Array 1 579075-578377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYP01000001.1 Bifidobacterium bohemicum DSM 22767 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 579074 33 100.0 33 ................................. TATGGAACGCGGGCGGCAGGATCATCGAGGGTT 579008 33 100.0 33 ................................. AACTTAGGCAGCAGGCGGCGACACATACTTTGT 578942 33 100.0 33 ................................. TACCGGATAAAGAAAAACGCCGCAGCTCGAACC 578876 33 100.0 35 ................................. AACAATGGCTAGTGAGATGTCGGCGGCTAGCGCTT 578808 33 100.0 33 ................................. GAAAAGGGACTTATCAGCGAAATAGCTGAAGCC 578742 33 100.0 34 ................................. ACCCGAGACGGCATAAGCAACCACATGAGGACGA 578675 33 100.0 33 ................................. TGATCGGCCGACACCTCGTCGACGATCCAGGAG 578609 33 100.0 34 ................................. AGATCCGCCGGCTGCGGGTCGCCCTTGACGGTCT 578542 33 100.0 34 ................................. TAGACATGACGCAAATCGTCGGCGGGGACATCGT 578475 33 100.0 33 ................................. AGGGCAGGAATACGAGGCTACTTTGCATGGCTG 578409 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 11 33 100.0 34 GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Left flank : GGGAGCGTGGATTGAAATACAAACCCCTCATAATCATTAAAAACCTCTTG # Right flank : AGCGGGTTYGACACCTCGTTGGTCTGTTTGCGCGTCGCTCCCTTCACGGGGAGCGTCGATTGGATCAGCACATGTTGGCGGCTGTCCAGTTGACTCATCTCACTGACGGCAAGCAGTACGCCTTGAATGCGGTGGTGGCGAACGCCATCACCCGGAATATTGGCAGTTCGGAGTCGATGACGAGGACATGCCCACCATCCGCGAACTGCTCGGGGTCTTGCGCAACACGTATCCGCGCAACCTCATCCGCAGCGCCTACTACGACGCCAAGGAACGGTTCAGCGACTTCGACATCGGCATCCCTGACCAGATCAAGAACAAAGTGCGGGCGATGATCGGCTGACCGGAATTTGCGGTGCTCCCATTGTCCGACCTGAGCGATTTCCAAGGGTTCAGCATGCCAAGCGGGCACGACGACCACGGCATCGAGAACATGTTCGAGGACAACGAGCTCGACGCGAACGCCGGCGAGGCCATCGTCGGCGCATACAAGCACTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 273631-274131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYP01000005.1 Bifidobacterium bohemicum DSM 22767 Contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 273631 33 100.0 34 ................................. ATSCCGCGAGCTCGAAGCTCAACCCGTACAACAT 273698 33 100.0 35 ................................. CATACCCTTATTGTATCTCACAGGCTACACTATGT 273766 33 100.0 33 ................................. TACTGCCCCCAATGTGGCAGACACCTAAAGGCC 273832 33 100.0 34 ................................. ATCCAAACCGAACCATGCCAATACTGCGGCAACC 273899 33 100.0 35 ................................. CAGACCATCGCCAAGGTAATCCACGCCCTCGGCGG 273967 33 100.0 33 ................................. GCGATCCAGTGGCAGTGTTTACTGGGTGTGACG 274033 33 100.0 33 ................................. CCACGGGTCGCGGTTGGTTGGAACCGGTCGATT 274099 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Left flank : TGGCCAAGGCTTGCATCAAATTTGGTCAGCGTGTTCAAAATAGTGTCTTCGAGTGTCTTGTTTCGCCTTCCGATTTGCTTATTCTAAAGGATGAGTTGACTCAAATCATCGATCCGGAGCAGGATAGTTTACGGTTCTATAATTTGGGTGCTAAATATTCGAACCGGATCGATTATATTGGGCAGGTTCGGCATCTTCCTATGGACGAGGTCATGATGATTTGAGGTAAACCGTTCTGGAGACAGATTCTATTTTGTCGGATAGATGCGTGTGTCGAGAATCGTCACTGGGTGCGAAAGTAAAGCGCTCATGATTTCCTTGGAGGTTCGCACCTTCCGGGCATGATATTTTTCGGATTTTCATTTTAAGTGATAAGTTCGATGGCTGCTTGATAACATAAAAGAGTATTAAAGGCGACTCCGTTGAGACAAAATCGTTGGAGTCGATCAATGCTACAATGGGCATGTTCATATTTTGAAATATTTGATTTCAAATGTGCA # Right flank : GTTCCCCTGCGGCTCCTGTGCCTCGTGTTGAGCGGTCGCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //