Array 1 166348-165054 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM3747 BCW_8433_1__paired__contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166347 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166285 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166224 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166163 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166102 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166041 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165980 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165919 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165858 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165797 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165736 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165675 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165614 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165552 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165449 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165388 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165327 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165266 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165205 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165144 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165083 29 96.6 0 A............................ | A [165056] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184647-182666 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM3747 BCW_8433_1__paired__contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184646 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184585 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184524 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184463 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184402 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 184341 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 184280 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184219 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184158 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184097 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184036 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183975 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183914 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183853 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183792 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183731 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183670 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183609 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183548 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183487 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183426 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183365 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183304 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183243 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183181 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183120 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183059 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182998 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182937 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182876 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182815 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182754 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182693 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //