Array 1 8124-8446 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANOJ01000057.1 Leptospira interrogans str. UT126 ctg7180000006067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 8124 35 94.4 37 ..-..A.............................. AAGATCACAAAATCGGAAAGCACGGATATACAATTTA T [8132] 8197 36 100.0 35 .................................... CTCTTTTTGCCACTTCGTATAAGAACCGATAGGGA 8268 36 97.2 35 ..............C..................... CATAAACAACTAGAATTTCTCATATCGGCAATTAG 8339 36 100.0 35 .................................... TAGATAATCAGAAGCAGAACCGGGCATTTTTTAAA 8410 36 75.0 0 ......................CG.T..T.G.AAGT | T [8430] ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 93.3 36 GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG # Left flank : CCAATAAATTTTAAATGGTAGCAGCTTTAATTAGGGATCTATTTTTCTTAAATCCTCAAAAATTTCGTTTTGTTCTTTATCATCTACCCAAGTTCCCAAAATCCAATCTAAATCATGGTTTTCCGACATTTCTTGATTTAAGTTTATTCCTTTCTCTAAAAGTATAAGGATAGCTTCATTGAGGTTAATTCCCTCTCTTTTTGCAAATTCTTTCAATTTATAGTGCATATCCTTCGGTACATTTCGAATTGTATAGGGATGCAGCGGATCGTTCATACGAGTAGTATGAGCTTTTTTGTTGGCAGGTCAATTCAAATGCGTAGACACATACTGTTGGCGTAAGTTCGATTCAAAAAACTTAGAACCCTCTCTTTTTCAAAGTGGGAGTTCCCACATTTCTTTGAATAAAATACTGTTTTTCGGAAAAGCAGTAGTTCCTACATTTTATCTGTTTGCACGTTTGGTGCGAAACAATTTGGGCTAAAACAAATCTTCTCCTC # Right flank : TTTGACTTAAGAGACGCAGAAACCTTCTTTTTTTCAAAGTGGGAGTTCCCACATTTCTTTGAATAATGAAGTAGTCACATAAAAGTGGACAGCCATTTAAGCAATATTTGTCTCAAATTCTTCAGGGCTGATATAACCTAATGTAGAATGAAACCTGAATCTATTGTAATACACTTCGATAAAATCGAATAGAAGATGTTCCGCTTCTTCAATGTTATAGAATGTATTGTATTCGATTTCTCTTTTTAGAGAACTAAAGAAAGACTCTGCCACCGCATTGTCCCAACAATTTCCTTTTCTGCTGTTGCTTCGTCTGATACCGTTGGCAATTAGTAGCCTACGTGTTTCTTTAGAACAGAAATTAGAACCCCGATCCGAATGAAAGATCAATCCTTTCCGAGGGTTTCTTGACAACACTGCTTTTAATACCGTATCACATACCACTGAGAATCATTACGATGGAAAGCGACCAACCCACTGTCTTGCGTGAATACAATCCA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 823-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANOJ01000067.1 Leptospira interrogans str. UT126 ctg7180000006177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 822 36 100.0 37 .................................... TCTCCAGCGTATTGTTGATGCCGGTGTGGAATTTGTC 749 36 100.0 35 .................................... TCCCTCTCTCGCCAGTTGCACCAAATCTATACTAG 678 36 100.0 35 .................................... AGTCGCAAATCTTCCTATTAGTACAGCAGGATAAA 607 36 100.0 35 .................................... TACAAGACTATATCACTCAAAACAGTCTCTGCGTC 536 36 100.0 35 .................................... GGAATCCGGTGGGAACGTTGCTGGTTTATTTTGGA 465 36 100.0 36 .................................... ATTAGTTCGGATTCATTGAGTTCAAAGTCTCTTCCC 393 36 100.0 34 .................................... GATTAAGACAATTTGCTTTTTATGCTGAACAACT 323 36 100.0 39 .................................... TGAAGGATTTGATCCGTTTGAATTCCTATCGGAGAAAAT 248 36 97.2 35 .....................G.............. GATCTTACGTTATCCTTGGAGGACTTGAACCGTCC 177 36 94.4 35 .................A...G.............. ATCGGCCTTGATCCGAATCGACCCGAAAATCGGAT 106 36 91.7 0 ..............................T..A.T | G [77] ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 98.5 36 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : AATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATTGATTGCCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : TGAAGAAAAGATCTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //