Array 1 32899-35210 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYGS01000130.1 Acinetobacter baumannii strain XH764 XH764_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32899 30 96.7 30 .............................A ACTATCCACCTAGAAAAATTATTCGTAAGA 32959 30 100.0 30 .............................. AGTAAAGGCCAAGACTACACTCTAAAAAAA 33019 30 96.7 30 .............................C AGGGCGACTGCAAAAAATACTTCTGGACTA 33079 30 93.3 30 ............................AG ACTATCCAGAAGGTGAAGTGCCAGATGCGA 33139 30 93.3 30 ............................AG TCTGATATTTCGCCTGATCAATGCGGCCAA 33199 30 100.0 30 .............................. TCACTAATTCGCTATTAAGATTCATTCTTT 33259 30 96.7 31 .............................A TGTGCAAAATATCAAAAGAAGCCTTATTCTT 33320 30 96.7 30 ............................G. GTATTGAAGTTATTTGATGTTACAGATCCA 33380 30 96.7 30 .............................A TTGACTTAATAGTTAGGAGTGCCTAATATT 33440 30 93.3 30 ............................AA TATTTTTTTTGTAATTACCAGTTTTCTTGG 33500 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 33560 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 33620 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 33680 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 33740 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 33800 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 33860 30 96.7 30 .............................G ATTCAGTAGGTGCTAACTGGTATAACTTGA 33920 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 33980 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 34040 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 34100 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 34160 30 96.7 30 ............................A. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 34220 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 34281 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 34341 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 34401 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 34461 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 34521 30 96.7 30 .............................G TAAAACCGAATCCCAAGCTGAATAGGTTTT 34581 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 34641 30 100.0 30 .............................. GTTGCGGCTCTCGCATGATGTGGTTTGATC 34701 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 34761 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 34821 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 34881 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 34941 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 35001 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 35061 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 35121 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 35181 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 39 30 94.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATCTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25647-21176 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYGS01000087.1 Acinetobacter baumannii strain XH764 XH764_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25646 29 100.0 31 ............................. ATTAAAAATCTATTGTAAAGTCTTTTGTTCC 25586 29 100.0 31 ............................. AAACGGATGCTACGTCATAAGGCTTTAATTC 25526 29 100.0 31 ............................. ACAGCAGTAATCGCAGCAGTACCGTCAGTTG 25466 29 100.0 31 ............................. ATGTATGTTTATTTTGATGCAGGCGGTAAAA 25406 29 96.6 31 ............................T AGGGGCATAAGGTGTTGAGCTGGATGCATTG 25346 29 100.0 31 ............................. ATGAGTTTTCAAACGAGGTTTGTGAGCTTAC 25286 29 96.6 31 ............................G ACCACATGTCGATGAATACAACTATGTTGAT 25226 29 100.0 31 ............................. TCACGCAAATTCACCGCGCCGTTTGCACAGC 25166 29 100.0 31 ............................. ATGCTTCAATCCACTCTTGATCAGTGTGACC 25106 29 100.0 31 ............................. GATGTTGTACATGATTTTTCAGGACAACCGT 25046 29 96.6 31 ............................T CTCTAAATAATGCAGGCATTAACTGCTACAA 24986 29 96.6 31 ............................C GTTACAACTTGCAGCACCCACTGCAAATTTA 24926 29 96.6 31 ............................T CACTCACAAGCGGCTCATTCTAATAGCTCGA 24866 29 100.0 31 ............................. CCAAGAGCCTTTATGAGATCAGCGTCGTTCA 24806 29 96.6 31 ............................T GAATACATTCTTGAGCATGAGTCAATGACGG 24746 29 96.6 31 ............................T ACTGGAGTGCCGACCAGTGGAACATGCCTTC 24686 29 96.6 31 ............................T TCTTCTCGAATAGTCACAAAACGGCAGATGT 24626 29 100.0 31 ............................. ATTGCCTTTATGTTCGATGTTTGGCATACGG 24566 29 100.0 31 ............................. ACAACTAAAGTGCAGGCTCTATCGAAAATGA 24506 29 96.6 32 ............................T GAACAGGTGATCGCTTTGTTATCTGCCACGAT 24445 29 96.6 31 ............................T CCACCATAGATTTTAATGTTCTTGTGTTGAC 24385 29 100.0 31 ............................. ACAAGGAATAGTACAACTCCGATCAGTGACC 24325 29 96.6 31 ............................T GTGTAAGCTTGCCGCCTGCAATAACTCGTGC 24265 29 96.6 31 ............................T TGTAACGTTTAGTAATGGCTTCCTGCTTAAG 24205 29 100.0 31 ............................. CCCCGAAGTCACGAATAAACTGTTCTGGTTT 24145 29 96.6 31 ............................C TGCGAACAATCGTGTTATTTATCATGAGCAA 24085 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 24025 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 23965 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 23905 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 23845 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 23785 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 23725 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 23665 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 23605 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 23545 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 23485 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 23425 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 23365 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 23305 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 23245 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 23185 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 23125 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 23065 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 23005 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 22945 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 22885 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 22825 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 22765 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 22705 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 22645 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 22585 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 22525 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 22465 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 22405 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 22345 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 22285 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 22225 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 22165 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 22105 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 22045 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 21985 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 21925 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 21865 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 21805 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 21745 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 21685 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 21625 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 21565 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 21505 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 21445 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 21385 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 21325 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 21264 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 21204 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 75 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGCTTCAAGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31203-31709 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYGS01000087.1 Acinetobacter baumannii strain XH764 XH764_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 31203 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 31257 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [31262] 31315 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [31333] 31382 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 31442 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 31502 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 31562 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 31622 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 31682 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //