Array 1 16325-11229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTK01000010.1 Bifidobacterium ruminantium DSM 6489 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 16324 29 96.6 32 ............................T TGTCAAGTCCCACGGTCATGTCCAGGACTTTG 16263 29 100.0 32 ............................. ACTTTGATTTCTCCTAATAGTTGCTGCCGGAC 16202 29 100.0 32 ............................. AGATGGCGAAACTACTATTAAACTCATTGGTG 16141 29 100.0 32 ............................. CAGTTTGTGCGTTTTTCGCTTTTATCAAAATT 16080 29 100.0 32 ............................. GTTCTGTGTTCGCGCCAACGCGCCAATACGAG 16019 29 100.0 32 ............................. AGTGTTGCGCCGTCTGTTGCCGCCGTCCAACG 15958 29 100.0 32 ............................. CACGTGGAACATCGCGCAGGAATGTGCCGCCC 15897 29 100.0 32 ............................. TCATTGGTGGGGAAGTTCGGTGCATCGCTCTA 15836 29 100.0 32 ............................. GGAAACGTGGTCGAAGATGATATTATCACCGA 15775 29 100.0 32 ............................. GCATCGCGTGGAGTTAACGCTGCAGCCTACGG 15714 29 100.0 32 ............................. GCGCGTCCAAACAGTCCACCGCTTTTGCCGCC 15653 29 100.0 32 ............................. AGGGAGCCGTACACGCCGGACGGTCCGCCGGT 15592 29 100.0 32 ............................. CGGATTGACGATGGTCACGAACCTCTTGCAGG 15531 29 100.0 32 ............................. GATGCTGCATCTCATGGACAAGAACCCCGCAT 15470 29 100.0 32 ............................. CAGGTGCGGCGGGTGATTCCCGACCTTTTGAT 15409 29 100.0 32 ............................. TCGTAGACGGTCATCTGAAGCACATCCTCCAA 15348 29 100.0 32 ............................. ATTCTTTTTACAAGGCGCAATGCGCCGGAACG 15287 29 100.0 32 ............................. GATGTTGAACTAAGTAAATTCGATATAACCTA 15226 29 100.0 32 ............................. TCGCCGCCGTTCTGAATCATCGCAGCGGGAAT 15165 29 100.0 32 ............................. CAGCCGCCCGAGAAGCTGCGCAAGGTCAACGC 15104 29 100.0 32 ............................. TCATGCGTATCGGCGTAAAGCAGATCATTGGA 15043 29 100.0 32 ............................. CCGACGATGAAACGTTCGATAACAGCACGCTA 14982 29 100.0 32 ............................. GGTACGCAACGCGTCTCTACCCTGGAACATCA 14921 29 96.6 32 ............................G TATCAGCCGCGAGGTGTTGAAACGGTTGCTGA 14860 29 100.0 32 ............................. GGTCACGACGCGCGCCGCGTAGAGGATGTCGG 14799 29 100.0 32 ............................. AGTCCATAACGGGCTGAAACATTGTTCCAAGT 14738 29 96.6 32 ............................T CGCATCATGGTCGCGGTGGCGACGAAAACCGC 14677 29 100.0 32 ............................. GATTACACATACGACAACAATTACATGGTTAG 14616 29 100.0 32 ............................. TCGGTTGCAAACCCGACGATGAAACGTTCGAT 14555 29 100.0 32 ............................. AGATATATGACTGGGTACAAGCAAACATGTGC 14494 29 100.0 32 ............................. GATTACACATACGACAACAATTACATGGTTAT 14433 29 100.0 32 ............................. ACGCCTATTTCGCGGTCATAGTATCGGTTTTC 14372 29 100.0 32 ............................. AAGCTCTACAATAGACCGTCGCTGACGCCTTG 14311 29 100.0 32 ............................. TCGGTTGCAAACCCGACGATGAAACGTTCGAT 14250 29 100.0 32 ............................. AGATATATGACTGGGTACAAGCAAACATGCCC 14189 29 96.6 32 ............................A TCTTGGATGATTCGAGCGCGTACACGGTCACG 14128 29 100.0 32 ............................. AGCAACCCGTTGATTGTGGTGCTGTTAATATA 14067 29 100.0 32 ............................. ATGGTGTTGAGTCCGGCGGCGAGAGTGGGGGA 14006 29 100.0 32 ............................. GCCTACGCGCGTCGCAAGCTTATGACCGTCTG 13945 29 96.6 32 ............................T GAGTCGGTGACCCTGCCGGATACGCTCACCAC 13884 29 100.0 32 ............................. CGGACGTGGACAATCCCACCGGCAACAACAAT 13823 29 100.0 32 ............................. GTGTGGCCGAAATCACCGGCACCACCGGTGAA 13762 29 96.6 32 ............................T TAGCCGTGTATTTCCGTGGTTGGATCCATTCG 13701 29 96.6 32 ............................T CGAAACAGTCGATTCTGGCGCCATTGGCTGTC 13640 29 100.0 32 ............................. GGTGGGCGGCTATCCGGTCTCATACGGAGAAT 13579 29 100.0 32 ............................. ACCTGAAAACCCTCAGCAGTAATAATAAAATA 13518 29 100.0 32 ............................. CGTAGATGATGAGGTCAAGCCGAAGGAGTCAT 13457 29 100.0 32 ............................. AATCAGATGGCGCAATTGAACACGATCGGCAG 13396 29 100.0 32 ............................. ACCTGAAAACCCTCAGCAGTAATAATAAAATA 13335 29 100.0 32 ............................. CGTAGATGATGAGGTCAAGCCGAAGGAGTCGG 13274 29 100.0 32 ............................. GTAGGTTATGATTGCGACGAAGATGCTTGATA 13213 29 100.0 32 ............................. TCCCTAGCAATTCCCCAAGCTTGGATAACGGG 13152 29 100.0 32 ............................. GAATTTGGAGCCAGATTTGATTGTGAGGACGG 13091 29 100.0 32 ............................. CGTAACCTAGAGATAGTTGCATATACAACCAT 13030 29 100.0 32 ............................. CGCCTTTTGGCGTCCATCATGTCAGGAGGCAA 12969 29 96.6 33 ............................A CGCGCGGGGATCACCACAAGCTGCGTCACCTTG 12907 29 100.0 32 ............................. GGCAAGCCACTACGATAGCGGGAATCCACAAT 12846 29 100.0 32 ............................. GTAGGTTATGATTGCGACGAAGATGCTTGATA 12785 29 100.0 34 ............................. GGTATCTCCTCCTGACCGTCGGCGGTCTCTCGGA 12722 29 100.0 32 ............................. AGCAAAAACAGACGAAACCAAGTAGACGTTCT 12661 29 100.0 32 ............................. CGACCCAACAGGCGGCGGTGGGATAACCGGGG 12600 29 100.0 32 ............................. TCGACTTGAGCCAAGTAGTATGGCGGAATTCG 12539 29 100.0 32 ............................. GTCTTGCATATGAGGTATTCGGCTTGCGCGCC 12478 29 100.0 32 ............................. CGGCAGTAATCCTTGGCAATGCCGTGGAGCCT 12417 29 100.0 32 ............................. GATCTGAAGAATCCTTTGGAGCGGCGGAATTT 12356 29 100.0 32 ............................. CGGCAAAACTAAGCCCGAAGACATCAGCCATA 12295 29 100.0 32 ............................. GACCTCGCACGCTCTAAACAAGTACTACGAGG 12234 29 100.0 32 ............................. TATGAAGACTGGGACGACAGCAGTGAGGATAA 12173 29 100.0 32 ............................. CTTCGCGCTTACCGCCTTGCCGAAGCTCTTAG 12112 29 100.0 32 ............................. GTCCGGCTCATGTTTCGGTTCCGGTTCCGGCT 12051 29 100.0 32 ............................. CATGAGATTGACAATCTCAATGCGTCTGGCAA 11990 29 100.0 32 ............................. TCGTTGCCCGCAGCGTACAGGCTCACTATTGC 11929 29 100.0 32 ............................. ACCGGATTGACCGTGACCGCGAAGGTCACCAA 11868 29 100.0 32 ............................. GGATACAGAAAAGGAGTTGACATGCTGACCAG 11807 29 96.6 32 ............................T TGCTTACTGCTCATGTCCTGCGCATTCAATGC 11746 29 100.0 32 ............................. TGCTCCGGCGTGAAATCGTCAATGACCTTATG 11685 29 100.0 32 ............................. GGTGCGGTGAACTGGCTGAAGGATGCGGGCGG 11624 29 100.0 32 ............................. GGCACGCTTTACTATGACCAGGTGTTGAACGA 11563 29 96.6 32 ............................T GTGAGGTATTCCGTATTACGTAGAGCTCACAA 11502 29 100.0 32 ............................. TGATAATCCAACATCAGAATTCCACCTCACTG 11441 29 100.0 32 ............................. TTCGTGGACATCGAATTTTGGGATGATTGGCG C [11436] 11379 29 100.0 32 ............................. GAAAGTCCGATGCGGGAAGAATCAATCAGGCG 11318 29 100.0 32 ............................. GATCGCACGTATTGGGTTTCGCGGCTGCTGTA 11257 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================== ================== 84 29 99.6 32 GTGTTCCCCGCATGCGCGGGGATGATCCC # Left flank : ATGTGGGCTTGTGGGATGAACGGATCGGAGAGGTTGCCGCTGGAAAATCCTATGCTGATGACGAATGGGATGAAGGAAAATGGTAGTGGTTGTGTTGACCGCATGCCCGGCCGGTTTGCGAGGCGATCTTACCCGATGGCTGTTGGAGATATCTCCAGGGGTGTTCGTTGGTCATATCGATGCGCGAATTCGTGAAAAGCTTTGGAAGCGCATCGTCGAGCTGTCGAAGGTGGGACGTGCCATTATGGTTTATTCTGCGCGCAATGAACAGCATCTGGCGTTTAAAGTGCATCGGGCGGATTGGACGCCGATGGATTATGAAGGTTTGGAACTCGTCAAACGTCCTAAAGAAATGAAGGAAGCATCATTCTCTGGTACTCCTCGGCGTGGTTGGAGTAATGCCAGCAAATATCGAAAGGCGAAGAAGTACTCAAAGTAAAACTAAATGAAAAAACACTGATACGAAGGCGGATGCCTTGGTATCGTGCTAATTTCTTAGT # Right flank : GGGTGGCATGTGCACTACCACGCTTATAAAACGTTCTGTCCGCTCGCATAGTCTGTGCAGCCGATTCATGAATTCGAATCCGACGGCATGCTCTTGCGTTCGTGTGATTCGGACTGTGGTTTAGGCCGATTGCTTTCTTCTTCTGCCTTTCAGTTTTCTTTGATGATAACGACAGTTTCGAAACGAGTCTTTTCGGTTGACGATTTACCGCTGTGTCGTTCAGCAGGGGGTAGCATGGTTCGTATTGGTGGGAAAGCTAGGAGGATGGAACAATGAAGTTCAGTGAAAAGGGGACTGATACTGGGAGCTTTACAAAAGCCTGACTTGCATGGAGATGTTCTAATGGATGACGTTTTATCGGACCTGGTCGATTTCGGAAATGCGATTACGGAATGCGGCGTAGCGGATTCGTCTGCCGGTCTGCATGCTTTTCTGATGGCTTCCATCCCGAGAAACCGTCTTCCGCTGGTTTTCTGGCCCATTGTTGTTGGCGCCCTGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //