Array 1 134069-138981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYK01000002.1 Bifidobacterium actinocoloniiforme DSM 22766 Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134069 29 100.0 32 ............................. AGAACATGCGCGTGATGCGCTGGGGCGACAAC 134130 29 100.0 32 ............................. CCGGCGACACGCTCAGCGGAATCGCCGCAAAA 134191 29 100.0 32 ............................. CGACACACGTAACGCCAATTTGTCAAACACAT 134252 29 100.0 32 ............................. GTGAGATTGCTAGCATCTCGATAAGTCGCTGA 134313 29 100.0 32 ............................. GGCTCCTTCGCGTACTCAATCTTGACGGCCGG 134374 29 100.0 32 ............................. GCTTTGGCCGTCCTCTTCAACGAAGAGTACGC 134435 29 100.0 32 ............................. GCTTTGGCTGTCCTTTTTAATGAAGAATACGC 134496 29 96.6 32 ............................T TGAGCCACTGGGATTGGGATTGGCGAATGCTG 134557 29 100.0 32 ............................. TACAAGGACCCCATCACACTTGGCATGATGCA 134618 29 100.0 32 ............................. GAAGAATATGCAAAGGCTGACCAGCGAATTAT 134679 29 100.0 32 ............................. TGTCTAAGATTGTAGTCAGTCACTTGCTGCTG 134740 29 100.0 32 ............................. GCCATCCGCAATCAAGCGTCGACTGACTTCCA 134801 29 100.0 32 ............................. ATTACCACCCGCCAGGGCGCCCCCGGCGGAAG 134862 29 100.0 32 ............................. CCAGACCTTGCGCCACAGTGCGCAACTGCTTA 134923 29 96.6 32 ............................T CAGTCATTATCATCCTCCTTGCCAGGGTCGGG 134984 29 100.0 32 ............................. TGATACTTTTGGGCACATCCATACACCCATAA 135045 29 100.0 32 ............................. GTCACTTTCGACGTGATGGCTGATCCGTATCA 135106 29 100.0 32 ............................. CCCAATCTTATACGCGTGGGCGAGGTACTCAC 135167 29 100.0 32 ............................. TGATTATGCTGATAATATCCCGCTAGCAAACA 135228 29 100.0 32 ............................. GAACTCCTTCTTGCACCACAAGGAGGCGATTT 135289 29 100.0 32 ............................. TACGGCGTCGGCGGTTCCGGGTTCAGCGTGGG 135350 29 100.0 32 ............................. CAGCCCTTGATGGTGGTGAGGCTGGAACTGAG 135411 29 100.0 33 ............................. TGACCCGGATGCCGCTGTGGTCCGACCTCAATG 135473 29 100.0 32 ............................. TTGGCAACATTTGGCAGACATGAACAACATCA 135534 29 100.0 32 ............................. CTCACGCCGGCCGAAGCGGACCGGATCATTGA 135595 29 100.0 32 ............................. CAACCCCAGTCCATGTCCGTGCCCTTGGTCGC 135656 29 100.0 32 ............................. TCCGACGGTGTGCAGGCGGTGGGCGGGTTCGC 135717 29 100.0 32 ............................. GGCCCCGGCATATACGCGCTCTTCTACCACGG 135778 29 100.0 32 ............................. AGAAAACATCCCCTTCCCCCTAACAGCTCAAT 135839 29 100.0 32 ............................. CCCTCAAGACCGTCGCCCCTCCTCAGACAGAG 135900 29 100.0 32 ............................. CAGGGTCGCCATCCACCGTAACTACAGATTCG 135961 29 96.6 32 ............................T AGACAAAGACCCGCAGACAAAAGAAAACCCCA 136022 29 100.0 32 ............................. ATGATTCGGCAAAGGGGGGAGGGCCTGCCTGT 136083 29 100.0 32 ............................. AAGCGAATTGGGCACCCATTTAGCTAGTGTCC 136144 29 100.0 32 ............................. TTGTGTCTCAGATTATGGAGACCCCCCGTACA 136205 29 100.0 32 ............................. GTTGGTACTTTGCGTAAGTATGGTCTTACGAT 136266 29 100.0 32 ............................. ACCAACGACTTAACCGGGTAGGCCAAGGAATC 136327 29 100.0 32 ............................. CTGACCGCCACATGGTCATACGAAGGAGGCCA 136388 29 100.0 32 ............................. GCCGGTGGATACGGGTCATCAAACGGGAAGTG 136449 29 100.0 32 ............................. GTCGACACATACAATAATCTACACAAAGATTA 136510 29 100.0 32 ............................. ACCGGCATAGGTGATGGTACCATACAGCAGAG 136571 29 100.0 32 ............................. GGTAAGATTAATAATTATCTTAATCCAACAAA 136632 29 100.0 32 ............................. CTTAAAAAATTATCCCCTGAACTGAACGACAG 136693 29 100.0 32 ............................. CGTCAAGCTGACGGGTGGGCACTCCACGACAG 136754 29 100.0 32 ............................. TAGCGCCGGAGGCTTTGGCTGTCTGAGCATCG 136815 29 100.0 32 ............................. CCTGACCCGTCGGTCTGCGAGTCGTCAAGGCC 136876 29 100.0 32 ............................. CGGCGAGGTGGATAGTTTCGACGCCAAGCGAT 136937 29 100.0 32 ............................. TTCAGCGAATCGCGCAATTCGACTAGCTTATT 136998 29 96.6 33 ............................A CGCCGTGTTCCCATTCCTCAAACTGGAGGCATT 137060 29 100.0 32 ............................. TTACGTTCACTGTCCCGGACCCGCTTGAGCCA 137121 29 100.0 32 ............................. GAGTTGCGACTCAACGAGGGGTTTGAACAGAC 137182 29 100.0 32 ............................. ATCACTTTCACATTGAAGGAAATGATTGACTC 137243 29 100.0 32 ............................. GTGAACCTGACCGTGACCAGCCGGTCCGTGGC 137304 29 100.0 32 ............................. CGAAAAGCCCCTTTTGAAGCTCCGCTTGTTTG 137365 29 96.6 32 ................T............ GGCGTGACATCGGGCATGGTGTCGGGCATGAT 137426 29 100.0 32 ............................. GCAATCAAGGATTCGGCTGGCCCGGTGCTGGA 137487 29 100.0 32 ............................. GCAGACAGCCAGTCACCGGCCTGTTTGACAAC 137548 29 100.0 32 ............................. CCCGGTAGCGTGGCGTGGCCATGACGGTCACC 137609 29 100.0 32 ............................. GCCGACCAGGCATGGCATGCAGGCACCATGAC 137670 29 96.6 32 ..A.......................... CCGAAAGTCATCCTGCAACCGTCCATTAACGA 137731 29 100.0 32 ............................. TTCTCAAGATGGATGCTGGGCGTCATGTCCGG 137792 29 96.6 32 ...C......................... AACGTGAAGGGCATTTCCGACGCGGCCAAACA 137853 29 100.0 32 ............................. CGCCACCAGCGCACAACGCCACGACGGCAATA 137914 29 100.0 32 ............................. TGTTCGGCCAGCTCACCTCGCTGCGCCCCTTC 137975 29 100.0 32 ............................. TATATATAGAAGCTACATCTAGTGGCGCTCAA 138036 29 100.0 32 ............................. TGCGCCGTGAACCGGTCGCCGGCGGGACCACC 138097 29 100.0 32 ............................. AGGTCGTTATCGCCCAGAAGGTCAGGATTCTT 138158 29 100.0 32 ............................. CCGTTAGAACTCATGGTATTGCTCCTCGTATC 138219 29 100.0 33 ............................. CAAGCTGGACGCCGCAAAAAAAGGTAAGGAAAA 138281 29 100.0 32 ............................. CGACGGCAAAGGGTCGGGCAGGTCTCCGTTCG 138342 29 100.0 32 ............................. CAGCCACAATCCGGCCGTGATGCGTGCGCCGT 138403 29 100.0 32 ............................. CCGTCCCGAACTATCTGCTGGACCGGGATTAC 138464 29 100.0 32 ............................. GCCCGCGCACGCGAAGTCGGGGCCCTCCTAAA 138525 29 100.0 32 ............................. TGCTGCGCGTCATCCAGGTTAGCCATGTTAGG 138586 29 96.6 32 .........C................... GCCTGGTTGGTGTCCAACCGGTCCCGGTCCTG 138647 29 96.6 32 .........C................... CAGTGAGCCCGTCGGGCGTCACGAACCGGCCG 138708 29 100.0 32 ............................. GCCGCATAGGTCGCGTAGGCCGAACCGTAGAC 138769 29 96.6 32 ......................C...... TACCCCCTACCCCTCAGAATCGTTGGAATTCC 138830 29 96.6 32 ................T............ AAATTGGAGGAACAAATGGCTGATGTGACCAA 138891 29 96.6 32 ............................G ACTTTCCGCCTCCTCGTGCACCTCGTCCCAGC 138952 29 93.1 0 ...........................AT | C [138977] ========== ====== ====== ====== ============================= ================================= ================== 81 29 99.4 32 GTGTTCCCCGCATGCGCGGGGATGATCCC # Left flank : TATGGGAATGAATGAGCGCGTAAGGATTGGGCTCTGATGGTCGTTATCGTTTTGACGGCATGTCCGGTCGGGCTCCGAGGCGATTTGACTCGCTGGCTTTTCGAGATTTCGCCAGGGGTGTTTGTGGGGCATGTTTCCGCCCGTGTGCGAGACCGGTTGTGGGAAAGAGCGCTGGGCCTGGTAAAGAGCGGAAGGGCCATTATGGTCTATTCTGCCCGTAATGAGCAGCATCTTGCTTTCAAAGTTCATCGGGCCGATTGGCTACCGGAGGACCACGATGGGGTCGAGCTGGTCAAGCGCCCATTCGGCAGTGAAAAGGCATCAGTCTCCGGCAGTCAACAGCACGGTTGGAGCAAGGCAAGCAAATACCGGAAAGCGCGCCGCTTCAGCTACCATTGACCGTCATCCTCAGTTTTTCCCCGCCTCACCTCCACTGAACAAGTAAATGTAAAAGCCATCTTCTGCGATAGCTATTGCTGCAATACTAACGATTCTCAAGT # Right flank : TTCCTGGATGACTCAAAGCGAATATGTAGGGTCTACCGGAGGAGTTGCTCCGCGTACGGCTGGATGACCTCATATTCCGGGTCCTTCGCCAGATTCTCGACCCCCTGCGGGAACCTGGCGTACAGCTCGGGATGATCGACGGCGATATCAAGGGCGTCGGCGATGGCCAGGTCGGGCTCGCCGGCGAAAATGGCTTCTCTTGCAAGTTCCTCGCAATCTTCGTCTAACCCGGCTACCACCTTGAGGGACTGCTCAGCCAGATCCGTGAGCTGGTCAAACGTATAGTTCACTTCCCGCCTCCCTGTCTCCGAAGCTCGTCACGGTTGACTCCCGTGGGGGATTCTACCGTTTTTCGCGTTTCTGATTACGCCTGTGCCTTCGGGCGGGTATGTTCGGTCAATGTAGTATTCCCGCCTGCATGGGGATGATTCTTTGATTCGACAGTTGCGGTACACAGACGTTTCGTGCCCTCCCCCTCCCTGTGCGTTCGGGGATGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //