTGACGGTTCCGTCTGC 392956 29 100.0 32 ............................. TTGCATTCACACTTTCCGATGCGTCTCGCTTG 392895 29 100.0 32 ............................. CGGTCATCACAAATGCTGGGGTATGGATTTTA 392834 29 100.0 32 ............................. ATACGGTAAGCCAGTCCGTGGGGCGCATCTGG 392773 29 100.0 32 ............................. TGCTTTCCGTTGAGCAGGCGAGCATTGACCGG 392712 29 100.0 32 ............................. GCTTTTCAATCGTTCAAGCCGGCTGAAAAGGA 392651 29 100.0 32 ............................. CCGACATTCCATAGACGGGCAACCTTCCAACA 392590 29 100.0 32 ............................. CAGATTGCCTGTCCCAGGATGCTTAAGGTGCA 392529 29 96.6 32 ............................C CGTTGCGAAAATTGGTGCCCATCCGCTATCGC 392468 29 100.0 32 ............................. CTATCGAAAATATGTCAAATGCCTTAGCCGCT 392407 29 100.0 32 ............................. CCTTTTCGCCGCTATAGGTACTGTATGGGGTG 392346 29 100.0 32 ............................. CTGGGTATGAGGCGCTGACCTGGGTGCAGGTA 392285 29 100.0 32 ............................. TCTTTCTGATCTGCATGAGAAAGGCGTAAAGG 392224 29 100.0 32 ............................. AACGCTTCGTGCGGCCCAGGAAATCGGTTTCT 392163 29 100.0 32 ............................. AGGGCCGTCAAGAAGGCAGCGCTGATCGACAA 392102 29 100.0 32 ............................. GCTTTTTGCGTGATGCCTATCGCTACAACCCA 392041 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : GCCCCGACACGCCGGAGGATGCTGTCGGCCCAGCCTTTGCCGATCCACCACCATCGGGCGATGAGGGGCTGCGCGGATGATGGCGGTGATCACCAACAACGCCCCGCCACGTCTGCGTGGGCGGCTTGCCGTCTGGCTTCTGGAGGTGCGTGCCGGCGTTTACATCGGCGTCTATTCAGCAAAGACCCGCGCTATGATCCGCGACCAGATCGAAACCCTCATCGAGGACGGCGATGCCGTGATTGCCTGGAGCGCGCCAACGGATGCCGGCTTCGACTTTGAAACATTTGGTCGCAATCGCCGCGAGCCGGTTGATTTCGATGGCCTGAAGCTCGTCGCCTTCAAGCCTCTGCCTTGATCCCTTCCTCCGATCAAAAGTCCTTCATTGCGTTTGGGCTGCATGCGGCATAGGATCGTTTATTGCCTGTTTTTTGCTCTCAAAATTCGGTAGGAATTTGCATTCGGCACTTGTCGAATAAATTCAATGCCTTCCAGGAAGA # Right flank : GGCGACCTGTTCGCGCAATGCGACCGCGTTAAGTATTTTACGCGTGCGCGGGATTAAATCTTAAGCGTCGCTTGTATGGTTATGGTGATATCAATCCCACAAACACGACAAAGGCGCTGCTGCCAACCTATCGCCGAAGGGAACTGTATCAGTACTATCATAAAGCACCACGCCAAAGGCGAAACGTTTGCCGGCAGCCTCAGCCAAGGCCTTTAAACCGGAAAAATCTCCTGCCTTGACCGTGGCGCTTGCTTTGACTTCGATGCCGACAAGCATTCCGTCGTCGCGTTCCAGAACGATATCCACCTCGTGACCATCTCTATCCCGGAAATGATGCGCCATCACTCTGATGTCAGATGCCGTCATGAGCTTCTGGACTTCGGAAAAAACGAAACTTTCTAAGAGCGCGCCGAAGGTCCCGCGGTCGGCCTTCACCCGATCAAATGTGAGCCCGCGTACGGTTGCCAGCAAGCCTGAATCGACAAAGTGCAGTTTTGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 400176-399780 **** Predicted by CRISPRDetect 2.4 *** >NZ_STFZ01000011.1 Rhizobium sp. FY34 NODE_13_length_613643_cov_65.543121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 400175 29 100.0 32 ............................. GCGTCAGATACAGCCAAACCCCTGCACCTTAA 400114 29 100.0 32 ............................. TCTGCTGACAAGGCTACCAAGGCCCTCGGAAC 400053 29 100.0 32 ............................. CTTCTCCCACTCGTCACGCAATGAGAGCTGCC 399992 29 100.0 32 ............................. GAAGATGCTGCTTTTTATATGGAATTGTGGAA 399931 29 100.0 32 ............................. AGGACTTCGCAGCCCCATGGCGCATCTTCGGC 399870 29 100.0 32 ............................. AAGCTGCAGGCCTTGTGGATCGCCGGATATAA 399809 28 86.2 0 ............TG.........-....C | CT [399783] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GCTTGGCGAAAAAACCGTGACGCTGCGGCTGGGAAAATATGATGGCTCGACGCTCGTGCCGCTCGTATGCCGGCAAGGCGCGTCCGACGCGCTGAACTGGGCGCTCAGCGAGATGTCCGTGCGCACCCGCTGGCTTGCCGGCAAGGGCGCATCCGATCATTCTGCACTGCCCGTTGCCGCCAATGCCGGGGTGGTGGATGCCGTGCGCGCCAGCTGGCCGGAATGGGAGCAAACCATGCCCCTTTACGCGGTTGGTACGGATGGCAACCTGTTGACGCTTGGAGAGCATGGATTGGTCTATCGCGAGGGATCGGGCTTGCTGCGCCCGGAGGCTCTTGAAGCGCCCGGCAGTCGCCTTGCCTGAGGCCCGGCAGGGCGGCGAAATTTCACCCGGTCTCTTGGTGACGTGGGCGAAAAGGAAGACGTGTTTTTTGCCCCCAAAAACCGGTAGACAAATCCATGAGGAAATTGTCCATTCAATTCAGGCGCTTCCAGGAAGA # Right flank : AAAGAAAGTCGCCTATAGGCCTCTGAAACAGACCGCCATCGGTCATCGCTGTTCTGACTGCCACAGATACACGTATTTCCAGTGATGAAAACCAGTCATCTTCTTGACATCCTACAATCTGTGCGGATAGCGTGTCGTAAATTCAATAAAAAATTGAAGTACTCAGATAATACTGAACTTTCCGGGGGGAATGCTCTGATGTCCGTTGGCGCCTGCGCGTTCAACCTTCTTTCTGATAAGTTTTTCCCTGTGGTGACTAGGCTCGGCGCGCGCCGCTGGGTGGCGTTCGAGGGTTTGCGACAAGAAGACGGGGACTACCCGGTTGCCTTCGACTGGCCGCGGGGTGATCTGAATATCGCCGCTTTCGAATTTGCCATCGGCGTGCTGACGCTCGCCTATCAGCCCGAGGACCATGGCGACTGGACGGCGATCTGGCGGGCAACGAGCGATATCGATCTGTCGGAGCGGCTGACCGCACTGTCCTTCGCCTTCAATCTTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //