Array 1 21331-22685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKT010000021.1 Neisseria meningitidis strain 107044 NODE_21_length_39446_cov_30.370637, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21331 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 21397 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 21463 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 21529 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 21595 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 21661 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 21727 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 21793 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 21859 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 21925 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 21991 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 22057 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 22123 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 22189 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 22255 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 22320 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 22386 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 22452 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 22518 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 22584 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 22650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //