Array 1 186007-186712 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVLV01000011.1 Eisenbergiella massiliensis strain TF05-5AC TF05-5AC.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 186007 33 100.0 34 ................................. TTGCCGAAGAAGAACTGGTCCGCAGGTGATTTTG 186074 33 100.0 34 ................................. ATGGATTCTTGGCTTGCAAATAGCCGGGAAAAAA 186141 33 100.0 34 ................................. AATCTGTATAACGGCTTACACGGTGAGCAGGACG 186208 33 100.0 34 ................................. TAGTCCATTGTTTTCTGTCTTATCTAACTGGCTT 186275 33 100.0 35 ................................. ATAAGGAACGCGGATATAAGCCCAAAATGCCCTGG 186343 33 100.0 34 ................................. AAAGCCTTCGGGAAGCTTCTCGGCCTGCTCTGCG 186410 33 100.0 33 ................................. TTCAACGCCTCCTGAAACACTGATGCTATTCCT 186476 33 100.0 37 ................................. ACGTTACGCTTATTACGTAGCTCTGTGCCGGTCTCCG 186546 33 93.9 35 ............T....A............... TTTGTTAAACCGAACCTTATGCAAATGTACAGTAG 186614 33 81.8 34 .........C.....T..A..A..T...T.... TATGGCTCACCGAGCTCCCAGGTATCCAAGGAGC 186681 32 72.7 0 CCA..-A....C.....A....A.T........ | ========== ====== ====== ====== ================================= ===================================== ================== 11 33 95.3 34 GTCTTCCTCTGTATAGAGGAAGTGGATTGAAAT # Left flank : GTTTTGATTACTACAACCAATTCAACAAGGAACGTAAGAACAATGCATATCTGATAAAATTAAAAGTACTTTTCTGGGAATTATCAGTAGTTGCTACCTGAATCTTAAAGAAAAGTTCAAAAAACGCTTTTTAAATTTGTGATGGATTGTTTGCGCTTTTTTGGTATCCGGAAGGTCATTTTTCACAGTAAACTGCCTTCGGTGATGAATTTTGGCGTTCCTGATACATATTTAGTCTAATTTTATGTGGATGATTCATTTTGTGGATAATGTAATCAGAACAAAGAATACTAAAGGTTTGTTTGAGTATGAGATGCTGGTGCGAATGTGAAGTGAACATAAAGTCCCCGGGAGATTCGCACCATGTATTTTCGGAAAAAAGAATAATTTATTTTAGACATATGATAATTTTGAAAATCTAGTTGATAATATTATCGCTTATATGTCAAAATTAGATATAAAATGTCTTGATGAAGGATATTCATTTGTTGATATTTGCG # Right flank : TCAAGTATATTTAGGAAGTGAGAAATTTAATTGACAACCGTCCGCTTTCACTGTATATTATTTATCAGATTAGTTCTTTTTGGAACAAATCAACATATAAAAAACTACTGGTATATGCCGCTATCCGAAGCACTGTTTTTCCTGGCTAATGGAAAAATTCTGATATGCCTGGGAAGGCTCATGATTTGTTATGAAAGTCATCGAAAGTTATTTTATTTAAAGAGAGGACAGTATCTGAGGCTCCAACCTTGAAATTCTATTATATTCAAGGCCGTTACAATAACTCAATTACTGCCAGCGTTAGGAAAAAGCCTAAGGTTTCACAGGTATACCAGATATCGCTACCCAGCCAGGACAGAAGAATGCTGTATTTGGCGGCATCCCTCCAGGCAGCCACAATACAACTATTGAAAGGGGATTTTATCTATGAAAGCAACAAAGGAAAAAGAAGCCGATCTTGGAAACGGCAGTATTGGGAAGCTTCTTTTCAGGCTGGCGCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCTCTGTATAGAGGAAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 146583-146282 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVLV01000007.1 Eisenbergiella massiliensis strain TF05-5AC TF05-5AC.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 146582 33 100.0 33 ................................. TACATATAATAAATCCGGTTGAAAGCCGAGAGT 146516 33 100.0 35 ................................. CCCTCAAAATTTGTGTTTGTTACGAGGTTAGTTAT 146448 33 100.0 33 ................................. TTATACTACCACCTAACCGCATTCCCCCTGAAA 146382 33 97.0 35 ...........C..................... GGACTATATGGATAATCATGAGAAAAAGTAAATAC 146314 33 81.8 0 ...........C.........A.AC...A.G.. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 95.8 34 GTCGAGGCTTGTAAGAGCCTCGTGGATTGAAAT # Left flank : CGTCAGGGCGTTGCATCCGCATTGATTTCGGAAATGCTCCGGCTTATGCCGGATGTTGATATCAGCGTTACGACATACCGCGAAGGGGATGAAAAAGGAATTGCACCAAGAGCATTATATCAGCGGTTCAATTTTGTGCCGGAGGAACTGTGTATGGAATTTGATTATCCGGTACAGCGGTTTGTGCTGCACAGGTTCCGGAAAAATTTGAACTGAGGTAGCCTTGGTAAGTTTGATAATCTTTTTTCTGTTGGCCGGGGGAGCAGAAAGATTAAATAATTATTTGTGTGTATTCCTACATGTGTTAAGTGGGGTTATAAATTTGGGAAGGTGCGAATTATAAGTGCACATTATTTCGCCGGGAGATTCGCACTTGAAAATTGGCAGTATGGAGATTTATGCAAATAAAAAGTAATATAATAATGACAATTTTTTAGAAGAGTTGTATAATGAGGATGTTATTACTTGGCTTTATAAGATAGATGTTGTATAGTATTGCT # Right flank : ATACAGTCTCACATACCTATAATAAAAATGGAGGAAACAGGTAATTAATGAAGGAGCGAATAAAAACTATAGTTTTCTGGATTTTGCTGGCTTTCACTGCAGCAGCGGCTATGGTAACTCCGTGGGCCTGTGCAAATAAAAAAGAAAATAATTCTGAAAAGGAAACTATGGTGGAGAGTCAGGAAGCGGCTGAAGGCACGATTGTTGGTGATGGTGCCGGGTTGAACAACGTAGGGTTTGCAAAAAGCCTGGATGGTGAAAATGTGGAAAAGGCACAGGAACAGGCGGAACGAAGCGTAGTCCGGCTGGATGTGCAGGGAAACGGTGCAGAGTATTTCGGAAGCGGCGTGATCTGGGATGTTACAGAGGAAGGGATAGTTATTGTGACCAGCAGACATTTGCTGGAAGAAGGGGAGTTGCTCCGGGTGGTTCTTCCGGACGGAAGGGAGACTTCCGGGAAGACGGAGGGCCTATGTCAGGTTAAGGATATTGGTTTTGTA # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTGTAAGAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 170792-169908 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVLV01000007.1 Eisenbergiella massiliensis strain TF05-5AC TF05-5AC.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 170791 32 100.0 33 ................................ ACTTTCAAAGTTGATAATGTAGCAAAAGAATCC 170726 32 100.0 33 ................................ TCAAACTCAACGGCCGGCCGCAGGAAGGAAAAA 170661 32 100.0 34 ................................ GCTATTAATCTGTCTATTGGTGTACTTTCTGACG 170595 32 100.0 34 ................................ CAGAATAGTCCCGATACGCGAACACGTTACCACA 170529 32 100.0 34 ................................ ATGAAATCTTCCACGGGAGCGGAGAAGATGGAAA 170463 32 100.0 34 ................................ GTTATACACACTGTTTCTTCTGCTGCTGTAACGG 170397 32 100.0 32 ................................ CATTCGATATGACGATATATTCATAATTTCCT 170333 32 100.0 33 ................................ AGACCACATCCTCTATGTCAAACACCAGCCAAA 170268 32 100.0 33 ................................ TCTTTATTCATCAGATAAAGACGGATGAACAGC 170203 32 100.0 33 ................................ GAGATAATCACCTTCAATGACTCCATTATAAAC 170138 32 93.8 33 ............AC.................. CCATCCTCCCAAGCTTCAGCGATTGGATCCGCG 170073 32 93.8 34 ............AC.................. TTTAACTTTCGCCCACAGGCGCTCAACGCCTCCA 170007 32 93.8 36 ............AC.................. AATAGCAGTGTCCTACATGACCACCGGATCCGTCGC 169939 32 87.5 0 ............AC.....TA........... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 97.8 34 GTCGAGGCTTATGTGGCCTCGTGGATTGAAAT # Left flank : CTGACTATATTGCATGCTGTGAGGACGAGGAAAAACTTCTGATGGAGCTGTGTGATTCGAAGCGGGAAAAAGAGGGGATCGGAGAGGAGGTGTTCGTGCATTTTGATACGCCGCTTACGGCAGAGCATGAAATGGAATTGTTGGAAAATGCAGGTTTTTCCCGGGTTGAGATGATTGAATGCATTGATTGGGCAGTGTTTATCAGAGCGGAAAAAGAAATTCTGTGATGGGATGAAAAATGTGTAACGAGGAATGAGAAGTGTACGGCTGATGGTTGAAAGAAGCAGCGAGGAGGAGAGAAAGGATGCGGCAGTAAGGAAGGGGAGGGGGGTGCGAATCGGAAGTGCACATGAATTTACCGGGGGATTCGCACCAGTTTTTTGTAAATAGTAATGGGTTTGGTAAATATATTGTAATTATATAGTGATAAATTTTTAGAGAAGTTGTATAATAGTGTCGTTGAGATAGTGGTTTGAAAATATTTGTTGTATGTTTTTGCT # Right flank : AGTTGCTTTGTGACATATTCATAGGCCACAACAGGTCAAGGATCATACCACCTCAAATAATCTTTTAACCCGCTATCCATCTTCCTCCTTTCAAGCGCCGCTTGAACCCATCCCTGCATCCCTTTCAAGCACTTCTTGCTTTCACGCCCACCCGAAAAACAGTATAATCAAAGGAAAAAGTCCAGGAGGACAAGAAATGTTTGACTTAGCCCGAGTTGGAAAACAGATTAAGAAATACAGGATTGCCGCCGATATGACGCAGATGGAGCTTGCGGAGAAAATGGGTATCAGCTTCCAGGCTGTCAGTAGTTGGGAAAGAAATGAAACTATGCCGGATATATCCAGAATGACAGAACTTGCAGAACTCTTTCACATAACCGTTGATGAACTGCTGGATTATCAGGACAAGGCGAAGTGCGTAGAAATGCTGATGCATCCTCAGGAGCAGGAAATCAGTGTAAAGGAATTACAGGAACTGGAGGGGATTGTAAAACCATCCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTGGCCTCGTGGATTGAAAT # Alternate repeat : GTCGAGGCTTATACGGCCTCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26229-26458 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVLV01000018.1 Eisenbergiella massiliensis strain TF05-5AC TF05-5AC.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 26229 32 100.0 34 ................................ ATTAACACTGTGTCTTTCCGGCGCTTGATGAAAT 26295 32 100.0 34 ................................ TGCCCCACAGGTTACTTCATACCCAAAGTTTGCC 26361 32 100.0 34 ................................ AGAAATATCCTCCATGATGGTTTCCTCTGTTTAG 26427 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Left flank : CTTTAAAAAAGCTGATTGAAAAGGAAGAATATACATTGCAGGAGTGGGCGGCAATGGAGGGGCTGGAGGCTCTTAATTATGAACCGCTTCATTCTGTTTTTCACAGAGAAGGGGATAGAATTTTGCTTGATAAAGAACGTTTGCTTTCGATTAGGCCGGAGGATATGTATGTGTGGTTTTATGAGATAGTTGATGCGGGCAGGAAGGGCGTTGCGGCGGAATAGAAGAGGGAAGAGTAATTTAAGCTCAGGCTGGGGAGGACAGACAAGGGAAGTATTTAGAGATGAAGAGAAGGGGACTTTTTTAGGACGGGAGTATGATTTTAGTTGGTGCGAACCGTAAGTTCCCATGGATTTGCCGGGGAATTCGCACCTGTTTTTGGGGAGAAATGGATGAAATATAGTGTGGAGATGATTATTTGGTGGAAATAATCGTGGGGTGGTTGTATAATAGATATAGATTTTGCAGGGGAAGGGATTGGGTTTTTGGAGGGATTTGCT # Right flank : TGGTTGAGAAGGCAGATGTAGAAAGTCCAAATACGTCGAGGCTTATATAGTCCCATTGATTGAATACTTTTTTCTGTAAGGATAAGGTACAATTGAAAACAAAAATATAAAAAATGTTAATGTACTAAAATAATTGTAAAAAGTAGTGTGAAAAGCTTAAAATGTAATGAGTAAATCAAATAATTTATGGTAAGTCTTTACATTAAAGTTAGTTTGATTATTGAGAGCGAAAGTCGGTGTGAACGCTTGATTTGCTAAATTAAAAATAAATATTTATTTTTAATCGTTTTCACACTTGTTAGTTAAGCGAATCAAAGAAATGTCTATTGGACATACTTTGATATCTGTAGTAAACTGGGTCCACTGAAACAATGTTAATTTTCGTTAGTGTTAGAAGAGTTAACTCATAAATGGAGCGAATTTAATTATGCAGGATTATTTTTATTTTTTGAACCGAAAAAATGTAGCGAATGGTTTTCGTGAATCGCTTAATAGCCGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : NA // Array 2 28643-29005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVLV01000018.1 Eisenbergiella massiliensis strain TF05-5AC TF05-5AC.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28643 32 100.0 33 ................................ ATAGCACGCCTTCTTTCCCGTTAAATTTCAGTT 28708 32 100.0 34 ................................ ATACTCCGCAGTCTGTATTATCCAATGGAGACCA 28774 32 100.0 35 ................................ GATGAGGAGAAGGGTCAGGCCGCTCAGCAGGGGAG 28841 32 100.0 35 ................................ ATTCGTACTTCTGCTGTGTTCCAGCGCTTCCCACA 28908 32 100.0 34 ................................ CTCCTAAAAGTTGTATTTATGGTATCTCACGCTC 28974 32 81.2 0 .................T..A.AT..C...T. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.9 34 GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Left flank : ATAATAATGAACATACTTTAAAATGTGTAATACATTTGGCATTTTATGCCGCCGCAGATGATTATGTACTGAAATTTGAACAAACAGCAGGTAAAGGGTATGCAGATTGTATTATGATACCTAAAAAGCCGGATCGGCCAGGGATCTTACTGGAATTAAAATATAACAGCAGTGCAGAAAAAGCGATAACTCAGATTAAAGAAAGAAACTATATAAGAGTTTTTGACAAGGGTATACACGAGGTTTATCTTGTTGGTATAAATTATGTCAAAAACGCGAAACATCATCAGTGTATAATTGAAACAGTAAAGAAAAACTGAAAAATACTGGTGCGAATCATAAGTGCCCATAGATTTGCGGGGGGGATTCGCACTTGTATAATGATGAAATATAGGATAATATAAATATAAAATAATATAATAATGACAACTTTCGGGGAGAGTTGTATAATAGGTATGTTATTGGGAGAATTTAAAGGAATTTTGTTGTGTATTTTTGCT # Right flank : TCCTACATCGATTACCAATATATTATAATTTAACTCCCATTGCCCACCTGCAAAGACACTCAAATACATAAGGAGAAGCACAATGAATGACGAAGAACGAAAAGAAAAAATAATACCAGACATTATCACAAATTATCAACAGTTGGAAAGTTCGATTGTTGAGCAGTTATATATGAAACACGCATTACATGGAACCACGATAGGAACTGAAAGAGAAGAAGTATGGAGCCAGGTGTTTGAAGCGATTTTACCCAAAAAGTTTGTGATAGAACGCTCTGTTTTTATCATTGATTCTCAGGAAAATGTTTCCCATGAGGTTGATCTCGCTATTTTTGATGAGACTTATACGCCATACATATTTCGTTACGGAAGAATTAAGTTTATTCCGATAGAAGCAGTAGCAGCAATTGTAGAATGCAAAAGCCAGAATATTAAAACTGAAACAATAAAAGCCTGGTATGACAGCATAGTAAAGTTGAGAACAGCGACCGGATCCATAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 43892-44057 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVLV01000018.1 Eisenbergiella massiliensis strain TF05-5AC TF05-5AC.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 43892 32 75.0 35 .A.CT..CT.A...AG................ ATAATAAAAACAACAGCCGAATGACACGTTCCGGA 43959 32 100.0 35 ................................ ATTCTTTGAGATAAAAAAAACAAAAGTTGAATCTT 44026 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 91.7 36 GTCGAGGTCTTTACGACCTCGTGGATTGAAAT # Left flank : GCCGGTATAGTCAGCTATCGCCCGTCGGAGCGCCGTATAGTTCCGGTCAGGATAAGCACACAGCACATCCAGATGAGCGGCCAGATAATCTTTCATGAAAGGCGAGAGACCCAGCGGATTAACATTTGCCCCAAATCCCGTAATCTCTTCCTTTTTTATCCCGTAAATCTGTTCTATTTTTTCCAAATCACTACCATGAAAAGCAGCCATAATACCCTCCTTTTTCGGGAACATTATTTTATATATTGGGGAGACCGCCGCGGCACGCTTCAGCCCATGACTATGCCGCGGCGGAACATCCGAATGTATGAAATGAAATAATGTCCGCGAACTTCTATTTTGAAATGTTGCAGGATTCCTATTGGTAATGTTATACTGTATACTGATATTAAATCTTTTTGGTTTGAAAAACAAGTATGTCTATTGAATAGCTTTATGTTGGCTGTTAGTAAATGCCGAAAGGATATATTAGTTGTATTTATTTACTGTTTATAGAGCAA # Right flank : TGTAAAAAGCAGCAGGGGCATAAAAGATTTAAGGAGAAATACTTTTGGAAGGGATAACTGTAATCGCAGAAACAGATAGATTGATTTTAAGAAGGTACAGGGAAAGTGATTTACAGGATTTGTACGAATATTTATCAAATCCGGAGGTGGTAAAATTTGAACCTTACAGGCCTATGAGCATGGATGAAGTAAGGCATAATCTTGAATGGAGGATTTCAACAGATGAAATGACTGCTGTTGAATTAAAGGAAAGCCATAAAATGATAGGAAATGTGTATCTGGGAAATAGGGATTTTGAGTGGCTTGAAATAGGATATGTATTTAACCAGGATTATTGGGGAAAAGGTTATGCAAAGGAAAGCTGTCTGGCTTTAGTGGGACAGGCATTTTCACAGGGTATACACAGAATCTTTGCTGAGTGCGATCCTGAAAACCCAAGTTCCTGGAAATTGTTAGAGGCATTGGGGTTTGAGAGAGAAGCACATTTAAGACAAAATGTT # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTTACGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //