Array 1 95429-94240 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFRO01000004.1 Escherichia coli strain JML163 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95428 29 100.0 32 ............................. CGCTGGAAATATTATCCAGCCTGAAAATTAAT 95367 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 95306 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 95245 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 95184 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 95123 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 95062 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 95001 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 94940 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 94879 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 94818 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 94757 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 94696 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 94634 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 94573 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 94512 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 94451 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 94390 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 94329 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 94268 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122136-121131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFRO01000004.1 Escherichia coli strain JML163 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122135 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 122074 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 122013 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 121952 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 121891 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 121830 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 121769 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 121708 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 121647 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 121586 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 121525 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 121464 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 121403 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 121342 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 121281 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 121220 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 121159 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //