Array 1 1922-2075 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUMD01000021.1 Clostridium sp. OF09-36 OF09-36.Scaf21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================= ================== 1922 22 100.0 43 ...................... GGAAGCGGCGGTTGATAATTGCAAGGATGATGCGCTGCGTCTG 1987 22 95.5 45 ...T.................. AGGAAGCGACTGGCGCAGCAGTTTCAGAGTATGCTGCGCGGAATA 2054 22 100.0 0 ...................... | ========== ====== ====== ====== ====================== ============================================= ================== 3 22 98.5 44 ATTCCAATCCACGCTTCCGCGA # Left flank : CTAAAAGATCAATTGTGTAAATGGTGTATTCATCACGCAACAATGGAATCAGTTGTTTCCACTCGTGACCGGAAGCCATTGGATTCAAATCATGGATGAGCAGAAGTGGTTTGCCGCTTCCTTCTTTGGTGTAGTGAATATTGCCAAGGCGCCATTTAAAACAGAGAGATTCTGGCTCAGCAAGCAGATTTTTAGAAACAGCTGAAACCTGAATGGCTTTGTTGATTGCTGCAGTAGTGGCAGCGGCACTGGCAGAAAGTATAAGGAGTGTGAGTAATTTATTTTTTGCTTTCATAAAATCTCCTTTTAATTATGAAAAGATGGGTTGCTATTTGCGCAATGCGTAAACAGTAACAAAGTGCTGAAACAATTAGGAATTCATGTTATAAGTATAGTATTTTTTTATGAAAGATGCAACCGCTTCCAGTAGAATGATTTCATCCTGTGATTCTGCGAGAAAAGTGACGGTAGCAACACTAAATTCAACAGATGCAACAGTA # Right flank : AGGAAAAACGACGCAGACGGAGAATGGCAGAACGAACAGAATGTATATTTCAATCCACGCCCGCCTAAATTGAAATATATTTGTATCGTTCTCATTTCCATTCACAGATGAAGAAGAAATGTTTCACGTGAAACATTTGTATATGTTAATATGCGTCTGTAAATAGGAATATTTTGTATTTTCAAGCTGATTTTATTACAAAGAATAGGAAAAGTGAAAAAAGTGTGCTATACTAACGTTATTGTTTTAAATAAGCCGGATATGCTTACGTGAACGGCAACAAGAAATCTGCTTTTTGGCGAGAAATATAAGGATGGTTATATGGGAAGAATAATAGCAATTGCAAATCAGAAGGGCGGCGTAGGAAAAACTACGACTGCTATTAATTTATCTGCATGTCTGGCAGAAGCAGGTCAGAAGGTTCTTGCGGTGGATTTTGATCCGCAGGGAAACGCGACCAGTGGACTTGGATTTGAAAAGGGGTACATGGACAAGACCGT # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCAATCCACGCTTCCGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1780-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUMD01000038.1 Clostridium sp. OF09-36 OF09-36.Scaf38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1779 32 100.0 35 ................................ AACGGTCAATAGTTGGAGGATCAATGAAAACCGAA 1712 32 100.0 34 ................................ TTGGCTTATCGTGTTGCATTTTGTGTTGCACTAT 1646 32 100.0 34 ................................ CTTTGGGGTAACATCGAAAATTCGATTGCATACG 1580 32 100.0 36 ................................ TGCATCGTTAAGGAACTCCTCACCCAGCCAGTCATC 1512 32 100.0 33 ................................ CCGTCTATGCAGTCAGATTCCAGCGCACATATT 1447 32 100.0 35 ................................ TTTAACTGTCTATAGTATAACATACTGGCGCCAGT 1380 32 100.0 33 ................................ ATGTGGTATTCCTCCTTGTATCTGGTATGAATT 1315 32 100.0 33 ................................ GTCTGGGTATAGGTCGTTGCCGCACCTAAACGC 1250 32 100.0 33 ................................ GGCTATGTAACGATCGAGAAACAGAAGATCACC 1185 32 100.0 33 ................................ TTTGCATCAATCGTTAAATATCCGGTCTTAAAT 1120 32 100.0 35 ................................ GCCCAAGTAGTGGGCGTACCCTCAAAACCGATATT 1053 32 100.0 34 ................................ TCTTGGACGATGCTGGTGATCCGATGGCGTCCCG 987 32 100.0 35 ................................ CGTCTGTTAGACCGCACGCTCAACAACGTGCTGCG 920 32 100.0 36 ................................ GAGTCCTATTGTTGTCATAACCTTGTGAGGACCATT 852 32 100.0 33 ................................ ATCTTCGTCCTCCGACTCTTAATCTTAATTTTC 787 32 100.0 34 ................................ TGAAAGAAGCGGAGGAATATTTTAGAAAATCTCT 721 32 100.0 34 ................................ ATAATTGACTGACACCATTTTGCTTATAAACACC 655 32 100.0 38 ................................ CTGTTCGCCCACTCCTTCTGTGCGGCGCTGATCTTGCC 585 32 100.0 35 ................................ TTTAAAACCTCCGGGAATCCGACCAGGTCCGGGGT 518 32 100.0 33 ................................ TTCGAAAATCAATATCACTCCACAGGAGCGAAA 453 32 100.0 33 ................................ TTCCGGGATCTTGAAGATATTTCCGTATCTATG 388 32 100.0 33 ................................ ATTTGGAAGATTTATAAATCGAACTCCATCATA 323 32 100.0 36 ................................ TATGCCATGAATAACGGTATGCTTACCGGATTCAAC 255 32 100.0 35 ................................ TCTGCCTTAAACTGAGCGGCTGCCAATTCGACCCG 188 32 100.0 33 ................................ ATAATCCCAACAGCAATATCAGTCGTTGCACTA 123 32 100.0 37 ................................ CTGCAGGAAAATGAGGACCCGGTAGCAGTAAGCTCTG 54 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 27 32 100.0 34 GTCGCTTCCTTCGCGGAAGCGTGGATTGAAAT # Left flank : ATTAAAAATGTTTTCCATAGAACGTGTCATGAAATCGTTGGTAGGTGAGTTGACTGAAAATGAAAAGTGGTCTATAAAAGGAACTCTGATGGGAGAGTGTTGGCATAGGGACTGTTGCCTATCAGATTATAAAGGCCACAAGAGATGCGGAAAATCGGAATTTGGAAACCAGAAAGTGACAGCATTAATTCTGCCAGAAGTTGTACAGCAGATCCTAAAAACGCTATGATTTCGGAGTAGAGTATTGATTAATGATTGCTTCATAATAAACTAAGTTTTCACCATCAAACCTTAGCCAATGGTGGAAAGGGTGGATGCATATTAGGCCACTAAGTGTGAGGTGCGAGTCGCAAGTATACATAAAAATGCATATGGATTCGCACTTTTTCCAATAAGAATATTTTATTTGCTTGACGGTATGAAAAAGAAGTACTATTATTAATTTGTAAGTTGTGCTATGATTTTTGCAGATATACACAAGAAAATTGTACATATCTGCT # Right flank : TCCGGGTCTCACAGAAACACTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCTTCGCGGAAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3820-3243 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUMD01000038.1 Clostridium sp. OF09-36 OF09-36.Scaf38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================================================================================================================== ================== 3819 33 100.0 34 ................................. TTGTATGAACTGGACGGCTGCGGAAAATATGAAC 3752 33 100.0 33 ................................. TTCTGTGCCCCGCAATGATACGGCGCTTGCCGT 3686 33 100.0 34 ................................. CAATCGTTACCGGTTCACTCATGCGCCATCACCT 3619 33 100.0 33 ................................. CTGTCCAATCCTCCACAGATATTTTTTCTTACC 3553 33 100.0 34 ................................. CAATCCATGCCAGGATACGCAAAAATATCCCCAG 3486 33 100.0 179 ................................. TCGGTCGTAGAGGATATCTGATCTATATTATACGTGTATTTTACCAAACGAGAGGATTCGCACGTCTTCCAATAAGAATAGTTTATTTGCTTGACGCTATGAAAAAGAAATATTATTATTAATTTGTAAGTTGTGCTATGATTTTTGCAGATATACACAAGAAAATTATACATATTTGC 3274 32 84.8 0 .......C..T.AC......-............ | ========== ====== ====== ====== ================================= =================================================================================================================================================================================== ================== 7 33 97.8 58 GTCGCTTTCTGCGAGGAAGCTGTGGATTGAAAT # Left flank : TAGTTGCCTGCGAACGATACAATCGCTCATGACGCAGGAAGCAGCCATGCAGTTTCAAAATGTCGCAAAGGAGTTTAAAGTGATTGATTCTGATACGGTTACAGCAGTTGTTGATGAATCCTTTGCAAAAGAAATTGCACACGGCAAAGGCGATTGGAAGGTATTGCAGAAAAAGTCCATTTCAATTCCCCGGAATAAAATTAAGCAATGGAATGTAAAAGAAATTGTAGAAGATATTTTTCAATGGACTTTGGCGTATGATGAATTCCTGGGATATATGCGTGGTGTTTTGGAACAGTACAAGTAGAAGTTTCTGAAATATTTGACACGAATAGGTATTTGGTGCGAGTCAGAAGTGTACATAAAATGTTGGCAGATTCGCACTAGTAAAATTGGATATTTTTATAGGGTTGACAGCAATGGAAGCGGATAATATTATTATTTTGTGAGTATTGCTGTGATTTATGCAGGTGTGCAAGGAATGATTGTGCATGTTTGCT # Right flank : GAATGAGAAATAATGAACCCGTACCGCCGGAAGCAGAGGCTCTTGTCAGAAAACACATCGAAAGGTGGAGAAAGCAATGATTGCAATACCCGTGTGTTTCAAATGTAAATACTTGGAAAAAGGGATGAAGTGTAAATTTTATTCGAGCTGGATTCCAGTAGAAATAACGTTGGAAAATAAAGAGCCCAAAACAGTGTGCAAAGATTTTTGCATGAAGGAACGAAAGACAACCACCAGTCAGTAGGCCGGTGGCATTTTGTGGAGAAAATTATGTTAAAAGTGGTTTTAGCAATCAAAGTAATCTGCTTTGTTATCTGGTTTGTTACGGATAGTGGCTTACGTGATTTATATCGTATGCCAATGAATCTGTTATGCATTGCGATGTCGCAACAGAAATTATGTAGAATACTGGCATAAAATATGATATGATGTAGGAGCTGCCAAACCTCCAGCAGAAAGGAGGTGAATGCCTTATGGCAGAAATACTCATCACGTTTCTT # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:-2.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTTCTGCGAGGAAGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 50-675 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUMD01000043.1 Clostridium sp. OF09-36 OF09-36.Scaf43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50 32 100.0 35 ................................ GGGAGATCGACAAGGCGGCAAATATTGAGCTAAAA 117 32 100.0 34 ................................ CTGCGTGTAACATGGATACGTCAGGTCTTTACCC 183 32 93.8 33 ..............................TC AATGATCTGGCAGCGGGCTTTTGGAGTATGGCC 248 32 100.0 33 ................................ GAAGTCAATGTCACTCCAGCACAGTGCAAAGGT G [273] 314 32 100.0 34 ................................ CTTAACATAATGGATAGACTCAACCTCTTGCCCC 380 32 100.0 35 ................................ TCATGCAGGGGACTTTAACTTCCCCGTTTGTAACC 447 32 100.0 33 ................................ CTTGTCCAGCATGATCGCACGGTCCACCAGTTT 512 32 100.0 33 ................................ AGGTAGAGTTATGGAAGCCGTGCTGCCATGCAA 577 32 100.0 35 ................................ CGCTGTTAAAATGTTGTACAGCCCCATTACGAATC 644 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.4 34 GTCGCTTCCTTCGCGGAAGCGTGGATTGAAAT # Left flank : AGCGTGGATTGAAATCCGGGTCTCACAGAAACACTGAGCAAGCTGCGCCG # Right flank : TAAGCTAGAATACCGGAGCTGTCATAAGTATGAGGCTCGCTTTCCTCGCGTAAGCACAAATTCCAGAAATATCCAGTATCTTAAATACCTGGCATTTTTATAGTACACCTATACAATTATAATGTAACACAACAAGAACATTATATGAGGAGGGTGTATATGGCAGAATTATATTTTACAATTTCTGGCTGTAAACATTATTACGGCACGGATTTTATGGAGAAGGGCATGAAAGTCCAACTCGTAAAAGAACCGGACAATGAATTTGACAAAGAAGCCATTCAGGTAATGGTAAAAGGCCTCGGAAAATGTGGTTATGTGGCGAATAGTCCTTATACTGTAAAGGGAGAATCCATGAGTGCCGGAAGATTGTATGATAAGATCGGAGATACGGCAAAGGGAAAGATTTTGTTTGTTTTGGATCAGGGTGTGTTATGTAAGATCACAGATACAGGAATAAAAAGTGAAGAATAGAGAAGGTGTTTGTTTCGTTGCGCATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCTTCGCGGAAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8946-9234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUMD01000043.1 Clostridium sp. OF09-36 OF09-36.Scaf43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8946 30 100.0 36 .............................. CAAACAATCTCCTTTTGAGATCACGTACAAGCCAAC 9012 30 100.0 34 .............................. CCGCAGAGCACGCATCGGTCAACATAGCCACCAT 9076 30 100.0 34 .............................. TAAAACAAGAATGATGAACATTCCAGCCAAAGTC 9140 30 100.0 35 .............................. TTCTATCCCGGCCCATACGCGCATACGGATGAGTC 9205 30 86.7 0 ......................A.A...GC | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 35 GTCGCTCCTTCGCGGGAGCGTGGATTGAAA # Left flank : TTTTCCTTTGGAAGTGAGGTGGCAGAAGATGCTGGTATTGATTACTTATGATGTAAATACAGAAACTGCAGCAGGAAGAGCCCGCTTGCGAAAAGTTGCCAAGCAATGTGTGAATTACGGACGAAGAGTGCAAAATTCTGTATTTGAATGCATTCTCGATAACGCCCAATGCATTATGCTAAAATCCATTCTGACGGATATTATAGATGCTGAGGTGGACAGCCTGAGATTTTATTATTTGGGAAATAAATACCAGACGAAAATCGAGCATGTAGGCGTAGACCGCGGCACAGCTGCTGATCAGGTGTTGATTATGTAGTACGTGTTCGGTGCGAGTCGACAGTGTACATAAAAATGTCTGGAGACTCGCATCGAAAAAAGTAACAAAATGTGTTAAAGGGGCATTTATCGAAGCTGATTTGAAGATTTTGAAAAGTACGATTTGTGCAAAATGTGAGAGAATATTGTATGTTGGAGAAAGAAAATTGGTGGTAAATGGC # Right flank : CAGTTGATAACAAAGACCGGAAAGTCGGAATCGATGAGAAAGAAGGCGTAATAATCATGAAAAAGAAAATAGAAACTTTACAGGCTAATAAGGAGTTTGTGAGAACATATGATGATTCAAAGTATGAAAAACCATCTGTTACTGCAGACATTGTGATTTTTGGAATCTTTACCAGTGTTGGAAATTATGAGCGTGAGACATCAGAAAAGAAACTGAAAGTTCTGTTGATTCAAAGAGGCGCAGCACCTTTTGAAGGTTGTTATGCACTTCCGGGAGGTTTTGTGCATCGGGGAGAACGGATTGAGGAAGCTGCAGAACGAGAACTGTGGGAAGAAACAAATTTAAATTGCAGTTTTTTGGAACAGTTTGGTACATACAGCAATCCGGATCGTGATCCGAGAAGGTGGGTGATCAGCAATGGCTTTTTGGCGTTGATCTGTGCGGATTATGAGAAAATTAAGGCAGGAGATGATGCATCAGATGCAAAATGGTTTGATATT # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCGCGGGAGCGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //