Array 1 92751-95493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRO010000008.1 Listeria booriae strain FSL L7-1497 NODE_8_length_153956_cov_29.316950, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 92751 30 100.0 35 .............................. ATTGGAATTATTATTGCATTGATAGCAGGGCTTGT 92816 30 100.0 36 .............................. TAATTTCAGACAAACCAAGTATTTCAGCTACTTCTT 92882 30 100.0 36 .............................. TTTCTTTTTTCACAGCTTGCACGGCGGACCTTATCT 92948 30 100.0 35 .............................. TAGCGAAAGTCTCTGATTTTTTTCAGGTTTCTACT 93013 30 100.0 36 .............................. AAGGTTGTCCCTGTATCTCCAGCAAAGATAGCAGTG 93079 30 100.0 37 .............................. GAATTCATCCGTTTCACCTCACAAACTGTTAATTATT 93146 30 100.0 37 .............................. TTTGGAAATTCAATTTTCCCCTGTAATGAGCTTTTCT 93213 30 100.0 41 .............................. CGAGGTTCCCTGTGGCTTCATTCCAAACAAGAGGCTCAATA 93284 30 100.0 38 .............................. GTGCCTGTTGCCTCACTAAACAGGTAAAGCGATTTTAC 93352 30 100.0 34 .............................. CGAGCGCCGTACAGTTCGGGCGTCAGCAAGGGAA 93416 30 100.0 36 .............................. ATTGCTAACGATTATCCAGTCATTGCAGATATTCTC 93482 30 100.0 35 .............................. GCCACTCTCCCATATCGTAGAATAGAAACTACTGT 93547 30 100.0 36 .............................. TCATCTACTTTGTTTTCGAATACTTCGAGGTATTTA 93613 30 100.0 36 .............................. TTTTTCTTTCGTGTAATCTTCATCCTAGTCACCTCT 93679 30 100.0 37 .............................. CAAAATCGCTAAGCCCTGTTGCTTGAAAGGCGCCTTT 93746 30 100.0 37 .............................. TTATTTAGTAACGCTTTTGCAAAGCCTCGACGTAAGG 93813 30 100.0 35 .............................. CTGTTTGAATTCATTTAGTTTGCGTGCTTGCTTAT 93878 30 100.0 35 .............................. TAGCTTTAAGATAGCAGAGATATATTTAATTTGCA 93943 30 100.0 37 .............................. ATATTGAATGTCCGTAGTAATGCCTCGTGATTCTAAA 94010 30 100.0 37 .............................. TTGCGTTTAGCGGCTTGTAAACAATATTCCAGTTGTC 94077 30 100.0 37 .............................. GAAGAACTACCAGATAGACCGTATCGACTTAGTTTAT 94144 30 100.0 36 .............................. GCAATATGCACGATACCTTGTTGGTCTTTAATCGCC 94210 30 100.0 37 .............................. TACTTTGAAAATCAGAAAGACTGGCATTTAATGCAGT 94277 30 100.0 36 .............................. CTCCGGAGGGTTCATATGATGCGAATGCTAAGCCAC 94343 30 100.0 36 .............................. CAAAATGACAAAGCGTTTGGATTCCAAGTGCATCAA 94409 30 100.0 36 .............................. AATTGAGAATCAGGACGCCTTAAAGCTAATCGAACG 94475 30 100.0 36 .............................. TCGGGCGATAAACTCGAAAAGGTAGCCGACTACTTT 94541 30 100.0 36 .............................. ATATTTCCAACACCTCATGAGCGTAACTATAAACGT 94607 30 100.0 36 .............................. TTTTTCAGCCTCCTATTTTAGTAGTTCTTCAACCTC 94673 30 100.0 36 .............................. TTTTTTACTTTGAATAGATTTGTGAAAAACAGAATC 94739 30 100.0 37 .............................. AACAAAGAATTGTAGAAGAGCTTAGGGCGAAGTTTGC 94806 30 100.0 36 .............................. GTCGCCAGATTTTACGTTGTCGCTGATTTGTTCTTC 94872 30 100.0 36 .............................. TCAGTATCAGCAAAAGTTAAAGTGAACGGTAGTGAT 94938 30 100.0 37 .............................. CATTTTTGCTCCGCTTCTTCCATTAGCGCCTGTTTTG 95005 30 100.0 36 .............................. GTCGTAATAATCAGCAGAATTAAGCCCGCCACAATG 95071 30 100.0 36 .............................. TGAATATCAAAGATAATTACCTCAGTAGTCTTGACG 95137 30 100.0 36 .............................. TCGGTTTTCAAAGGGCTGCCCGCGTCGAGGGCTCGA 95203 30 100.0 36 .............................. AGTGGAGAGGTTAAATTAAAATTGTTTGCGATGTTA 95269 30 100.0 36 .............................. TTAAAATATATCAGCAAGACACAAGCACAACTCGCG 95335 30 100.0 36 .............................. TCTTGTATCAATTTCTTCTGTAGTGCCAGGCTTGTG 95401 30 100.0 34 .............................. CCGTGACAGTTCCCGTTAAAAGCGCTGTGGATTC 95465 29 86.7 0 .............C...A.....-.....C | ========== ====== ====== ====== ============================== ========================================= ================== 42 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTGGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGGGATGGTGACAAGTGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGATTGAGTCTATTTTCGAAGCTCGGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : CCCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAATATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGTCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATCTTTGTGAAAACGTTTGCGATAACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 12278-14668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRO010000025.1 Listeria booriae strain FSL L7-1497 NODE_25_length_29265_cov_25.504317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12278 30 100.0 35 .............................. TTTGTAGAACGACGGTAGTACCAGTCCTAGACAAC 12343 30 100.0 36 .............................. CATGCTTACCGTACCTGAATTTGTGAACAGATATCA 12409 30 100.0 35 .............................. ACGAATAGATCTTCGTTTTTCATAGCATCCAAGCA 12474 30 100.0 37 .............................. TACGTTAACGACGGAATATTCAAATATTTTGTAACGA 12541 30 100.0 35 .............................. CAAATTTCTGTTTATGCCCATCTTCCTTCATTTTT 12606 30 100.0 36 .............................. AGATGAGCCGACAGATTTATTACAAGAGAAAAAAAT 12672 30 100.0 35 .............................. CAATACAAAGTTCAAAATAGTAATGGTAAAACGTT 12737 30 100.0 35 .............................. CATGCTAATGTTCGTTATGAATTGATGGCGTTTGA 12802 30 100.0 36 .............................. AAGGTTACTTATGATGTTCAAAATCAAAATAATATC 12868 30 100.0 37 .............................. ACGATTAACCGAGAAATTGGCGGTTATACCGAGGGCA 12935 30 100.0 36 .............................. CACGTGTCAAAGTCGTCACCCTCGTCGTCTGCAATA 13001 30 100.0 34 .............................. TTTACTGGCAGAGAGATAGTGTAAATCACCACGC 13065 30 100.0 36 .............................. CTTCCATATTCAATATCTCCACTGGCATCAGCTGGT 13131 30 100.0 35 .............................. ACGATTGATCCCCGCGCGTTTGGCTTGCTATAAAT 13196 30 100.0 36 .............................. ACTAAAAGTGCAAACAATCCATTCTTCAAAAGTAAG 13262 30 100.0 36 .............................. ATGGTTTCGATTTGGTTCAAAATTTTAGAGGGCGAA 13328 30 100.0 35 .............................. ATGTAATCATAGCCCTTGCCGTTAAAATGTACTGA 13393 30 100.0 37 .............................. AAAGTAACGCAAGAAGATCAAATTTCAAACTTGTTAG 13460 30 100.0 36 .............................. ACTCAAATTGCAGAACCAGAAAAAACAGTCAGCGAT 13526 30 100.0 36 .............................. ATTTTCGTAAACGTGCCTTCGTGTCCTCACTCATTC 13592 30 100.0 36 .............................. TCATGTATTCTGCGTTTTCTTGTGTCGTGTCTATAA 13658 30 100.0 35 .............................. CTTTCAAAGTCTTCTACATATCGCATGTTATCAAT 13723 30 100.0 37 .............................. AATGAATTCACTTTAAATGATGATCCATAAGCCATGA 13790 30 100.0 35 .............................. TTGTCATGTCCATTTCAAGCGTTACTGTTTTATTT 13855 30 100.0 35 .............................. TACACCTAATCTATGCTTGTTTCCAGCGACAAACT 13920 30 100.0 37 .............................. ATCGTTAAAATCAAGATTAAAACCGTGTTCTGTGTCA 13987 30 100.0 35 .............................. GGTAAAACATCCATCATTATAGATCATGTAGGAAA 14052 30 100.0 36 .............................. CTTAATATCACAGACAATAATCTACCATTTTAAAAG 14118 30 100.0 36 .............................. CTGGTTGCCGCGATATGGGAGCAATGATGGTACAAA 14184 30 100.0 35 .............................. CTCAGTAAAAACAAGGCTGATGCAAACAAATAGAA 14249 30 100.0 36 .............................. AAACACGATGTATATTTAGAGCCTTTTTTTGGATCA 14315 30 100.0 36 .............................. ATTGTACGTGCCGTTACCGAAATGATGGTTGACCGC 14381 30 100.0 34 .............................. TTCTATCGTATATTGTGTATCCGTCCGCATCTGT 14445 30 100.0 34 .............................. ACGAAAGTTTAAACCCACTAGCAACGCTCCTTAC 14509 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 14573 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 14639 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCCATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 76009-73356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRO010000009.1 Listeria booriae strain FSL L7-1497 NODE_9_length_142336_cov_24.357151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 76008 30 100.0 35 .............................. GTTTCTGTTCGCTTTCTGCGCGCCATACATACGCA 75943 30 100.0 36 .............................. ATACAGTAACAATGCAAGATGCTAAAACGGGGGAAA 75877 30 100.0 36 .............................. ATCATTAAAAAGCAAACGTAATTTCTTGATATTTTT 75811 30 100.0 37 .............................. CATCGAGTAGCGCGATGAAAGGAAAGACTGGTGGGAA 75744 30 100.0 35 .............................. TTGTAAAAGCACCAACGGAAAAAATAGCAAAAGAA 75679 30 100.0 35 .............................. AAACGCTTAAAGGCTAAACTATAATGCGAGAAATC 75614 30 100.0 35 .............................. AATGAAAAAATTGTTAAAGATAAAAAAGTTTATAC 75549 30 100.0 37 .............................. AGTATTTCAGCTACTTCTTTTTGAGACATCTTTTTCT 75482 30 100.0 35 .............................. ATAATTTGCGACAGTTTCTAAAACCAGATTTTCAC 75417 30 100.0 37 .............................. ATATTTTTTTAATTGAAAACGATACAAAATGTATACA 75350 30 100.0 35 .............................. AAATTTAAATTCATTCCACCCTTGCGCAATACAGT 75285 30 100.0 36 .............................. TTGCTTCTGCTGTTTTTTGTAAAGCTAGAGGCATTG 75219 30 100.0 35 .............................. TTCAAACCACGATGGATATATATACGCACATTCAT 75154 30 100.0 35 .............................. ACTAGAGGCTGTAACGCCTCATAGCTCGTAAACTG 75089 30 100.0 37 .............................. TAAGACTGCTAGCATGCATCATCGCCTTAAATCCATA 75022 30 100.0 36 .............................. CTTCGATACTTGGTGTAATTCAACCGTTTATCTTAA 74956 30 100.0 36 .............................. TTTGGTATACGAATAAAGCGCAACGGCTTGGTGTGC 74890 30 100.0 37 .............................. ATCTCTATACCTAAACAACATCACTAGTTTACCATAT 74823 30 100.0 36 .............................. TCTGTCAGCGGCTGTGCGATGCCAACAACATCTGTG 74757 30 100.0 35 .............................. TTTATTAATTGTAATAAGTCCTCACATTTAGCTTC 74692 30 100.0 36 .............................. TTTGTTTTGAGGAGGTTTGGCGTATTTGGATATTTC 74626 30 100.0 37 .............................. TTGGCACGGTGCTTGTTGATGAAGAATACTGCCCACG 74559 30 100.0 36 .............................. AAAATTCGCGTACTAACGCCGCTTCGTAGTCGATTT 74493 30 100.0 34 .............................. GTTGTAGTTGGAGATATTTTTAAAGTTGAAACGA 74429 30 100.0 36 .............................. TCCGTCCCCGCCATCGGCATCCAGTATGCCGTACCT 74363 30 100.0 35 .............................. CTCATTGGCAAGTATAAGTTAGCCACATTGGATAA 74298 30 100.0 34 .............................. ATGTAAATAATGCTAAAAAAGATGGTAGCTTCCT 74234 30 100.0 34 .............................. AGCTAATATACAAAAAAATAGTGCATCGGATTAA 74170 30 100.0 34 .............................. GTTCAATGGTAAATGGAAGGCTAACATCATTGTA 74106 30 100.0 36 .............................. TCAACTTATTTTTTCCGTTATACACGACAATAGCAT 74040 30 100.0 34 .............................. ATTACGGGGCAGTATTTGAATAAATCAATAAATA 73976 30 100.0 36 .............................. TTGGTTACATAAACGTTCATCTCCCTCGTACCAGGC 73910 30 100.0 36 .............................. ACTCCCCCTATAACGTTCAAAGTGTCCGGCGCCAGG 73844 30 100.0 36 .............................. TTTACAAGATGCGCTTAAGGTAAAAGTAGAGTCCGA 73778 30 100.0 34 .............................. TTGAATCAATATCACAGACATTATCCTTGTAGTA 73714 30 100.0 35 .............................. ACTACAGAAGGTGGAACAGATTCTATACAAGCTCG 73649 30 100.0 34 .............................. CCCCATGAATCATAATAATATCGCCTTTTTTAGC 73585 30 100.0 37 .............................. GTAAGGCTGTTAGTAACGAAAAATATCAGGAATGCAT 73518 30 100.0 37 .............................. TTAACCTGGTGCCTGTCATCACACTAGCACAGGCGAA 73451 30 100.0 36 .............................. GATTACGATGCATCAAATCATTTTATTGCCAGTATT 73385 30 93.3 0 .....................G..T..... | ========== ====== ====== ====== ============================== ===================================== ================== 41 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGTCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTACAAGACGGGAAGAAAAAGGTAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : GTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAATACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTTTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTTGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 82048-79256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRO010000009.1 Listeria booriae strain FSL L7-1497 NODE_9_length_142336_cov_24.357151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 82047 30 100.0 37 .............................. TCATTTCCCGCGGTTTCATCTACATGCGCGAATCAGG 81980 30 100.0 36 .............................. ACCCGATAAAAAAGCAATGATGTATGGGGCGTTTTC 81914 30 100.0 35 .............................. AATCTAACAACGACTTATACTATTACGCCTCCCGT 81849 30 100.0 35 .............................. ATAGGACTATTCTTTATTTCGAAATTCGAACGTAT 81784 30 100.0 36 .............................. TTTCGAGCGCCTTACTTCTGTCTGCTACGCCATCTG 81718 30 100.0 36 .............................. CAACTGGCGCTGTAGTTGGAGGTATTTTAACAGGAG 81652 30 100.0 35 .............................. TTGTTTTAATTTACCCTTCATTGTTTTTTCCATCG 81587 30 100.0 37 .............................. CTCTGAATCTTACTTGTATCTTCATAATTTCCTGAAC 81520 30 100.0 35 .............................. GCCTGAGATATAGAAGTAAAATCGCTCTGTTTCAT 81455 30 100.0 35 .............................. AAACTTCTTTTTCTGCATCTACATTACCGTTTAAG 81390 30 100.0 36 .............................. ATTGTATAAAGGAGGAATTGAATTGGACTTATATTC 81324 30 100.0 36 .............................. AGGCATGGTACCTCTTTTAATCGCTATTCAGCGTGC 81258 30 100.0 36 .............................. AATTGAAAAACTATATCGGAAAACAATTGACTTTTA 81192 30 100.0 37 .............................. GCATCAAAAACGACGTATTTATTTTCCGCCTCCGACT 81125 30 100.0 35 .............................. GTGAATGTTCCAAGCGTATAAAGCGTGTTATTATC 81060 30 100.0 36 .............................. ACGATTGATCCCCGCGCGTTTGGCTTGCTATAAATA 80994 30 100.0 37 .............................. AGAAATAGTTTTTAGGGAGATGTTGATATGAGTAAAA 80927 30 100.0 36 .............................. ATAAAAGCTATTGTTGTCAGAATAAATACAAATACA 80861 30 100.0 34 .............................. TACTTTGAAAATCAGAAAGACTGGCATTTAATGC 80797 30 100.0 35 .............................. AGCGCCATGGAAGAAGAACGGAACAAAGAAGAAAA 80732 30 100.0 37 .............................. TACATTGTTTATACGCATGCTTTCGAAAAAGACAAGC 80665 30 100.0 36 .............................. CGATAACGCAAGATGGTGCGATTGTGGCGGACTTTA 80599 30 100.0 36 .............................. CAGAATGCTATTTTCAATAAGTCTTCTATTCCCGCA 80533 30 100.0 36 .............................. ACCGATGTGAAAACCAATCTTGCTACCTACCTCGGC 80467 30 100.0 35 .............................. GCATATGAAAGTACGAATGTGGCGGTGGCAGTCAG 80402 30 100.0 35 .............................. CAATTCGACATTGCTCCAGCTTTTAATGCTGCATT 80337 30 100.0 37 .............................. GTTCTACTGATTGCGTACCTAGTAAATCGGTCAATAT 80270 30 100.0 36 .............................. GAGGCAATCGCAAATGATATCTTCACAGATGTCCTA 80204 30 100.0 36 .............................. CATGACTGATGTGGTCCTACTGATCGAATCTTTCAT 80138 30 100.0 36 .............................. GTTATTAAAGAGGTGTTCGAAGTACGCGATATGAAG 80072 30 100.0 37 .............................. ACACTTGAGGACCCTTTTCCTGCCGTGGAAATGTTGA 80005 30 100.0 36 .............................. TTCGGATATAAAAAAGGGGAAGACGGGGTTTTGGTC 79939 30 100.0 36 .............................. GTTGGCGCGAGGGGTACAGATCGAGGCACAAAGCAT 79873 30 100.0 36 .............................. AAAGCATGAGTGAAACCTTTTTCACCTTCAAAATTT 79807 30 100.0 35 .............................. ATTCTTCAATGATTTTTTTGTTTTTACTTACCTGA 79742 30 100.0 36 .............................. CGCGGAGGCGCAGGCGTAGATAACGGCGTGTTAATT 79676 30 100.0 36 .............................. ATATACGGAACTGGCGGGCTATCTTCTCCTTCATCT 79610 30 100.0 36 .............................. CTATCAATGAAATGATGGAAAGTATTGTGCTAGATA 79544 30 100.0 34 .............................. GCGATAGCAATATTTCTTGTTTTTTTCTTCATTT 79480 30 100.0 35 .............................. CTAGCAATTTCGGAAGCTGGAAAAATTTCATCGAA 79415 30 100.0 36 .............................. ACTTCTGCTATCGTTCCAAAAAAGCCATTCCCTGCG 79349 30 100.0 34 .............................. ATTTTTCAATAAATATAAAATCGATAGACTCAAA 79285 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 43 30 99.6 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTACTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTATATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATATACGCTCACCTTCTCACAAAATACCTAAATAAAAAATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAACC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //