Array 1 9846-9085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGD010000003.1 Dickeya zeae strain A661-S21-A17 A661_(paired)_trimmed_(paired)_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9845 29 100.0 32 ............................. GATTATTCGTGCATCAGATACCGGGTTTGCAG 9784 29 100.0 32 ............................. GAGGTGACTGACTTTTTAGAGAAGGAAAAAAA 9723 29 100.0 32 ............................. ACGATCCAGAAATGGAATTTAGCGATTTCAAT 9662 29 100.0 32 ............................. AGATCAATTCAATGGAGCGCCGGGCGCAAAAA 9601 29 100.0 32 ............................. CGACCCGTTAAATCTTTACCGCAATAGGCGCA 9540 29 100.0 32 ............................. CAAGGGGATGAGCACGCTAGAGGATTTAGAAT 9479 29 100.0 32 ............................. AAATCACTATTGGTGCGTCCAGCGCGGTAATT 9418 29 100.0 32 ............................. CGCCTTGTTCGCGGATCGTTGTTTGTGATCGG 9357 29 100.0 32 ............................. AATAGCGATCCGCGCGTCTTCCGTCAGGAGTT 9296 29 100.0 32 ............................. ACCATTGCCGCGCCGGTCATTGCCTTGATCCC 9235 29 100.0 32 ............................. GAAATCGATTCGGTCAGCCTGCCGTTATTACA 9174 29 96.6 32 ............T................ ATCAGCTCCAGCGTGTTTTTCCAGCCGCCCAG 9113 29 82.8 0 ............TT...........G.GT | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACGTCGGTAGTAATGCCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAATCACCACCTTTATTTATCAATCGGTTAGCGCTCTTTAATAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TGCCGTGATAGCACGGCACAATCCGTCGCGATGTGTTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACTACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAACGCGGCCATCGCTTATGGTGCTGACGAGGTCGACGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 345993-345046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGD010000003.1 Dickeya zeae strain A661-S21-A17 A661_(paired)_trimmed_(paired)_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 345992 29 100.0 32 ............................. TCTGCTGGCCGCCGGGAACGGCTGTATCTCAT 345931 29 100.0 32 ............................. CTTTTGCATCTGCAGGTAACTGTCGGCTGGAA 345870 29 100.0 32 ............................. CTGTTCCGTCGTCAGTGACTTCTTTTTTTCCA 345809 29 100.0 32 ............................. AGCGGTATCTCCACTGTTCGACAGGTTTCCCC 345748 29 100.0 33 ............................. CGTAGCGCGGCCACTGGTATCCCTGTTCCCGCG 345686 29 100.0 32 ............................. GGTTTGATAAATTCAGTCTTTTTTCTATTGGC 345625 29 100.0 32 ............................. GTTTGGGAACAAAAGAGGAAATCTGTCGGTCA 345564 29 100.0 32 ............................. ACGAGGTGAACAGTGGCAGCTAACTATTTACA 345503 29 100.0 33 ............................. GGGCTGGGGAGGCTGTTCAGGCTATCCGAAATC 345441 29 96.6 32 .....................C....... TTTGAATAGTGCTGACCGAATCCGAAGGGTTT 345380 29 100.0 32 ............................. TTGTCCAGAATTTGCTTGCGCAGGTGATCGAG 345319 29 96.6 32 .............T............... TCTTGGGGTGTGCTGCGTTGACGGACTGGAAT 345258 29 100.0 32 ............................. CACGATGTCAGCAGCGGTGAGGCTGGCTCACT 345197 29 96.6 32 .....................G....... CCGGTTAGGTCACTGCGTGCAAGCGTGCAGCA 345136 29 96.6 32 .....................G....... CGTGGGCCGAATTTGAACTTGAGCACCGCAAC 345075 29 96.6 0 ...........................A. | G [345050] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCTGCCATTCCCGAACCGGCACCCTTTGGTGACGCTGGGCACCGGGGGCATGGTGGATGAGCATGCTGGTGGTGGTAACTGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGCGACACCTCGCGCCGGGTACGGGAAATGATCTGGCAACAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAATCCGGTTTTGAGTTCCAAACCTACGGTGAAAACCGCCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGGAAAATCGGTGGAATTTTACGGCCTTCAAAATACCTTATAAAACAGGTATATACTTTTAGA # Right flank : AAAATAAATCGGGCACGTGGTGTGATTACGCGTGCCCGATGTGGGTGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGCAGGTTTTTTGAGCGCCAGTGTTTTCGCTGCCGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAATTGCTCAGCCTGTTGTTGCAGAGATTGCGTGGCATTGTAGCCCTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 312345-311776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGD010000007.1 Dickeya zeae strain A661-S21-A17 A661_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 312344 28 100.0 32 ............................ ATGCGTTGGCGCTACAGCCGGAAAACCTCGAT 312284 28 100.0 32 ............................ TGCAACAGCGCAATGCCCTTCGGCGGGTTGAG 312224 28 100.0 32 ............................ AGCATGAGGCCACGGCCATAAACGTTGTGCTC 312164 28 100.0 32 ............................ ATGTAATAAGTGTATGCAGTCCGAACATATGC 312104 28 100.0 32 ............................ TTCCTGGGCAATGGCGTAGAGTTTACCGTCAA 312044 28 100.0 32 ............................ CGGCTGGCGGAACGTTGAACCTGCTGCGCGGT 311984 28 96.4 32 ..........A................. TAAGTTGGAAGATCGGTTCTCTCTTATCGAGA 311924 28 92.9 32 ...........AG............... AGCGTGTTTTTTTCTGAAATAGGCATCGCGGT 311864 28 92.9 32 ...........AG............... ATCATAAGTTTGTAAAACGAGTATGGTGGAAA 311804 27 82.1 0 ...........C.C.........-..CG | CG [311781] ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCACCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTCAGACGTCCTTTTCGATATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGTACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCCACCACACCACCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCAGGGATATTCTGTCAGAACGACGTCCAATCACTATTGCTACCCGCCGCTGCCGTGGCCCGCTTTTCCGGCAGCGCCGGAGATAGCACCGCTGACGGACGGGCTGGTGGCGTTGTGCCGCTGTTGCCCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 321295-321563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGD010000007.1 Dickeya zeae strain A661-S21-A17 A661_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 321295 28 96.4 32 .............T.............. AGGTGATTTGCATTCAACAAAAACGAGACGAC 321355 28 100.0 32 ............................ CACTGACTTATTTCTTTCTTCGATATCAACAT 321415 28 100.0 32 ............................ ACATGGAGTCATACGCTATGGCTATAGAAAAG 321475 28 100.0 32 ............................ CACGCGGCGCGGGTCAAAACAAGCTCGTGCGC 321535 27 89.3 0 .......................-..CG | GG [321556] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTGCCGGTACCAACGGGTGCGCAGTACCGCACCGTACGCCGGGTGCAGGTGAAAAGCAGCGCCGAGCGCCTGCGCCGCCGTGCGGTGAACAAGGGCTGGCTGACCGCGGATGAAGCTGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACTTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCAGCAGGACAAACCGGTCACCGGGGTGTTCTCCAGCTACGGCTTAAGCGCGATCGCCACCATCCCGTGGTTTTGACCCTTTTTGGGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGAAAAACGGCAGTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACC # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGGCGCGATTGTCTATCCCGCACGAAACCACCCTCCGCCCCCACATACATTCGACAAACACATTCGCCAGTAGCACCCCGGCTGTGTGCCAACAGCCCCATTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAACAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAGACACGGCCGCTGGCGATGAGATACACACCGAACT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 327660-326610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGD010000007.1 Dickeya zeae strain A661-S21-A17 A661_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 327659 28 100.0 32 ............................ ATGACTCAAATAGCGATGCATTAACGGTGGAG 327599 28 100.0 32 ............................ GGTTGCCATTTCTTATACATAGTGACCTCCAT 327539 28 100.0 32 ............................ AGCATTAACCGGCATACCAACCGCACCAACCG 327479 28 100.0 32 ............................ CAATCGGTTCCATCACACCGCAGGATTCGCTT 327419 28 100.0 32 ............................ GATATGGGGCATCCCATACCGGAGTGGTGCCG 327359 28 100.0 32 ............................ AGGCAGCTGGCGGCGCTCGGATATGACATCAG 327299 28 100.0 32 ............................ TGACAAGCCAGAGATTTACCAGCTTGCCGAAA 327239 28 100.0 32 ............................ TGGGAAGGTCAATTGCACGCTGTCCGGTGTGG 327179 28 100.0 32 ............................ ACAGTGTCTGGATAAGGGCCGCATGGCTGGAT 327119 28 100.0 32 ............................ ATCGGCGGCGCAGACTGTCAGGTGAGTAATGA 327059 28 100.0 32 ............................ GGTGTGTACCGGCAACCGCTCAGCAGTAGCGC 326999 28 96.4 33 ...........C................ CGCTGACGGTACGCATCAGGACGATGTGCTGAT 326938 28 96.4 32 ...........C................ AGAAGGGGAGCGGGTGCTTCTTCTTACCCCAT 326878 28 96.4 33 ...........C................ GTACAGCTCGCTGTCGTTACAGTGCCGCTCTAA 326817 28 96.4 32 ...........C................ GACAACATCATCAACTGACGGTGAACCCATAC 326757 28 96.4 32 ...........C................ TAGTAGGTTCTGCAACTACGATTTATGTTCTT 326697 28 100.0 32 ............................ ATTAGGAAGGTCACTATTTTATTTGTGATGTC 326637 27 82.1 0 ...........C.........G.-..CG | G [326614] ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.0 32 GTGAACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTGTACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCAGCCAGCCCCAATAACAACATCAATGAAAACCGCTTTTTCATAAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCTCTCACCAGCCTGACATACATTCGCCAGTCAATAACAAAGCACCCCGGCTGTTTACCAACAGCCCAAAAACGCTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGTAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //