Array 1 16615-18548 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOZV01000193.1 Ligilactobacillus salivarius strain OSU_LaSali_1.14 contig_1605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 16615 36 100.0 30 .................................... TATTTGTGGAGGTTATGATATTTGGATCAT 16681 36 100.0 30 .................................... TATCTATCGTATTTATCCGCCTTAGGTTTA 16747 36 100.0 30 .................................... CTGCGATACTGTATATACCTTGAGCAACTT 16813 36 100.0 30 .................................... AGAAAGCCAAATGAATAGTGGTTGGAATAA 16879 36 100.0 30 .................................... TCTGATAGCCAGAGAAATGAATATTGTAAA 16945 36 100.0 30 .................................... ACGTTTGACTAACGTAAGCAAAGTTAAAGC 17011 36 100.0 30 .................................... AGTAATGAATAGTTAAGTATAAGCGTTTAT 17077 36 100.0 30 .................................... TAAGCCCGTTAATAGTGGTGATACACAGCA 17143 36 100.0 30 .................................... TTATCTCTATGAAGAAATTCAAGCTATTTA 17209 36 100.0 30 .................................... TGGGTCAATTAACTACAATGTTATGACTAA 17275 36 100.0 30 .................................... TTCACAAAAAGCTATCAAAGAGACTACTGA 17341 36 100.0 30 .................................... TAACCGCTAATGTTAGATATGACGAAAGAT 17407 36 100.0 30 .................................... TTAAAGCAGTTGGCAAGGTTGGAGATGCAA 17473 36 100.0 30 .................................... GAAGTTTTACATTATGAAGCCCAAGCAAGG 17539 36 100.0 30 .................................... AGCGTATGTTGACGCTTATGATGGTTGGTT 17605 36 100.0 30 .................................... AAAATTATATTATAAGGAGTGCGGTTTTGT 17671 36 100.0 30 .................................... AAGGCGGTGAGATTAGTTGCAATGGCTAAA 17737 36 100.0 30 .................................... ACGGTATTAGTGGATCTAGTTCCGCTGGTA 17803 36 100.0 30 .................................... AAAGGGCTTGAGAAACAAGTTTGGTCAGAT 17869 36 100.0 30 .................................... ACAGCAATTTATAAGTTATCTCGCGATTGG 17935 36 100.0 30 .................................... CAATTCACACCGCAGTTCAATCAGCTTACG 18001 36 100.0 30 .................................... TGCTTTACCTTTTAATGTGTCTTTAAGCGA 18067 36 100.0 30 .................................... AGAAATCACATACAAGCTGCTATATGTTGG 18133 36 100.0 30 .................................... TAACGTTGTAGCGTTTCTATACCGGCCAGA 18199 36 100.0 30 .................................... CAGATTCCATAATCTTTATCTACGTTCTCT 18265 36 100.0 30 .................................... AAATTGATATTTTAACACGCTACCACCATC 18331 36 94.4 30 ..................................AT GGTTCTGAGCCTAGTTAGAATGACATAGGT 18397 36 80.6 80 ..........A..A......T...T..A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTGTTTTAGAGTGGTTAGTTTAGGTATTA 18513 36 83.3 0 ..........A.........T....G...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 29 36 98.6 32 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : AACAGACCGAATTGGTAAAAAATATATGAAYRTRTTGATYAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCATATTCGAGAGGTTTTGTATAAAATTGATATACCMTTACAAGTAGATTATGACAATGATTTRACAAGACTATTCAAGTACTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCATATGATAGAATATCTTCAGATGTTAAATTACATGTGGAATTAAATAGAAAAAGAATTATAGGTCTAACCAACGTCGCGCATTATCTTACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGATTGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTTCTGGTAGATTTTTTTAGTGYAAAAATTTTKKAKTTTAWRMTATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGATTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGAAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAACTAGGGAGGGGGAATAATAATGAACTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 839-3050 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOZV01000071.1 Ligilactobacillus salivarius strain OSU_LaSali_1.14 Contig_186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 839 36 100.0 30 .................................... AGGACTTGAACCTGAACCACACTCCTCGGC 905 36 100.0 30 .................................... AGAGAATGGGGTTTGATAGCAAGTCTGCTA 971 36 100.0 30 .................................... CTACTTTAACAGTAAATAAAACATGGAACT 1037 36 100.0 30 .................................... TGTTACAACGCTACAATCTATGATTATGGC 1103 36 100.0 30 .................................... TTACTAACTTACCACCAGACTTAGCTGTGT 1169 36 100.0 30 .................................... GAAATATTACATTGAGACCATTCTATCACT 1235 36 100.0 30 .................................... GGATCCTAAAAAGTTGATTGAAGACGGATT 1301 36 100.0 30 .................................... ACTCAACACTACCGTCGTTATCCATTTCAT 1367 36 100.0 30 .................................... ATCAGCAATGGCAATAGAAACGGTTTGATT 1433 36 100.0 30 .................................... ACATGGAATCATGATTTTGAAAGGACTCAT 1499 36 100.0 30 .................................... GCAATTGATAGAAGATAAATTAAAAGAATT 1565 36 100.0 30 .................................... CAATGACAGGAGATTATATATCAAATGATA 1631 36 100.0 29 .................................... CTAATGAACGAAAACTTTAACAACCAAGC 1696 36 100.0 30 .................................... TTTAGATCACCATTCAAGCACTTTGCACCG 1762 36 100.0 30 .................................... GTAGTTCCATGTTCTTTACTGAACCATTTT 1828 36 100.0 30 .................................... AAAAGTAACTACTACAGCAACAACAGGCGG 1894 36 100.0 30 .................................... GCTTTTGTACGCTTGCTAGATAACCAACGC 1960 36 100.0 30 .................................... TTTATTTTGGAGAAAAACTTATGAAAGATA 2026 36 100.0 30 .................................... TAGGAGTTGAGACAATGACCGAAAGCGTGG 2092 36 100.0 30 .................................... ATTGCAATTATCTTGTTATTAATGTTGCCA 2158 36 100.0 30 .................................... ACGCTGGGGAAATTATTGAAGGGACTACCG 2224 36 100.0 30 .................................... CGTGAATATACATAAGCTACTGGAGCAACT 2290 36 100.0 30 .................................... AAGTAACCCCAATTGAGCCTTTTGAAACTG 2356 36 100.0 30 .................................... TGGTAAAAGGTGCAACTTTAGAGAATCCAG 2422 36 100.0 30 .................................... CTAGATTGATATTAGGAACTGATAGACGTT 2488 36 100.0 30 .................................... TGACTTATCGACTAATATATCATGAACCTT 2554 36 100.0 30 .................................... TTAAACACGCTTATCCGTTGACTTTCAACA 2620 36 100.0 30 .................................... ACAAAATCACTGAGTAAATCTACACCATCT 2686 36 100.0 30 .................................... AACCAACTGACGCTAATACAGTAACTGAAA 2752 36 100.0 30 .................................... GACGGATCATAAAACGCCTTTTTATCTCCG 2818 36 100.0 30 .................................... AAGGGTTATCAAGAACATGTACAAAATCAA 2884 36 97.2 30 ........................T........... ACTACCTATTACTTTCAAACGTTGTCCTGG 2950 36 94.4 30 ........................T..........T GATCTACGTTACATTTTCTTAATGTTCACA 3016 35 86.1 0 ......T...A.........T....G.........- | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.3 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : AACAGACCGAATTGGTAAAAAATATATGAACATATTGATTAAGAAGATTATCGAAAATCTTACAGACGATGAAAGACAGGCAATACTAAAATCAGTAAATAGTTTGTATGATAGGATTCGAGAAGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTGACAAGACTATTCAAGTACTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCATATGATAGAATATCTTCAGATGTTAAATTACATGTGGAATTAAATAGAAAAAGAATTATAGGTCTAACCAACGTCGCGCATTATCTTACAGAAGGAGAATTTCAAGAACTTGTAAGTCTTGTTAAGATGACTAATTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGTACTGATAAATTGTTAAATTTTAATTATAAATTAATA # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //