Array 1 2011735-2014074 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDGR01000007.1 Reichenbachiella sp. 5M10 scaffold2_cov78_read176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2011735 36 100.0 30 .................................... AGGTAGAAGATCTATATGAAGTAGATGGAA 2011801 36 100.0 30 .................................... CGGGTAAGCGGCCATGGATTCAATTGTATC 2011867 36 100.0 30 .................................... ACGGCAACGTGTTAGTAGTCCCTGCAACAG 2011933 36 100.0 30 .................................... ATGGAAATGTCTTAGTAGTCCCTGCAACAG 2011999 36 100.0 30 .................................... TGTTGACCATTCGCACCCTCGGCTATTCCA 2012065 36 100.0 30 .................................... GAAACCATGCTAGAAGAAATTATCAACTCC 2012131 36 100.0 30 .................................... TAATAGCTAAGTATTTCTCGGGTATGAAAA 2012197 36 100.0 30 .................................... CGCACTCGGGGTTTTTTACCCACATCTCAA 2012263 36 100.0 30 .................................... AGATTCTCAGTGATTTTCACCTCTATTTTG 2012329 36 100.0 30 .................................... CTACCATCAGGTAGTCATGAAAGAAGAAAA 2012395 36 100.0 29 .................................... TATGCAAGTTGTCATTCGCTTCTAAGATC 2012460 36 100.0 29 .................................... CGGTCATACGCTCCTAGCTTGAGCATGAT 2012525 36 100.0 30 .................................... TGTCCAGCCCTAGATGCCAAGTCTGACGGT 2012591 36 100.0 30 .................................... TCATTATAGATGCTGAGCAGCTCAATAAGA 2012657 36 100.0 30 .................................... AATGATACAGTATCAATACATGGAAACTCC 2012723 36 100.0 30 .................................... ACCAGAGACTGGATGTGATCCTGTGTACCT 2012789 36 100.0 30 .................................... TATGAAAATGCGATGTCATATTTGGTTCAG 2012855 36 100.0 30 .................................... CATAAGAAACGACAAAAAGAACTCTTTCCA 2012921 36 100.0 30 .................................... TTGATCACATAAGCCTTGATCAGTCTTTGC 2012987 36 100.0 30 .................................... AGCGATCGCAGACGAAGTTCAGTCGCGGGG 2013053 36 100.0 30 .................................... TGCTCTGTGATCATGTCATTATTCTTTTTT 2013119 36 100.0 30 .................................... TGTCGCAGCAACAGAAGAGCCGAATGGACA 2013185 36 100.0 30 .................................... TGTGCTGCTTTGTTGTACTTCAAGGTCGTG 2013251 36 100.0 29 .................................... TGACGGGGTTTCCTTAAACTGCTCACTGC 2013316 36 100.0 30 .................................... TTTCTCTCTTGATGTATTCTTATTCTCTTA 2013382 36 100.0 29 .................................... CCAAGAGTGGAAGAATAGCATTTCTACCT 2013447 36 100.0 29 .................................... CGTCAAGCAATTGGAACTGAATGTGAACG 2013512 36 100.0 30 .................................... CGCCACAGCATGTTATCGTCTTGATCGCCC 2013578 36 100.0 29 .................................... CGGTCATACGCTCCTAGCTTGAGCATGAT 2013643 36 100.0 30 .................................... TCAGATGTGCAAAATCATCCGTGAACCTAT 2013709 36 100.0 30 .................................... AGCTCAAGCAAGTGCTAGAAATCGAGCCCT 2013775 36 100.0 30 .................................... TTTAGATGCCTCACAATGGAACGACTTGCA 2013841 36 100.0 30 .................................... CCGCGTGGTTGGACCCGAATAGTACGGAGC 2013907 36 100.0 30 .................................... TCAAGTGCATGATAGTTTGACTACTGACAT 2013973 36 94.4 30 ..................CT................ CCTGGCAGGGAAATGATGAGAATAGGATAA 2014039 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.8 30 GCTGTTAAAAATACCAATTCGTTAGCCAATCACAAC # Left flank : CCGATACCAAAAAGGACAGACGCAATGCGGCCAACTTCCGAAAAAAGTTGTTGAAAGATGGATTTAGGATGTTTCAGTTTTCGATCTACCTGCGCCACTGCCCCAGTAGAGAAAACGCAGCAGTACATATCAAACGTGTCAAGATGAACCTGCCTCCCGATGGCTATGTGGGCATCATGGTGATCACCGACAAACAATTCGGTAATATGGAACTCTACTTTGGCAAAAAGGAAAAGGAATTGCCTGCTGTACCGCAGCAGCTGTCCCTATTTTGACCATAGCCTGAATCAATCGATCAAATAGGGAGGGCAATACCTCCCTAAATTCGGCAGACAACTTCGGCACGGATTGATCCCTTGTCCTCGCTGCGAACGAGAACAAGGGACACAAATCAATAAAAAACCCGACAGACTTTTGAAAACCTGTCGGGTTTATATAGCATTTTTTCACCACCCAACTCCCCTTAAAACACAACAGCACAGATAGTTACGACTACCTGT # Right flank : CCAATGAGTACAAAGTATTACAAAGGGCAGTTAAAACACCCCATACATTTGTTCATCGCAAGATATCTCTTCTCCGATCTTATCCTGAAGTTCACCTAGCAAATTCTGCAGTTCACCGAAACTCACTTGAAGACGTGAGCAAAAGCCTCTATCCTTGTCTTGTAATTGATGAAAACAACAAGCGAGTAATCAATCACAGAGCTGAAAAGCTCCACTGAAATAGAATAGTAATTTAGTCTTTCATAATCATGCTTAAGCTGCTGATCCGGACGGGATGAGCAGCTTTTCTTTTTATAGGCTATTGACAAATCCTATTGGCCCTTACGGATCACGCCGTATTTCTGGGGCATTGATCCAAGATCACTTCGAAATTCAACAGTCATGGTTCGACATTCATCATTACTTTTTTGCTAAACAACCACCTACTATGAGTCTTTGAACCAATGTATACACAATGGAAAGCATGAATATCCAATGCGCCATGTCGAATATTGATTTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTAAAAATACCAATTCGTTAGCCAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2656994-2657689 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDGR01000007.1 Reichenbachiella sp. 5M10 scaffold2_cov78_read176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2656994 36 100.0 30 .................................... TCAGCTTTGAGCGTGATCAGCTTGCCAGAC 2657060 36 100.0 30 .................................... CGGAGGCTGTAAATTCGGGTGGTCGCTTCT 2657126 36 100.0 30 .................................... CTGTGATGATGGCTAGTGCTAGACCTATGG 2657192 36 100.0 30 .................................... TGGATGTGCTTGCCATAGTGTTGAATTATA 2657258 36 94.4 30 ......A.....C....................... ACAGTGCCGCTAGAGTTTAGAAGCCTCACG 2657324 36 97.2 30 ............C....................... TCACATCGGCTAAGTTTTCGAAGCTCTTTT 2657390 36 97.2 30 ............C....................... GTGCTTGCCCAACATTGAACTTTCTATTAG 2657456 36 94.4 30 ............C.............C......... AGGTGTACTACTTTCATGTTCTTTCAGAAA 2657522 36 97.2 30 ............C....................... AAATGAATTAAAACCAGTGTATTCGACGAA 2657588 36 97.2 30 ............C....................... TCAGGTTTGATGTGAAATAGAAGGTCGTCT 2657654 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.0 30 GCTGTTGAAGCCTTCATTTTGGAAGGTAAGTACAGC # Left flank : AGATTTCAGAAGCTTTTTGAAAGACCGAAGACTCTACACTCTACTGCCTTATATATCTGACGAAGTGGTACAGTTCGAGGCTATACAACGAGAATTTGCTGCCTATCATCGATCGAGAGAGAGCGTATTCGAAAAAATACTCTCATTCGAAAAAACAGTCATTGCCCAACACAATATTCAACCTAACAAATATGGATACATAGAACATAAAGACATCCTTGATGAAGCAAGAATACCCGAAGAGCAGTACCATCAAATGATTGACATCCGCAATGCACTATGTCATGGCACATACCCTAATCCAGAAAAATTCAAAGATCAGGTGGACGGCAGTGACTTCAATGCCCTCAAGCATATAGGACTAAACGCCCCTGAGGCAAGCCAAAAATCCATCATCACACAACTAGAACAGATAGCTCTTAGACTCTATGAAAAACCCAAAAAGAACTAACAAACAAGTAACCTAACAATCTGAAAAACAAAACCTAAACGTAAGCTAT # Right flank : CACCAATACTTCCTCAAAAAACCACCTAGGGAGGCCCAAACAAAAACCCCTGTCTGGAAAGACCAAACAGGGGTTTCATTAGTTGTCAGCTCCAAGAGCTGCTCGACGACAGGGATCACCCGACGATGGTGCGCGCACTTTTGTAGCCAGCATAGAAGCTCGGGTTGCTCCACTGAAACTGCAGCATGACCTTGTCCATCTTTTCGGTGAAGAGTCCCGAGATATCATCCATCAGCTCGTTGATACTTCGTTTGGCCAGATTAGTAGCCGTCATTTTGAGCCGTGGCAGGCCGACCGTCTCTCGGTAGTCATCCACAGAGCTCGTCAGATCGGTGACCTGCGCTTCTGTGACACCATAGTCGACCAGTGCCGTCAAGTGCTCCGTGAGCAAGTCCGCCAAGTGACTGAGTCTCTCTGGCAGCTCCGTATCCCGCAGTTTGAGCACATCCGACTTGGTCAAGTAGGCGTTTTGATGCAGGTCATGATCATCAGAGACCATT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTGAAGCCTTCATTTTGGAAGGTAAGTACAGC # Alternate repeat : GCTGTTGAAGCCCTCATTTTGGAAGGTAAGTACAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //