Array 1 450374-453151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038498.1 Pectobacterium punjabense strain SS95 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 450374 29 100.0 32 ............................. CACGTTCCGCATGCCCTCGCCACATCGACGTG 450435 29 100.0 33 ............................. ACAGTGCCACCGCGTTGGGGGTAGGCCACAATC 450497 29 100.0 32 ............................. TCAGAATTTAGCTTTTCAAACGATCACATGGA 450558 29 100.0 32 ............................. CGATCCATAAATTCCCGTTTTGCGTCTATTGC 450619 29 100.0 32 ............................. AACAGCAAGATGAACGTTTAACCCATCAAGAC 450680 29 100.0 32 ............................. TCATAATTCCATGCAGCGGCATTTGCTCAATC 450741 29 100.0 32 ............................. GTTTCAGGTTTGTATATGGTTTGCTGGAGGCG 450802 29 100.0 32 ............................. CGCCTGTTGGTAAATTGCCAAAAATGGATACA 450863 29 100.0 32 ............................. AAATTCTGTAGCCTGTTGAGAATGTTCTCGTC 450924 29 100.0 32 ............................. TATGCAGTGCCGTGGATATCAGTTCGAAATCG 450985 29 100.0 32 ............................. GGTCTTTATCATTGAATGCTAGCCAGAGAAAA 451046 29 100.0 32 ............................. CAAGCAGAATATGTTGACCTGTTAAATAAAAC 451107 29 93.1 32 A...........................A TTTTGCGACTCAGCGGGACCAGATGAAATAAC 451168 29 100.0 32 ............................. GGTAAATCATAATTTTCGTAATGCGAAGGTCG 451229 29 100.0 32 ............................. AAATGGCGAAGAAATAAAATTCGACATGACTA 451290 29 100.0 32 ............................. CAATTTTTGAGCTATACACGACCATGACTCTA 451351 29 100.0 32 ............................. CACCGTTGATCCTAACGTTTCGTTCCATGGAA 451412 29 96.6 32 ............................T GCATCGTATGAAAAATCAAAGCGCGGCGTTCT 451473 29 100.0 32 ............................. GTCTATGTGATGACATGGCTCAAGCGGAAAAC 451534 29 100.0 32 ............................. CGCGGTAACAGTAATGTCGGTCTGGAGTTCGT 451595 29 100.0 32 ............................. CGTAGGAACCGGATCTATGTGAATCGCTGGCG 451656 29 100.0 32 ............................. AGCAGGAGATTCTTTTCGGGGATGGGACCGGG 451717 29 100.0 33 ............................. GATAACCTCAATTTCTTCCCTACCCCGGCAAAA 451779 29 100.0 32 ............................. CACAGATAGATTTTTCTGTTGGGCGCTTACTA 451840 29 100.0 33 ............................. CTGATTTCCATTTTCATCAAATCCGTTTGTTAC 451902 29 100.0 32 ............................. TAGTGATTATGAGCACCATTACAGACCCTGAA 451963 29 96.6 32 ..G.......................... TGTCAGCGGATCGGACGGTCGGTTTTGGGAGA 452024 29 96.6 32 ..G.......................... CGCAGTTCATCCATGTACGCCGCCCAATATTC 452085 29 96.6 32 ..G.......................... TGGGCGCGGTATAGTCATGAATCCTCATGTAG 452146 29 96.6 32 ..G.......................... TGGGCGCGGTATAGTCATGAATCCTCATGTAG 452207 29 96.6 32 ..G.......................... CGGGGTCAGAAAAAGACCACTACGCCCAAGAC 452268 29 96.6 32 ..G.......................... TCTCCGCGCCCCATGTGTTTTCGTAGGAAAAG 452329 29 96.6 32 ..G.......................... CGTTTAGGCGGGAACGGCGCAAGGCCGCTATA 452390 29 96.6 32 ..G.......................... TCTGATTTGTTCAATGCGGCCTCTGTTTTGGG 452451 29 96.6 32 ..G.......................... AGGTAAAGGCAGTATCGATTATCGGTTTATCC 452512 29 96.6 32 ..G.......................... ATAATCATTAATGTCCGGCTGCGCTGGTAACT 452573 29 96.6 32 ..G.......................... CGTTTAGGCGGGAACGGCGCAAGGCCGCTATA 452634 29 96.6 32 ..G.......................... ATTAATTGCATAGACCGGGGGGAATATGCACC 452695 29 96.6 32 ..G.......................... CTTGCAGGCTTGCGATCTCTCTCAAATAAAAA 452756 29 96.6 32 ..G.......................... TCTGATTTGTTCAATGCGGCCTCTGTTTTGGG 452817 29 96.6 32 ..G.......................... ATAATCATTAATGTCCGGCTGCGCTGGTAACT 452878 29 96.6 32 ..G.......................... TGAACACGACGATCGCCCAGCCAATTGCGCTA 452939 29 96.6 32 ..G.......................... GGGGAAATATCATCCGGCGTGCATATTCGGGG 453000 29 96.6 32 ..G.......................... TACCAAAAATTGGGGATGATAAGCACTCGGAG 453061 29 96.6 32 ..G.......................... GCGTATGAGGGGCAGATTTCGACCACTGATGT 453122 29 96.6 0 ............................T | A [453145] ========== ====== ====== ====== ============================= ================================= ================== 46 29 98.3 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCGCAGCCGCCCGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTGGTGACGGAAAATGTCCCGCCGCGCTTGCGCGGCAGGTTGGCGGTGTGGTTGCTGGAGGTTCGCGCGGGCGTGTATGTGGGGGATACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCTGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGTCGAATGCCGGTAGATCTGGACGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAGTCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCGAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACATCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATCGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGCTGTGTTGTAAAGAAGGATGCGCTTTCCTCCTTAGTATGTCGTCGTTGTCCTGCGCTTGACTTCAAGAAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 456112-457789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038498.1 Pectobacterium punjabense strain SS95 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 456112 29 100.0 33 ............................. GCGTTACAGCAAAACGTATTGCGGGTGCGTTGC 456174 29 100.0 32 ............................. TGCGGGTTTTCTCAGTAATAAATGGGAGTTTT 456235 29 100.0 32 ............................. CAATTCAACCGTGCTTTCGCAGTCGTTGCCCC 456296 29 100.0 32 ............................. GCTCAGTAGCACAGTCCGCAGCGCGTAGTAAT 456357 29 96.6 32 ............................T TTGTGCCACTCAAATACGCCAAATTCAAACCC 456418 29 100.0 32 ............................. CGCTCGTTAGGGGTTAGAGGGAAATAATGAAA 456479 29 100.0 32 ............................. ATATTATCGACCCAACCCCCGAACCAAAAGAT 456540 29 100.0 32 ............................. GGTCTTTATCATTGAATGCTAGCCAGAGAAAA 456601 29 100.0 32 ............................. AGGTTTGTTTAACCCGGTGCCGCCAAAGAAAA 456662 29 100.0 32 ............................. AAATCCCAAGGCTGGATTAACCGCCTGAAAAC 456723 29 100.0 32 ............................. ACGACCCTCCTGTCGGCAAGTTCTCTGCCACG 456784 29 100.0 32 ............................. CGGTTTCTATTATTAACGAAGAGCGAGATAAA 456845 29 100.0 32 ............................. CATTCAGGGTAGGAGATGAATTCCTGATTACG 456906 29 100.0 32 ............................. GATGACTTCACCAACTCCTACGCTAAAATTTC 456967 29 100.0 32 ............................. TGGCTCTGTTGCTCATCAAAGAAAAACGCCCG 457028 29 100.0 32 ............................. TAATAAAGGTTTTCGTTAACTTTTGATTTCAA 457089 29 100.0 32 ............................. AAAAATTCAGTCCTTATGAACTTATTATCGAA 457150 29 100.0 32 ............................. TTTTTCTTCTTGCTCCATCAGATAACGGGTAT 457211 29 100.0 32 ............................. ATAATGCGTCTTTAATAAAGGAGAGCATGACA 457272 29 96.6 32 ............................A GTGGTGTGATGCATGGTATCTTCTGCGCTGCC 457333 29 100.0 32 ............................. TGCCGTTGGCGGTTTTCAGTAGTCGCTGCTGT 457394 29 96.6 33 ............................A GCGCAGTAAAGGCGCACATCACAGCGTTAATAA 457456 29 100.0 32 ............................. CGAGTTATACAACTCTAAACCTAAAACCCTTT 457517 29 100.0 32 ............................. TAAAGTGCGGCTAACTTAGCCACACTTGATTT 457578 29 100.0 32 ............................. CGCCTCGCCAGATCGCTTCCTGATACAGGAGC 457639 29 100.0 32 ............................. AACCCTGTGTGTCGCAATGACAAAGCGTTGCT 457700 29 96.6 32 ................T............ GTCTGCGCCGCCCGTTGCAGGTGTGCTCATAA 457761 29 93.1 0 ............T..............G. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGCTAATTATTTCCTGAATTACTTCACTTTAGTGAATATGTACTGATTACCTTCCATTTATGCCAATATATTTGTAATCATTGAAAATAGAGTGTGAAAATATTTTCGTATTTATGCGTTATATCGATATGAAGTTACGAAGAAAGTGTTAACCATTGGCGTATTACCGCATCATAAAAAATGAAAGTATAATCCTTGCTGTATCGCGCTGTGTCTAATTCAGTGACGTGATGTTTTTTCAGATGCTTGATATCAACGTGGAGGAAGCATGTATATCAGTCCTGAAAACAGAAACTTTGTCGCTGCGCTTACGTTGGTGATGAGTATCGCTAAATCTGGGGTGAAAACTGCCGGATACCGGTAGATCGGGGTGGCTCACGGTTACTCTCTTTTTCACCTTTTTAAAATCAATAAGTTAGCTATTTTTAACAACATGGAAAAATTGGTGGGATTTTTTCTGCTGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGTATGTTGGTCTAAATATTCCTCGTGCGGAGTCAAATCCCGCTTCTGGCTGGCGTGATGGCAGATTGCGTGTCAGTATTACAGCATGCTGTTTTTGTGCTCACCGTACTGGTGAGGTACGATGCCAATAATGTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCAAAGCGTTCCACAGAACATGCGGAAAAAGTGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGCGCTGTTCCTGCTGGTCAGACGACGCGCTATGATTTCACCCGCATCAGCCCTGCTGAACTGTATGAAACGGTTGGTAGCCTGGTTAGCAGCGGGCAGTTGGGGCGTGAAGACGGTTCCGCGCTGCTGGGTTTTATCTCGTCACCACGAGCGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCGATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3842591-3842738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038498.1 Pectobacterium punjabense strain SS95 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3842591 28 100.0 32 ............................ ATGCTAACCATCTACATCACAGAGCTAATAAG 3842651 28 100.0 32 ............................ TGACCACGCCGGGCACCCGACCGTATACCGGG 3842711 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGATATTTGAAGAATGCTCCGGCAATATCCAAGGTGCTTTACGACAATAAACAGAATCCAATAAAAGGGACGCTCGGGACCAATACGTTTGTGGCACGCGTGCAGGGCGGGAAATTAAAGTCCAACAACGAAATTAGAATAGCGACGTTATTTCGTGATGGCCCGGAAGATTTTCTACGCATGATCGTGATACACGAACTCGCTCACCTCAAAGAAAAAGACCATAACAAAGCGTTTTACCAGCTCTGTTGCCATATGGACCCAGACTACCATCAGTTGGAATTTGATATGCGAATCTGGCTCAACTGGCGAGAAATGGATACCACTTCGGTCTAAAAGCCTCTTTTACTACCCAGCACAGCTACGTTCTTCTATTTCTATACTACCTGTACGGCAGTGAACACGGTTCAACGGCATTAACGCTTTATTGCTCTTTTCTAAGCTGCCTGTACGGCAGCTTAGAAAAAGCACAGACACCGTTACGCCGGGTGGCAACCC # Right flank : AATCATCTGTTTAATTGCACCAACTATCATCTTATTCACTGCCGTGCAGGCAGGTATTCTCGGGATAAATCGCTGGCGTCACTTATTGGGCGCTATTCCCCATTAAGCGTGACGACCAGCGAGCGGCTCCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATACCCTGCCAGGTGCCGATGTTCAGGCGCCCATTGGTAATGGGGATCGTCAGACTGTTACCCAACAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCGTAAACATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTTTCATTCATCGTTAGTGCCGCCGAGGTATGTTTGATGAATACATGCATCAGTCCAACGTTTATCTGGCGCAGCGCAACAACCTGCGCCAGTATTTCGTCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //