Array 1 81071-81891 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAE01000009.1 Salmonella enterica subsp. enterica serovar Cubana strain 03-0180 NODE_9_length_156888_cov_3.44968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81071 29 100.0 32 ............................. ACCGGGCAAAGCCTGTTCTACCTCGGCGAAAC 81132 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 81193 29 96.6 32 .............T............... GTTAATTTGTTTTTGTGGGGAATTATTGTTGG 81254 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 81315 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 81376 29 96.6 32 .............T............... GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 81437 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 81498 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 81559 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 81620 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 81681 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 81742 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 81803 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 81864 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91930-92996 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAE01000009.1 Salmonella enterica subsp. enterica serovar Cubana strain 03-0180 NODE_9_length_156888_cov_3.44968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91930 29 100.0 32 ............................. AATCCCTCATTCCGTATCGCGCCAGCGTGTCG 91991 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 92052 29 100.0 32 ............................. TGAGAGAGTTATTGAAAAAAGATGGCTATTTC 92113 29 100.0 32 ............................. GCCGCGAGTACGGTTTTAAAGGTGAGTTTGAA 92174 29 100.0 32 ............................. AATTGCCTTCCATGCGGCGGGCTCGCTATCAG 92235 29 100.0 32 ............................. GTCTGCCTAATATCAAAATGGAGGTATGGGGT 92296 29 100.0 32 ............................. CTGATGAGTTACGGCCCATTAAACGGGGGGCA 92357 29 100.0 32 ............................. AAGTAATAATAGAAGCAGGAGCAAGCACAAAC 92418 29 100.0 32 ............................. AGAGCGAGCACGTCCGCCGTAAAATTGCCATG 92479 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 92540 29 100.0 32 ............................. GCGGTTTTTCTAATGCTGGCGTGGTATTAGCT 92601 29 100.0 32 ............................. GAACGACAATAAAGCATGTGGCAATTGCGCCG 92662 29 100.0 32 ............................. CAGGGCAAATACATCCGCCGCTGACCACTGGT 92723 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 92784 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 92845 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 92906 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 92967 29 96.6 0 ............T................ | A [92994] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTTCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //