Array 1 71773-68847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYR010000011.1 Bifidobacterium longum strain MSK.6.34 NODE_11_length_106531_cov_465.717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 71772 36 100.0 28 .................................... TCACTGTACAAATACGATGTATGCTGTA 71708 36 100.0 28 .................................... ATTGCGAGGAGTGCACGGAGGACTGGAC 71644 36 100.0 29 .................................... GCACGGCACGCCCGACATATCCGGCGACA 71579 36 100.0 28 .................................... GGAACGCCGGAAGGCTGTTCTAGCGGCC 71515 36 100.0 28 .................................... GACTGCTCCCAACCGTTCGTCAAGGCCG 71451 36 100.0 28 .................................... TCTTGTCTGGTCTGTGGACTGGGCAAGG 71387 36 100.0 28 .................................... TGAGAGTGCCGTTGTTCGCGGCGATGAG 71323 36 100.0 29 .................................... GCTCCCCTCGGGGAGGGGAGCCAGGGAAA 71258 36 100.0 28 .................................... CTCAGGCTGCCCTTGCTGCCGACATGGG 71194 36 100.0 28 .................................... CCGGGCGTAGCCAGAGCGCCATGAGCCT 71130 36 100.0 28 .................................... AAGAGGAGCAGCAAAGGAGGGGGCGAGC 71066 36 100.0 29 .................................... CTTCCTTTCGTTTAAGGTATGGCCCCAAT 71001 36 100.0 28 .................................... TGTTGGTGCGCCCGGTTCCAGTGCGTAT 70937 36 100.0 28 .................................... CTGTCGTCGGCGAGCATGTCGCTGCCGG 70873 36 100.0 28 .................................... GCAAGGATAACGTACAAATAAAAATCAA 70809 36 100.0 29 .................................... ATTAAGGCGCACGCCTATGAGGACGACGT 70744 36 100.0 28 .................................... GCGTTTTTGGGTAGGTTACGATTGTTGG 70680 36 100.0 28 .................................... CAGTTCACCGGCGACAACGTGAACCTGG 70616 36 100.0 28 .................................... TGATGTCTCCTGTTGTGATTCGGTTTAT 70552 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 70488 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 70424 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 70359 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 70295 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 70231 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 70167 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 70103 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 70039 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 69975 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 69911 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 69847 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 69783 36 100.0 29 .................................... TTGTCGTCCATCTCTGTACCTCGGTTTCT 69718 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 69654 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 69590 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 69525 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 69461 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 69397 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 69332 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 69267 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 69202 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 69138 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 69074 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 69010 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 68946 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 68882 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 46 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //