Array 1 189854-190122 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXA01000012.1 Pseudomonas aeruginosa strain AUS483 IPC434_12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 189854 28 100.0 32 ............................ AGAAAACCTTCCAGGGGTCAGTCGGAGTTCTG 189914 28 100.0 32 ............................ AGCACCTGCAAGCCCATTCGCGGCCGCAAGAC 189974 28 100.0 32 ............................ TGAACGAGTCGCAGCGCGATCCTATCGACCAG 190034 28 100.0 32 ............................ CGGCTCTACGCCCGATTTCGCGAGCGTGAGCA 190094 28 82.1 0 ......................G.CTTC | C [190114] ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : AACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATAACTTACAAAGACATGAAAAAAGAGGGTTTCAGACCAGGAAAACCCGGTATTCCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CCCTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGCAGACACTGCCGCCCACACCCGGCATTCCCCTCACGAAACGAATAGCCTGTCCGTTCCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGAATGAGTGCAATGGACCTCAAGCGCCGCCGCGTCATGCAAGGCCTGGGCGCTGGGCTGCTGTTGCCGGCGCTGGGCGCGCCGGCGGTGATCGCCGCGCCGAATGCGCGGCCGAAGCTGACCGATGGCGTGCAGTCCGGTGACGTGCACGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGTCCGGCACGGATGATCGTCGAGTGGGACACCCGCAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGATCACCGACGAGCGTCTCGACTACACCGCGCGCATCGACCTGCGCGGTCTGCCGGCCGACCAGTCGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 371255-370567 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXA01000006.1 Pseudomonas aeruginosa strain AUS483 IPC434_6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 371254 28 100.0 32 ............................ CGGAAAATCGCCCCGCGCCGGGCGAGCATTTA 371194 28 100.0 32 ............................ ACAGCGCAAAGGCACTGATCCCCTGCGACCAG 371134 28 100.0 32 ............................ AATAGAGGGGCGCGATAGGTGCGACATTCCGG 371074 28 100.0 32 ............................ GTCTGGCCTTCCTTGGGCTCGGCTGGAAGGAT 371014 28 100.0 32 ............................ AACGCTCTGCTGGCTCAACTGATCGAGAGCAA 370954 28 100.0 32 ............................ TTCTGCATCTGATTCAGTCGACCGATGTGCTT 370894 28 100.0 32 ............................ TGGACCGTCAGCATTGGCACGGACGGCCCACC 370834 28 100.0 32 ............................ AGGCGCTGCTGCTAACGATGCTCGGCCTGGCC 370774 28 96.4 32 .C.......................... GCACCGTCGCCGCCGTGGAACTTGTCCACCAG 370714 28 100.0 32 ............................ AGTACGAAGCCGCCATGGCCGAGTGCTGGTAC 370654 28 100.0 32 ............................ AAAAGAGGGGCGCGATAGGTGCGACATTCCGG 370594 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGTGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGATATGTGATCCATACGAGTCCATTCGCGCGCGAACGGCGAGGTTTATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAAGGCCCGAAGCTTCCGACCCTTTTTTCGGACAGTTTCTTACACCCTTGAAAATCAATGGCTTGCAAAGGCTCGAAAAAAGAGGGTTTCAGGCCGGGAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCTGGGCTA # Right flank : AACGGAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTTCTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATCACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60385-61132 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXA01000016.1 Pseudomonas aeruginosa strain AUS483 IPC434_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60385 28 100.0 32 ............................ AAGCTCTTGCCACCATAGAGGCGGTGCATCTT 60445 28 100.0 32 ............................ TGGCAAGAAGCAGAACCGCGCGTCTTCTGGAT 60505 28 100.0 32 ............................ ATTGAACAACAGCAATGCCCTTCGGACCCTCC 60565 28 100.0 32 ............................ ATTCTGGACACCACTGAACTACAGCGACACCC 60625 28 100.0 32 ............................ ACCGGTTCCACCATCACCGCCACCATCCCCCG 60685 28 100.0 32 ............................ CGGACCTGATGAAGAAGCCCCTACTTCTGGTC 60745 28 100.0 32 ............................ AAGGAGGCGACGCTCCAGGCGATAGCTGCGAC 60805 28 100.0 32 ............................ ATCCGGCGTATGTCATCCCGACAAGCGCCATT 60865 28 100.0 32 ............................ TGGACGAGTGCCTGGCCGCCGCCGAGCAGATC 60925 28 100.0 32 ............................ TGGATCGTGATGATCTTGCGCCACTGTCCGTC 60985 28 100.0 32 ............................ AAGGCCGAACTGCGCAAGCTGGCTCAACCCAA 61045 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 61105 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGACGCTACAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGGATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGCGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70420-69673 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXA01000016.1 Pseudomonas aeruginosa strain AUS483 IPC434_16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70419 28 100.0 32 ............................ TCCAGCCACTTGGCCGTGCCCAGGTTGTCTGC 70359 28 100.0 32 ............................ ACCGGCGTGACCATGATGACGATGGCCTGGAA 70299 28 100.0 32 ............................ AATGCGATCAGCGACGACCCGACCCTGAATCG 70239 28 100.0 32 ............................ TGAAAAATAGCCATTAAACGACCATGGACGTT 70179 28 100.0 32 ............................ CGATCGATGACCGCCTCGGCGGCCGCGCACTG 70119 28 100.0 32 ............................ AACTCCAACGCCGCCTTGGTCTGGGCCTTGAA 70059 28 100.0 32 ............................ ATCCTCCCAAGCTCGCAACCAGCGAACAGCAG 69999 28 100.0 32 ............................ GGAATGCAGTTGCCCGAGCGGCGGCGCCTCCC 69939 28 100.0 32 ............................ TGGAAATCCTCCGCCTCCGGCGCCACCACAAT 69879 28 100.0 32 ............................ AAGGCGCAGGCGGTCGTCGTTGCGGTGGGGGT 69819 28 100.0 32 ............................ ATAGACTTGCCGATCTCGGCGGCTGCGCGGAC 69759 28 100.0 32 ............................ CGTTGATCTAATGCGGATGCGGGTGGAAACAG 69699 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAACGTCCCCCCGCTTCATCCCGCTGCTGCCCGCCTCGCAGGCCAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGGTCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATACCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //