Array 1 53093-49124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEGB010000049.1 Clostridium aciditolerans strain DSM 17425 DSM17425_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 53092 29 100.0 36 ............................. ATGTATGATGCTGTTGATCCACTAATCATTTTTCTA 53027 29 100.0 37 ............................. AAGGATTAAAGTTCTTCCATAACATAAAATTTTCTGG 52961 29 100.0 37 ............................. AAGTTACTAGAACTTGCAAGAACTATAAGCAAAAATG 52895 29 100.0 37 ............................. CTCTATGAAGCTAAATTTTGCTTCTTCATCATTTGAA 52829 29 100.0 37 ............................. TAATTCTTTCTTTGCCTGTAGCCTTCATAGCACTGTC 52763 29 100.0 37 ............................. GCAGGAGAACAGATAGATGATAAGTTAGTAAACGCGC 52697 29 100.0 36 ............................. TTATTTCAGTATAATCATGTTCATATATCATTCTAC 52632 29 100.0 40 ............................. GTTGAAAATAGTACTGAAGCTGTAATTAGTGGGCATGCTG 52563 29 100.0 38 ............................. GGGTTTCGACCGTTTGAAAAGGCATTAAAGGATTTTCA 52496 29 100.0 38 ............................. GTTTTTGCGGAAGCTCTTACAAGGGCAAATCTTCCAGA 52429 29 100.0 36 ............................. CAAATAAAGCATTTGGTAATAATTCAATAAAAATAG 52364 29 100.0 37 ............................. AGATAATCTTAAAAACATAAAGAGTAAATATACAGGT 52298 29 100.0 36 ............................. TTTATTATTATTCTTTGCATTTTGTATTCGCCAGTG 52233 29 100.0 36 ............................. GATATTGAGGCTTTGAAAAATCAACTTTCAGCCCAG 52168 29 100.0 36 ............................. GGGTATGCATTAAATGTATCTGGGTTAACTTTTAAA 52103 29 100.0 37 ............................. ACTGAAAATTGTGAAATGAATATAATTATATTCTTGA 52037 29 100.0 37 ............................. ACATGGAAATTAAATATTTTTGTTAATGCTATTAACG 51971 29 100.0 37 ............................. AAAAATTCATATGTGAAACGTGTGGAAAAGAGTTTAG 51905 29 100.0 35 ............................. TGGTGTCATTTTGTACTTTGCAAATGCTATATCTG 51841 29 100.0 36 ............................. ACAGTTACACGGTTTGAACTCATTACTGATAAAGGT 51776 29 100.0 37 ............................. TAGCACTTATATAACTAGCATTTACACCACTTAATCT 51710 29 100.0 36 ............................. ATAAGCATGGAGAAATTATAGAATATGCAAAGAAAT 51645 29 100.0 35 ............................. ACATATGGTTGGGCTGGAGTTTATAATAGTAAAAA 51581 29 100.0 36 ............................. CAGTAACAACCATGGATTTAAGGATGTACTTGGCTG 51516 29 100.0 38 ............................. TGCAATTGTAAATATGAGATATAAAGAAGAACAAATAT 51449 29 100.0 37 ............................. CAATGTCGTTTTTAAGTAATATTTCTTTTACTTTTGA 51383 29 100.0 36 ............................. GTAGATAATAAGGAATTGATAGAACAACTTAACAAC 51318 29 100.0 37 ............................. TGTAGTGATCTATAGAATTGCTATATTTAAAGTCAAA 51252 29 100.0 36 ............................. GGTAAATCTTTTGACAATCTTTCAACTTCTCTTTTG 51187 29 100.0 36 ............................. GTATATAAAGTAATCATTTTAACCTCCGAACATTAA 51122 29 100.0 37 ............................. ATTAAGTGTTGTTGCAGCTGTGCTATCAGCGTTTATT 51056 29 100.0 37 ............................. TCTTTATCGTTGTAGTTTCTTACTTGAAGTCTTCCGC 50990 29 100.0 36 ............................. TACTATTCTTCCAGGACCTAAATGGAAATTATAATA 50925 29 100.0 37 ............................. ATGAATGCTGCAGACGCTGAACGATTAACCCTACATG 50859 29 100.0 36 ............................. AAAGAGATTAAATATCTTTCAGGTATAGTTGATAGG 50794 29 100.0 35 ............................. TTCTTAAAGATTTCCCAAGTGTAAATTTTGCATTT 50730 29 100.0 36 ............................. TTTTAATCCAGGGATTTATTTCAATTAAGAATTTTT 50665 29 100.0 37 ............................. AAGTAACAAGGCTTAATTGCCTTAACAAGAACCTAGT 50599 29 100.0 37 ............................. AAAGGATATCTTTGTATACCGGAAGGAAGAACTTCAA 50533 29 100.0 36 ............................. TTCTTTAACTCTTGTAAGCAGCTCTTACAAATATTC 50468 29 100.0 37 ............................. AAATTTGGGAATAATTCATCTAGCTCCACAACTATCT 50402 29 100.0 37 ............................. TCATTTACTAAATTTATAAGTTCTTTTAACTTAGCAG 50336 29 100.0 37 ............................. TCAATCTACTTGGAAGCATGTCCAACAAAATATTAAG 50270 29 100.0 37 ............................. TAAGACCTTTGATAAAAAATATAGAGGGAAAGCACAA 50204 29 100.0 36 ............................. ACGACCGTGCATAGCTTTTTGGAGATTAAGAGAGTA 50139 29 100.0 40 ............................. GGAAAAGTGTTATACCTGGTAGACGAGAGCGGCTTCGAGC 50070 29 100.0 38 ............................. CCAGTAATTTATTTATAAGCCGCCTAGCGTTCCCTTTC 50003 29 100.0 36 ............................. ACAGGCGAAGAAACTGTGTTATTACCTACACCGCAT 49938 29 100.0 36 ............................. ATAAGAAACTAATAATAAAATATGAAAATACCATAA 49873 29 100.0 37 ............................. TACGTAAGTGGTGATACGAGCGTGGGAGATACTCCAG 49807 29 100.0 37 ............................. ATGCAATCTGTTCAATTTATTTCAAAAGAACCAGAAA 49741 29 100.0 35 ............................. TTTTAATAAGTATGAAGTTAGTATGATACAAAAAG 49677 29 100.0 35 ............................. ATAAAAATCCTTTCTTTACTTCTAGCATGGGATAA 49613 29 100.0 38 ............................. CTCTTTCATTTGAATTAAAATGATAATCCAGTTTCATT 49546 29 100.0 37 ............................. CAGGTCCTATTTTATTATATAAGTCCACATCTCTTTG 49480 29 100.0 36 ............................. TAATTAATTTCAAATCCTGTTCTGTAAAGAATAATA 49415 29 100.0 37 ............................. GTTTACAGTTGTACCAATAGAACTTGCAACACCTAAG 49349 29 100.0 36 ............................. TAAATATTTTTAAATGATATACTTGTAAATTTATTA 49284 29 100.0 37 ............................. ATATATTTTCAAATTACAATATCAAATTAGATGGTAT 49218 29 96.6 36 ...........................G. GTGTCTATTACCTCTATTTCTTCTGGAAACTTAGCT 49153 29 82.8 0 A...............AT..A...A.... | G [49126] ========== ====== ====== ====== ============================= ======================================== ================== 61 29 99.7 37 GTTTTATATTAACTATGAGGTATGTAAAT # Left flank : AAAATAGATTATAAGGGTTTATAGTAAATCTATGAAAAGTGTGGTGTTAACTATATTTGTTATTTTAACCTATGATGTCGGAGAGAAAAGGGTAAATAGAATTAGAAAAATATTGAAAAAGTATTTAGTGTGGACTCAGAATTCAGTTTTTGAGGGAGTTATAACAGAAGCTAAATTACATAAATGCTTAGCGGAAGTAGGGAAAAGTTTAAATAAGCAGGAGGATTCCTTATATGTTTATAGAATTAGTAATCCGAAGAATATAGCAAAGGATGTGGTTGGTAAAGAAAAAGGTTACGATGAATTATTTTTATAAATTTGCAGTAAACCTACTTTTTTCGCAAGTGAATGAGAAGGCTTGATTTTTCTAGCTTAAGAGGGTTAAAACTTAATTTGAGAAATTCACTACTGGAGCCTTACTGCAGAAGTGACGATTTTGTAATCTTTTTATGTGAAGAAAAGCTAGTATTTTCAATGGGTCTATTATTTTTATTTGTTGG # Right flank : ACAAAGGGAGACCTTTATGAATACTTACTTTCAAAAGTTACTACAGCAGGTACAAATGGACAGTTTAGAACACCAAGACATATAATTGATATGATGATTAAATCAATGAAACCAACACCAGAAGATATTATAGTAGATACAGCAGCGGATATAAAAGAAGGAATAAATGCTGGAGTATGGTCTGTAGGAGTAGTGATTGGAAGTTCACAAATGGGACTGAGTTATGAGGATTTTGCTAATCTTTCAGAGATAGAAAAAAATGAAGCTATTGAAAACACTCAGAAAAGTTTTTTAGACATTGGTGCGGATTTCACTATAAAGACAATGAAAGGACTTCCTAAGTTAATTGAAAGAATTAATGCTTTGATTTCAGAGGGTAAAAGACCAAATGCTAAATAGAATTGAGTTAAATCGTGAAGATGACACCCTAAAAATGAAAATTGCACAGATGAAAATCCAAAGGCATCAGGATGAATAAGTCCTGATACCTTTACTTTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 155651-152865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEGB010000005.1 Clostridium aciditolerans strain DSM 17425 DSM17425_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 155650 30 100.0 37 .............................. ATAAACAAGTAAAGGAGAGTGGTAAATAGATGTTACG 155583 30 100.0 36 .............................. AATATCCTGCGCGGAGGTTATTTAGGAGGTATAAAG 155517 30 100.0 37 .............................. AGAGAGTCTACAAGTTCTTTTGTTTCTTCGCTCAAAC 155450 30 100.0 35 .............................. CCATTATGATAGTTCAAAGTAATAACTAGCTGCTT 155385 30 100.0 35 .............................. GCAATTTTAATTTGTTCTAAAACATCTAATTTTAC 155320 30 100.0 36 .............................. TGCTAATTCAGTTTTAAATGATAGCGAAGGTAATAC 155254 30 100.0 36 .............................. ATAGTAGTTAAAGATTCGAGTGATAACCAAGTTAGC 155188 30 100.0 35 .............................. TGTGATAGTATCCACATTTCTTTTTATTATAAGTA 155123 30 100.0 36 .............................. CCTCAACATAATATTTTACGACAATATTTAGAAAAT 155057 30 100.0 36 .............................. ACGAATGCTTCAATTAAGCTAAATGATTTAGAACTA 154991 30 100.0 36 .............................. TATAAGCATTCATATTCTTACTATGAATTTCTGTTA 154925 30 100.0 36 .............................. TAAGGACTGATAAACACTTTGGAAAATCCTTCTTTT 154859 30 100.0 35 .............................. CTAATGCATCCGACTTTATAAGTTTCTTAAATCGT 154794 30 100.0 37 .............................. GCGTTGTGGGTAAGTCTATGCATTTTGCATAGGCTTA 154727 30 100.0 36 .............................. TTTAACTCGAACACGAAAGTACCGCTGGTTATAACT 154661 30 100.0 35 .............................. GTATTATTAAAATAAGTATTATTTATATCAGTATT 154596 30 100.0 36 .............................. CTTATATAAAATTTTTCACTTGACAAATTATGTGTA 154530 30 100.0 35 .............................. GAAGGTTGGGGGATATGTTAAAGGAGCTACAGCTA 154465 30 100.0 35 .............................. AACTCAAGAGCAACTTCAACAAAAGATTTATCAAG 154400 30 100.0 36 .............................. ATGTATTTTTCTATTATTTCCAATACATCATTTGTT 154334 30 100.0 38 .............................. TGTCATTGTATAATACTAGCATTTGCTCAACTACTGAA 154266 30 100.0 36 .............................. AGGCCAACGTTAAGGCTGTGTGTAGCAAAGGTATGA 154200 30 100.0 36 .............................. AGCTAGTACAGCACAAGAGGAAGCAACAAAATTTGC 154134 30 100.0 34 .............................. AAGTTAACACCATTTTTAGTACAGAATTCATAAC 154070 30 100.0 36 .............................. ATTGAAAGGGGCTACGCTATTGAATTGCAAGGATTG 154004 30 100.0 34 .............................. TTTAATCCTAGAACTTTTGCGACCTCTGGATAAA 153940 30 100.0 36 .............................. CCAAAATCGGTAGCACTATATTCAGAACTTAGATGT 153874 30 100.0 34 .............................. TGGGATAAAATAATTCCTTTTAATGAGTTATGGA 153810 30 100.0 34 .............................. AGAGTCAATGCACGTTTTTCATCACTGGCTTTCT 153746 30 100.0 35 .............................. AGTGATCCTTGGGCTAGTAAATAGTAGGGAGGAAT 153681 30 100.0 37 .............................. ACAATATCCTACATGCCACTCAAACAAGTCGTTACCT 153614 30 100.0 36 .............................. GGGAATGATTATACTGAAATTAACATAATGAAAATA 153548 30 100.0 37 .............................. TGAGTGCGAAGAATGTGGAAGTGAAGATTACGGAATT 153481 30 100.0 36 .............................. TACTTTTATATATGGCATAACCTGTCCCTGCTACTG 153415 30 100.0 36 .............................. TGCCAAACCGTTAAACCATTATTAAACATACTGTTT 153349 30 100.0 34 .............................. ACATTAGGAGGTATTAAAGAAAGTGTATTTGAAA 153285 30 100.0 35 .............................. TTTGTTAACCACCTCAATTTCTTTTTCAAGAAAGT 153220 30 100.0 35 .............................. AAGCTTTAATCCATTGTACTAACTCAATATTATTC 153155 30 100.0 36 .............................. TGACATAACGCGGCCTCTTGCCTCTGCTCTGCTGCG 153089 30 100.0 35 .............................. AATAACTCCTGTTTTAGATGTCGAACAAGATAGTT 153024 30 100.0 34 .............................. AGAATTTATTAGCATTACTATTCATAATCTCTCG 152960 30 100.0 36 .............................. GTTTATGTATATATTCTGCAAAGTGTTTATAATTTC 152894 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.9 36 GTTGAACCATAACATAGGATGTATTTAAAT # Left flank : TTCACCATTTAGTCTAAAGGAGATGATGTAAAGTGGGAAAGATAGAAAATCATAATTATGCTTTTGTGTTTTATGATATAAATGAAAAAAGAGTACAAAGAGTTTTTAAGGTTTGTAAAAAATATTTTAAGCATCATCAGAAGTCAGTATTTAGAGGCACTATAACACCATCTAATCTAATAAAACTAAGAGCGGAATTAAAGAAAGTTATAGATGAAAAAGAGGACTTTATTTCTATAGTTAAACTAATAAATGAAAAAAGTTTTGATGAAGAAACTTTGGGTGTAAATTTTAGTAATAGCGAATCATTAATACTTTAAGCTTTTCCCAGCTGACTAAAAAATATAAATCTCTTTTAGACTTTCAAATTAAAGGGATTGGAGAGATTTTTTTATTGAGTTTTTTAAAATGATAAAACGGTTGGGAAAATTTTTGAAGAAGTCTTTGTTTTCAATGGTTTAAAGGTTATAATAAAAATAGAGAATGGCTATTTTACAGTG # Right flank : AGTGCTTCTTGTTCAGAAATACTAAAGTTTTTATCATTTGCACCTTAACATGACTTAGATGCTTTTTACATATTCAAAATAAAACCTGGCATCCTATGATAGCCAGGTTTTGCTTATTTAATCTAATTGTAACTCATCAAATCCATTTCCTTTTCCCCATGCATAGATTACAGGAACAAGATTGACAAATGCAGATTTATCTACTTTTGCAACAAAATTTTTAACAACCATTGCTTCTCTGGTAGAGCAAATCAAGATAACTTTTCTTTTAGGCTTATTAGAATAAGCACCTAAAATTTGGCCAATACTAACTCCTCGGTTAATTGTATTCATGATAAAATCAGAAATTTCATCTGTTTCGCTACTAAGGATAACCATTTTTACCAAGGATGATCCAAATCCAAACAGGATGGTATCAACTGCTTTTGTATATATCATCTGCATAATAATAGCATATAATATTGCAGTATGTCCAAAAACAAATCCAGACAAGACAAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 169791-166806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEGB010000005.1 Clostridium aciditolerans strain DSM 17425 DSM17425_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 169790 30 100.0 36 .............................. ACAAAAGATATAGAAGTATCTACTGAAGCTATTAAA 169724 30 100.0 35 .............................. TCTAAAAACTCTTCTGTTACATTTAAAGAGTCAGC 169659 30 100.0 35 .............................. GGAGTAATTATACTTTCTTCTTGCTCCAAATATTT 169594 30 100.0 36 .............................. TGAATTAAAGTTTTTGATGTCTGATCTAATGACATA 169528 30 100.0 36 .............................. ACATTAATTTCAAATGTATTATTGTAACCACTCTTA 169462 30 100.0 36 .............................. AGAAAAAACCTCATAAATATTTATGAAAAGTATTGG 169396 30 100.0 34 .............................. TTAAACATATAAGATAATCTATTTGAGCTATAAA 169332 30 100.0 36 .............................. AACATTAAGAACTTTCTTCAGATTATACCTTAAGGA 169266 30 100.0 34 .............................. TTAGAATTTAATTTTTTTTCTTTCCCTTCATTAA 169202 30 100.0 35 .............................. ACAAATTATTTAAATGGTATTATGTTACTTTCTAT 169137 30 100.0 37 .............................. AGTAATAGCTTGGTCTTTAATCCTTCTTTATCCTTTT 169070 30 100.0 36 .............................. TAGCTGTACTAAAAGAGAAGGGACAGTATATAAGAG 169004 30 100.0 36 .............................. ATCATGCGTTCTTGTGTTGTAGCCATTGTATTACCC 168938 30 100.0 36 .............................. CTAACTAATGGGAAAGTATATCTTAAAATCAATTCT 168872 30 100.0 35 .............................. GTAGAGATGATATAAAGGAGTATGATATATATATA 168807 30 100.0 37 .............................. ATTTTTCCTGCAGCAACTAATATTTTCATCACATAAC 168740 30 100.0 37 .............................. TGAAACAGATCCCTAGCCTGAGAATAGTAAATTTTCA 168673 30 100.0 35 .............................. CAGTTTGAACGCAGGGATGCCATTACCAGCATTAC 168608 30 100.0 36 .............................. TTATTAAAAGTTAAATAAAAGCTAGTCTGTGGCCTA 168542 30 100.0 36 .............................. GCATCTACTATAGTAATTGCTTTTTCGTCGATAGCC 168476 30 100.0 36 .............................. CAATCAGAAGCTTTACCAGGAGATTTAGTATTTTGG 168410 30 100.0 36 .............................. TGTTTTAACCTCCTTTACTGATATTGTACTAAGATT 168344 30 100.0 36 .............................. ATTGAAATTAATAATTGAAGCTGGATTAAATGCAAT 168278 30 100.0 35 .............................. ATATAGAAGATATTTTGATTTGTAGCATAGTTTCT 168213 30 100.0 36 .............................. CAGTTAATGCAACTACCAACTAAGTACTACCAGCAG 168147 30 100.0 34 .............................. TTCCACCAACTCCAGCAACTTGAACTTGTTGTTG 168083 30 100.0 36 .............................. GGTGTATTAGCAGTTGGTTTAAAGTAATCCTTGTTT 168017 30 100.0 36 .............................. GCAGTATCAACGAGAATTGCAACAACGTGACGAGTG 167951 30 100.0 36 .............................. ACATCTTCGCATAAACATTCAGCTTTTAGATTGCTA 167885 30 100.0 34 .............................. GCTATTCCAAACTGCTGTTATAGAATTCCAAATA 167821 30 100.0 36 .............................. AGCAGTTAATTATACTATTAAGAAAGCTACGCTTAT 167755 30 100.0 35 .............................. GTATAATGGTTTAAATCAACCTCTAACAATATAAA 167690 30 100.0 39 .............................. ATATTTTCAGTTGAAGCTTGTTTGAAGTCCAACTCGAAA 167621 30 100.0 36 .............................. CGGTTCCAGCGGGTTATAATATACAACCTCTTAACT 167555 30 100.0 36 .............................. TAACCAGCATACGTAATTTTACCAGCTTATTTACTA 167489 30 100.0 36 .............................. GCAGGGGATGTTGAGGTGGGGACTGTCGATTCTAAT 167423 30 100.0 36 .............................. ATAATATCACCTCAGTAATAAGTCTAGACACAAAAG 167357 30 100.0 37 .............................. ACATTGTAAGTTATCTCTAATACCTTTAAAGCTCCTT 167290 30 100.0 36 .............................. AAATGTCGTTGATACCACATTTGGTGATGGTGCAAA 167224 30 100.0 36 .............................. AAGTATAGGAGCGAAGTTATTAAATATAATTTTTGG 167158 30 96.7 36 ...........C.................. TCCATATATGATTTAAATGTTAGCAAAGTAAATGAT 167092 30 100.0 37 .............................. TATAATTGGAAGCTTAAAGTGTCCAATTTTGATAAAA 167025 30 100.0 36 .............................. TTAATTGGCGCAAACGGAAATAATATGATATTGTAG 166959 30 100.0 36 .............................. TTTTTAAAGCTGTACATTGGCAAGCCTCCCTTTTAC 166893 30 90.0 28 ........T......GC............. ATGAGTTGAATTATATAATTTAACTTAT Deletion [166836] 166835 30 76.7 0 .A.T...........G.......AA..TT. | ========== ====== ====== ====== ============================== ======================================= ================== 46 30 99.2 36 GTTGAACCATAACATAAGATGTATTTAAAT # Left flank : TGTCCAGAAGTAGAAGAAGCATTGGAAAGCTATAAACCTCAGATAACTGTTGTTTTTGCTGGAGCAGCTAAGTTTAGTGAGGGAGATCCAATTACCATGACAACACAAGACATTTATGATGTTTGCAGGAAAGTACCTAATTCAAAGGTTATTGTTGTTCATATGGAGACATGGAATCATTGTACCCTTACAAGATCAGAACTAAAAGATTTCTTGCAAAAGCACTCATTAGTTGAACAGGTATATGTGCCTGATGATGGAGAAAGTATAAACTGTGATAGTTTTTTAGAGGAAGTTTAAATAATATTATATTAAAATATGTGTTTTCCCAACCTTGTTTTAATAAAAAGTCCCTGTTAGGCATTAAGAATCAATGCGCTAAGGGATTTTTTATTAGATTTTCTAAAGATGATAAAACGGTTGGGAAAATTTTTGAAGAAGTCTTTGTTTTCAATGGCTTAAAGGTTATAATAAAAATAGAGAATGGCTGTTTTACAGTG # Right flank : AAAAACAAAATTCTTCTAAATTATGCGAATATGTTATTATAGTGTAAGATATAATAATTTCAATGAGTTGAATAATATATTTATTTAAAAATACTTGACCTGATAAAAATTTACATAGAGCTAAGGAAATAGAAGAAAAAATAGCAATTCCTCAGAGCGTTGTAAGATGGCATATAAATGAACCTATAAGTAAATGTATTCATATTAAGTCTACAAATAAAAGAAAAGGAGGATATATGTTGAGAAAGGAACTTTTAGTAAATTTCGTTTACAAATTATTACATAAGAGTTAAAATGATGACAAGGAGGGGATTATGTGAAGGTATATGAAATATCTATTCTGGTATTCTTACTAGAAGAGATCAATTCAACAGATGTTTCTTCAAAAATATCCGGTTTTATAGACAGTGGCATGGCAAAAGTGCCAGAACTACTAGAGTTTCATAACGAAAATGTATATAAAAATTATTGCTATAATTCGTTTTACCCTTTAGAAGAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //