Array 1 41303-41470 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41303 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 41369 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 41435 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGCCAGTTGCTGGAGGAGATCACAACGACTGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATGTCAGATCAATCAGTTCAAGAACTAATGTGCCGGTGGGAGCAATGGTGTTATC # Right flank : CAACTATCTAACACGCTATACACAGAATGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTAGATGTCAGATCAATCAGTTCAAGAACTTTAATATGCAGGCGGCGACTGATTTATTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGACAACAGACTCCGTCAACATCAGTCTTAAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTAATTCGCAGCTAAAACGTGTCACCGAGCAGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 41629-41862 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41629 36 86.1 30 NNNNN............................... TTTAATATGCAGGCGGCGACTGATTTATTT 41695 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 41761 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 41827 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.1 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATGTCAGATCAATCAGTTCAAGAACTAATGTGCCGGTGGGAGCAATGGTGTTATCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACATAAACATCGTATGCGAATCGTAACAACGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAGTAAGGTAGCCAAATACAACCATAAGGGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAACTATCTAACACGCTATACACAGAATGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCGGCACGCTATTCCATCCGATTAGCTACTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAGGTGTACTGCTTAGCTGACTCCCACGTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCTGGAAGCCCGCAATAGTCAATTGAAGCTGTCTCAGGTAGATGTC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 41955-42122 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41955 36 91.7 30 NNN................................. CGGCACGCTATTCCATCCGATTAGCTACTT 42021 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 42087 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CAATCAGTTCAAGAACAACTATCTAACACGCTATACACAGAATGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTAGATGTCAGATCAATCAGTTCAAGAACTTTAATATGCAGGCGGCGACTGATTTATTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGACAACAGACTCCGTCAACATCAGTCTTAAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTAATTCGCAGCTAAAACGTGTCACCGAGCAGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCTGGAAGCCCGCAATAGTCAATTGAAGCTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCAGGGTGCCGGCTACATATACACGACTTTCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAATGGTTTGAATACCCTTATCCCGCCATTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAAAGTTCTTTAAGTTGACCACTCATTTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 42346-42515 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 42346 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 42414 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 42480 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 3 36 100.0 32 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : TCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCGGCACGCTATTCCATCCGATTAGCTACTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAGGTGTACTGCTTAGCTGACTCCCACGTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCTGGAAGCCCGCAATAGTCAATTGAAGCT # Right flank : CGAAAGTTCTTTAAGTTGACCACTCATTTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATGTCAGATCAATCAGTTCAAGAACAATAGCAACCGAAAGCGCTCCAGTGTCGCCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGGCAATTTTAAAGCCGTGACCGATGCCACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGTAGTGCATACCATCATCACGAGTGCCGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAATGTTTTACCATCGGAACGCGTGGTAATGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGAACACGATGACGTAAAAGAAATGTATGTGTCTCAGGTAGATGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 5 42735-42968 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42735 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 42801 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 42867 36 100.0 30 .................................... GAATGTTTTACCATCGGAACGCGTGGTAAT 42933 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCTGGAAGCCCGCAATAGTCAATTGAAGCTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCAGGGTGCCGGCTACATATACACGACTTTCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAATGGTTTGAATACCCTTATCCCGCCATTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAAAGTTCTTTAAGTTGACCACTCATTTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATGTCAGATCAATCAGTTCAAGAACAATAGCAACCGAAAGCGCTCCAGTGTCGCC # Right flank : CTGAACACGATGACGTAAAAGAAATGTATGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATGTCAGATCAATCAGTTCAAGAACAATAGCCAAGTAAATACCGGCACGATTTACGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGCGTGTTAGTCGCTTGTGTGGCTTACCGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACATGACGCAGTTGGCGAAACCTTTGCACGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGTTGACGCGTTGCGCTGTCGCTGGCCGTTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCGCTGACATTGACCATCAACGGCGCCGAGGTCTCAGGTAGATGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 6 43189-43488 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43189 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 43255 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 43321 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 43387 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 43453 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CAATCAGTTCAAGAACAATAGCAACCGAAAGCGCTCCAGTGTCGCCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGGCAATTTTAAAGCCGTGACCGATGCCACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGTAGTGCATACCATCATCACGAGTGCCGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAATGTTTTACCATCGGAACGCGTGGTAATGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGAACACGATGACGTAAAAGAAATGTATGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATGTCAGATCAATCAGTTCAAGAACAATAGCCAAGTAAATACCGGCACGATTTAC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTAGATGTCAGATCAATCAGTTCAAGAACCAATATTTTGCCCCTTGTTCCGTTGCGCCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGCGGCATCTTCAAAATCAAAACGACGCGCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGATGACGAAGTGAGTTTGCCCACCGCTTGGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCAGATCAATCAGTTCAAGAACACTCGGGTATTGACAAAGATCGACGCGGCAGTCTCAGGTAGATGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 7 43581-43814 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808047.1 Lactobacillus sp. HMSC066G01 Scaffold918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43581 36 86.1 30 NNNNN............................... CAATATTTTGCCCCTTGTTCCGTTGCGCCA 43647 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 43713 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 43779 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.1 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATGTCAGATCAATCAGTTCAAGAACAATAGCCAAGTAAATACCGGCACGATTTACGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGCGTGTTAGTCGCTTGTGTGGCTTACCGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACATGACGCAGTTGGCGAAACCTTTGCACGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGTTGACGCGTTGCGCTGTCGCTGGCCGTTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCGCTGACATTGACCATCAACGGCGCCGAGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCAGATCAATCAGTTCAAGAACACTCGGGTATTGACAAAGATCGACGCGGCAGTCTCAGGTAGATGTCAGATCAAAAACCTTCAGTGAAGACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTAT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //