Array 1 9908-11168 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNI01000069.1 Corynebacterium bovis strain WCM1 69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 9908 29 93.1 32 .......TT.................... GGGTGTCTGGGCGTGGGGTCGTTCCGGTACAT 9969 29 96.6 32 ............................G GCCCGCGCCATGCACGACGACACGACCACCCT 10030 29 100.0 32 ............................. CACCACCTCCGCCTCGCCGCCAACGTCCTCGC 10091 29 100.0 32 ............................. TGAGCGATGTGTTGAGCGATCCCCCGCCCTCG 10152 29 96.6 32 ............................G CTGCAGGCGCAGGACGCTCTCCAGCTGTCACA 10213 29 100.0 32 ............................. CGACCATTGCGCCCACGCTGTAGTACTGCTGG 10274 29 100.0 33 ............................. CAATGAGCACTATCAACCCTGCCGATGTCTTCC 10336 29 100.0 32 ............................. ATGGCCCGCCGGTCGCTGAAGGGGTCGGACTA 10397 29 96.6 32 ............................G TGTGGGGAGTGTGTGTGGGGGTTACCGGTTGA 10458 29 100.0 33 ............................. GCTATGGAGGTTGTGACGTGCCGTGTTCTGAGC 10520 29 96.6 33 ............................G GTCGCGATGAGAGTCAGCGCCCTGCAAGGTGAC 10582 29 96.6 32 ............................G GGCGCTCGACCGAAGTTCCAGGAGTGGTCGAA 10643 29 100.0 32 ............................. TGGAACAGCCCATACGCCCCGGACGAGGGATT 10704 29 96.6 32 ............................G GGGTCCACTACCAGCCACTCAGGGGGACACTT 10765 29 96.6 32 ............................G CATTTCCATCGTGTCGGTGAACTGCTGCCCCT 10826 29 100.0 32 ............................. CTCAACCACGGCGGCCCGGACGTCCCAGTCGC 10887 29 100.0 32 ............................. ATGCCAGAATCCACGCTTTACCAGCAGGTCAG 10948 29 96.6 32 ............................A GAGCGCCCGGACTTGTTTGGTGAGCGTCGGAG 11009 29 96.6 41 ............................G AGCGGGGATGATCCGCGGGGATGATCCGGAGAGGACACGCT 11079 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 11140 28 86.2 0 ...........-...........AG...G | C [11155] ========== ====== ====== ====== ============================= ========================================= ================== 21 29 97.2 33 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : ACACCCGAGGACGGGGCCGACGAGGTTCCCGGCGGCCCTTCTCGACGGGAGGCCCCGTGATCACCGTGGTATTGACGTCTCCTCCGGAGCGGGTGCGTGGTCACCTCACGCGATGGCTCTCGGAAGTGGCGACCGGAGTGTATGTCGGCAAGGTGAGTGCCCGCGTGCGGGACGAGTTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACGTACCCGACCACCACCTGTGAGCAGGGGTACGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGGCTGGTCCTGTTTCGTCGGCCGGGCCGTGACCGGACCTCGCGGACCCGCGGCGAGTGGTCACGGGCCTCGCGGGAGCGTGGAGGCAGGACCAGGCGAGCGGATGGCCCGCACTGATGGCAGGTACAGACGTGAAGGGGCTGATCGACATCGAATGAAATCTGGCTTCTCGTGTACTAACATCCCTGGTCAGGAAGT # Right flank : CCGCGGCCGTCACCAGCAGCGCGGCCGCCACCACGACCGCTCACCCTCCTTGCGCCGCCCGTCTCGCGCCGCTTGCGCCGGCCCCGGCTCGCGCCAGCCCCGCTCGCGCCAGCGCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //